Wall clock time and date at job start Mon Mar 30 2020 02:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.73272 * 2 1 4 4 C 1.54350 * 110.99378 * 123.52375 * 2 1 3 5 5 C 1.51371 * 105.17237 * 144.64727 * 4 2 1 6 6 C 1.38498 * 130.39228 * 162.77446 * 5 4 2 7 7 C 1.38104 * 120.21438 * 180.02562 * 6 5 4 8 8 C 1.38247 * 119.93486 * 359.97438 * 7 6 5 9 9 C 1.38106 * 119.93928 * 359.97438 * 8 7 6 10 10 C 1.38211 * 109.75979 * 342.81876 * 5 4 2 11 11 C 1.51377 * 109.76086 * 359.97438 * 10 5 4 12 12 H 1.08991 * 110.30825 * 136.21415 * 11 10 5 13 13 N 1.46901 * 110.30521 * 258.27593 * 11 10 5 14 14 C 1.46897 * 110.99593 * 280.20090 * 13 11 10 15 15 C 1.52995 * 109.47240 * 185.32572 * 14 13 11 16 16 C 1.50703 * 115.55188 * 281.17571 * 15 14 13 17 17 H 1.07995 * 120.00156 * 144.18887 * 16 15 14 18 18 C 1.37882 * 119.99578 * 324.19290 * 16 15 14 19 19 N 1.31512 * 120.00138 * 337.24191 * 18 16 15 20 20 Si 1.86805 * 119.99628 * 157.24002 * 18 16 15 21 21 H 1.48502 * 109.46905 * 60.00077 * 20 18 16 22 22 H 1.48501 * 109.46978 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47249 * 300.00304 * 20 18 16 24 24 C 1.53002 * 117.50181 * 135.46859 * 15 14 13 25 25 C 1.52998 * 117.50183 * 66.84350 * 15 14 13 26 26 H 1.09001 * 109.46791 * 189.89580 * 1 2 3 27 27 H 1.09004 * 109.47170 * 309.89266 * 1 2 3 28 28 H 1.08996 * 109.47164 * 69.89382 * 1 2 3 29 29 H 1.09004 * 110.29843 * 25.72540 * 4 2 1 30 30 H 1.09001 * 110.30450 * 263.57719 * 4 2 1 31 31 H 1.07999 * 119.89435 * 0.05235 * 6 5 4 32 32 H 1.07994 * 120.02975 * 179.70703 * 7 6 5 33 33 H 1.08005 * 120.03577 * 180.02562 * 8 7 6 34 34 H 1.07993 * 119.89887 * 179.97438 * 9 8 7 35 35 H 1.00899 * 111.00509 * 156.24480 * 13 11 10 36 36 H 1.09005 * 109.47116 * 305.32201 * 14 13 11 37 37 H 1.09002 * 109.47504 * 65.32148 * 14 13 11 38 38 H 0.97002 * 119.99869 * 185.06363 * 19 18 16 39 39 H 1.09001 * 117.49712 * 359.97438 * 24 15 14 40 40 H 1.08996 * 117.50067 * 145.02209 * 24 15 14 41 41 H 1.09003 * 117.50348 * 214.98184 * 25 15 14 42 42 H 1.09002 * 117.49482 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0830 -0.7959 1.2013 5 6 3.3374 -1.4691 0.6870 6 6 4.3974 -2.0368 1.3740 7 6 5.4509 -2.6019 0.6826 8 6 5.4480 -2.6018 -0.6999 9 6 4.3914 -2.0371 -1.3869 10 6 3.3350 -1.4681 -0.6952 11 6 2.0785 -0.7947 -1.2043 12 1 2.3173 -0.1204 -2.0266 13 7 1.1010 -1.8014 -1.6392 14 6 1.4272 -2.3074 -2.9791 15 6 0.3194 -3.2510 -3.4516 16 6 0.3646 -4.6445 -2.8796 17 1 -0.5539 -5.1659 -2.6545 18 6 1.5789 -5.2536 -2.6435 19 7 2.6507 -4.8581 -3.2949 20 14 1.7014 -6.6407 -1.3983 21 1 0.8142 -7.7574 -1.8123 22 1 3.1046 -7.1219 -1.3298 23 1 1.2828 -6.1452 -0.0625 24 6 -0.1771 -3.0932 -4.8902 25 6 -1.0582 -2.6432 -3.7231 26 1 -0.3633 -1.0124 0.1766 27 1 -0.3634 0.6591 0.7885 28 1 -0.3633 0.3533 -0.9650 29 1 1.3586 -1.5430 1.5257 30 1 2.3252 -0.1214 2.0226 31 1 4.4000 -2.0381 2.4540 32 1 6.2783 -3.0396 1.2213 33 1 6.2709 -3.0436 -1.2423 34 1 4.3900 -2.0370 -2.4668 35 1 0.1630 -1.4306 -1.6111 36 1 1.5121 -1.4708 -3.6727 37 1 2.3735 -2.8471 -2.9433 38 1 3.4888 -5.3337 -3.1838 39 1 0.2851 -2.3169 -5.4999 40 1 -0.4711 -3.9974 -5.4232 41 1 -1.9318 -3.2514 -3.4883 42 1 -1.1752 -1.5710 -3.5654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430741750.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:18 Heat of formation + Delta-G solvation = 40.218827 kcal Electronic energy + Delta-G solvation = -21557.156356 eV Core-core repulsion = 18694.882658 eV Total energy + Delta-G solvation = -2862.273698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24464 -38.80211 -37.46349 -34.19595 -34.13391 -31.77903 -31.57126 -28.03738 -27.34855 -26.97865 -25.14245 -22.92388 -22.74207 -21.68989 -20.82383 -20.49239 -18.22172 -17.15933 -16.90673 -16.67854 -16.50537 -15.87137 -15.58668 -15.24393 -14.89158 -14.41532 -14.23139 -14.07687 -13.71746 -13.51420 -13.33201 -13.09197 -12.86099 -12.77852 -12.46455 -12.35266 -12.11938 -12.06541 -12.00773 -11.79584 -11.66185 -11.48445 -11.06783 -10.96466 -10.53603 -9.89551 -9.63699 -9.39449 -8.98175 -8.07063 -6.02360 0.54550 0.57732 1.37897 1.44482 1.49912 2.44677 2.89015 3.04189 3.40351 3.59814 3.70470 3.82734 4.06913 4.13839 4.21500 4.24680 4.36002 4.49014 4.54825 4.58452 4.65801 4.73408 4.75025 4.83325 4.88424 4.92667 4.95692 5.03378 5.05610 5.14029 5.18391 5.26309 5.31632 5.43079 5.49705 5.54834 5.61846 5.68045 5.70083 5.87613 6.13624 6.21344 6.43197 6.48674 6.86828 6.91070 7.53393 8.95624 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.009020 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.951268 B = 3103.573717 C = 4191.172831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.097 0.903 4 C -0.064 4.064 5 C -0.101 4.101 6 C -0.123 4.123 7 C -0.125 4.125 8 C -0.138 4.138 9 C -0.108 4.108 10 C -0.094 4.094 11 C 0.121 3.879 12 H 0.028 0.972 13 N -0.666 5.666 14 C 0.096 3.904 15 C 0.037 3.963 16 C -0.506 4.506 17 H 0.044 0.956 18 C 0.053 3.947 19 N -0.882 5.882 20 Si 0.929 3.071 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.279 1.279 24 C -0.210 4.210 25 C -0.189 4.189 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.340 0.660 36 H -0.016 1.016 37 H 0.100 0.900 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 10.401 9.205 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.116 0.884 4 C -0.101 4.101 5 C -0.102 4.102 6 C -0.141 4.141 7 C -0.143 4.143 8 C -0.156 4.156 9 C -0.127 4.127 10 C -0.095 4.095 11 C 0.012 3.988 12 H 0.046 0.954 13 N -0.300 5.300 14 C -0.032 4.032 15 C 0.036 3.964 16 C -0.542 4.542 17 H 0.062 0.938 18 C -0.150 4.150 19 N -0.518 5.518 20 Si 0.756 3.244 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.205 1.205 24 C -0.248 4.248 25 C -0.226 4.226 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.002 0.998 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.589 9.892 9.546 13.989 hybrid contribution -0.039 -0.486 -0.800 0.937 sum 2.550 9.406 8.746 13.095 Atomic orbital electron populations 1.21728 0.93207 1.02597 1.02385 1.21965 0.96974 0.98454 0.92676 0.88443 1.21072 0.92752 0.98273 0.97953 1.20921 0.96488 0.98846 0.93897 1.20900 0.93370 0.99092 1.00710 1.21299 0.99385 0.99814 0.93823 1.21204 0.98705 1.00307 0.95358 1.20720 0.94445 0.98315 0.99187 1.20637 0.94633 0.99112 0.95101 1.21041 0.90124 0.90954 0.96707 0.95380 1.60383 1.04926 1.37362 1.27328 1.21600 1.02024 0.93382 0.86203 1.18999 0.90369 0.94341 0.92652 1.20478 0.91768 0.99368 1.42631 0.93770 1.25268 0.95461 0.98442 0.95784 1.69957 1.01525 1.40902 1.39446 0.86075 0.76742 0.80118 0.81432 1.20046 1.21261 1.20505 1.22963 1.07419 1.00958 0.93499 1.22824 0.95760 0.99231 1.04795 0.92467 0.89894 0.92617 0.90600 0.88525 0.83925 0.83512 0.85262 0.88620 0.83794 0.99813 0.88191 0.93140 0.91131 0.91524 0.90508 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 7.91 71.98 0.57 -2.70 16 2 C -0.08 -2.14 3.63 -9.87 -0.04 -2.17 16 3 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.06 -1.68 6.32 30.52 0.19 -1.48 16 5 C -0.10 -3.28 6.14 -19.60 -0.12 -3.40 16 6 C -0.12 -3.59 10.04 22.30 0.22 -3.36 16 7 C -0.13 -3.68 10.05 22.24 0.22 -3.46 16 8 C -0.14 -4.69 10.05 22.24 0.22 -4.46 16 9 C -0.11 -4.24 9.28 22.30 0.21 -4.03 16 10 C -0.09 -3.53 5.51 -19.59 -0.11 -3.64 16 11 C 0.12 4.27 3.07 44.85 0.14 4.41 16 12 H 0.03 1.02 7.89 -2.39 -0.02 1.00 16 13 N -0.67 -27.19 6.05 -491.94 -2.98 -30.16 16 14 C 0.10 4.58 5.20 86.30 0.45 5.03 16 15 C 0.04 1.85 1.90 -52.93 -0.10 1.75 16 16 C -0.51 -28.22 8.97 25.60 0.23 -27.99 16 17 H 0.04 2.50 7.91 -2.91 -0.02 2.48 16 18 C 0.05 2.93 5.02 84.66 0.43 3.36 16 19 N -0.88 -49.84 11.19 21.45 0.24 -49.60 16 20 Si 0.93 45.10 29.60 68.60 2.03 47.13 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 24 C -0.21 -9.72 9.88 30.60 0.30 -9.42 16 25 C -0.19 -8.00 9.46 30.59 0.29 -7.71 16 26 H 0.06 1.53 7.10 -2.39 -0.02 1.51 16 27 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.05 1.27 7.65 -2.39 -0.02 1.25 16 29 H 0.08 2.14 7.74 -2.38 -0.02 2.12 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 33 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.10 4.05 7.61 -2.91 -0.02 4.03 16 35 H 0.34 12.65 5.25 -89.69 -0.47 12.18 16 36 H -0.02 -0.75 7.80 -2.38 -0.02 -0.77 16 37 H 0.10 5.33 4.13 -2.39 -0.01 5.32 16 38 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 39 H 0.07 3.08 8.09 -2.39 -0.02 3.06 16 40 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.09 3.20 8.08 -2.39 -0.02 3.19 16 Total: -1.00 -62.18 333.04 2.93 -59.25 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.53 Total: 32.66 kcal Atomic # 6 Polarization: -62.39 SS G_CDS: 3.11 Total: -59.28 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.74 Total: -79.76 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -62.18 2.93 -59.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430741750.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.473 kcal (2) G-P(sol) polarization free energy of solvation -62.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds