Wall clock time and date at job start Mon Mar 30 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38154 * 119.89292 * 2 1 4 4 C 1.38207 * 119.93282 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.93932 * 359.96231 * 4 3 2 6 6 C 1.38461 * 120.21290 * 0.09067 * 5 4 3 7 7 C 1.38265 * 119.84549 * 359.91215 * 6 5 4 8 8 C 1.51367 * 109.74797 * 179.97438 * 7 6 5 9 9 C 1.54346 * 105.17379 * 17.19611 * 8 7 6 10 10 C 1.51355 * 130.39856 * 179.91587 * 6 5 4 11 11 H 1.09007 * 110.30290 * 281.73442 * 10 6 5 12 12 N 1.46904 * 110.39020 * 43.84379 * 10 6 5 13 13 C 1.46902 * 110.99803 * 270.80100 * 12 10 6 14 14 C 1.52997 * 109.46831 * 174.73107 * 13 12 10 15 15 C 1.50699 * 115.55554 * 65.16548 * 14 13 12 16 16 H 1.08000 * 120.00262 * 264.73065 * 15 14 13 17 17 C 1.37879 * 119.99809 * 84.72155 * 15 14 13 18 18 N 1.31510 * 120.00044 * 352.91814 * 17 15 14 19 19 Si 1.86802 * 119.99597 * 172.91394 * 17 15 14 20 20 H 1.48496 * 109.47169 * 90.00418 * 19 17 15 21 21 H 1.48504 * 109.46775 * 210.00305 * 19 17 15 22 22 H 1.48494 * 109.47171 * 330.00032 * 19 17 15 23 23 C 1.52999 * 117.49794 * 279.49252 * 14 13 12 24 24 C 1.53005 * 117.49704 * 210.83550 * 14 13 12 25 25 H 1.09004 * 109.46877 * 269.98244 * 1 2 3 26 26 H 1.09002 * 109.46879 * 29.98101 * 1 2 3 27 27 H 1.08997 * 109.47204 * 149.97957 * 1 2 3 28 28 H 1.08000 * 120.03299 * 359.96722 * 3 2 1 29 29 H 1.08000 * 120.02975 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.89600 * 180.02562 * 5 4 3 31 31 H 1.08994 * 110.30575 * 258.26734 * 8 7 6 32 32 H 1.09005 * 110.30098 * 136.11646 * 8 7 6 33 33 H 1.09002 * 110.81762 * 215.41815 * 9 8 7 34 34 H 1.09002 * 110.82101 * 91.87225 * 9 8 7 35 35 H 1.00899 * 110.99810 * 146.84800 * 12 10 6 36 36 H 1.09004 * 109.46851 * 294.72333 * 13 12 10 37 37 H 1.08995 * 109.47205 * 54.72683 * 13 12 10 38 38 H 0.97003 * 120.00190 * 185.04307 * 18 17 15 39 39 H 1.09004 * 117.49901 * 0.02562 * 23 14 13 40 40 H 1.09002 * 117.50041 * 145.01915 * 23 14 13 41 41 H 1.09000 * 117.49793 * 214.97645 * 24 14 13 42 42 H 1.08993 * 117.49720 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5776 1.1987 0.0005 5 6 4.2679 0.0020 0.0019 6 6 3.5796 -1.1994 0.0008 7 6 2.1970 -1.2003 0.0002 8 6 1.6864 -2.6253 -0.0017 9 6 2.8897 -3.4861 0.4383 10 6 4.0921 -2.6235 0.0001 11 1 4.4164 -2.9084 -1.0009 12 7 5.1995 -2.7694 0.9544 13 6 6.4890 -2.4808 0.3125 14 6 7.6004 -2.5141 1.3635 15 6 7.8518 -3.8561 2.0015 16 1 7.3823 -4.1032 2.9422 17 6 8.6811 -4.7684 1.3842 18 7 9.1412 -4.5265 0.1762 19 14 9.1510 -6.3479 2.2639 20 1 8.1599 -7.4064 1.9439 21 1 10.4994 -6.7809 1.8172 22 1 9.1673 -6.1119 3.7299 23 6 7.7846 -1.2713 2.2365 24 6 8.8067 -1.5987 1.1451 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6543 2.1323 -0.0005 29 1 4.1174 2.1341 0.0001 30 1 5.3479 0.0036 0.0027 31 1 1.3636 -2.9101 -1.0030 32 1 0.8649 -2.7336 0.7066 33 1 2.8906 -4.4447 -0.0806 34 1 2.8892 -3.6291 1.5189 35 1 5.2000 -3.6889 1.3697 36 1 6.6899 -3.2308 -0.4526 37 1 6.4530 -1.4933 -0.1472 38 1 9.6642 -5.1993 -0.2873 39 1 7.1137 -0.4300 2.0624 40 1 8.0879 -1.4241 3.2722 41 1 9.7821 -1.9669 1.4633 42 1 8.8083 -0.9725 0.2530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430745376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:47 Heat of formation + Delta-G solvation = 25.284235 kcal Electronic energy + Delta-G solvation = -20717.010304 eV Core-core repulsion = 17854.088994 eV Total energy + Delta-G solvation = -2862.921310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18594 -38.73162 -37.14687 -34.57338 -33.95187 -33.23126 -29.91012 -28.41513 -27.43064 -27.19916 -24.99829 -22.99853 -22.84381 -21.75784 -21.11304 -20.46902 -17.94392 -17.20670 -16.88876 -16.59085 -16.05508 -15.93705 -15.67901 -15.35642 -14.70278 -14.52457 -14.24855 -14.13580 -13.75783 -13.46920 -13.06171 -12.98341 -12.93272 -12.90539 -12.82120 -12.50479 -12.37778 -12.21578 -12.02420 -11.94143 -11.78693 -11.56671 -11.22449 -10.70958 -10.40502 -9.95640 -9.42427 -9.35822 -9.11162 -8.08140 -6.19596 0.52987 0.54273 1.40449 1.43901 1.52953 2.43168 2.86001 3.19647 3.34458 3.55656 3.70897 3.76440 4.08768 4.12799 4.19673 4.28766 4.35662 4.42077 4.51220 4.60989 4.66322 4.71876 4.78514 4.87356 4.91267 4.93597 4.99836 5.01809 5.03624 5.05274 5.14044 5.24720 5.26114 5.29501 5.45141 5.63558 5.64892 5.68781 5.72003 5.80329 5.86952 6.21421 6.36109 6.48368 6.67225 6.89361 7.48525 8.99276 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026451 B = 0.004792 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.292382 B = 5841.668397 C = 6570.472202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.087 4.087 7 C -0.110 4.110 8 C -0.067 4.067 9 C -0.117 4.117 10 C 0.114 3.886 11 H 0.037 0.963 12 N -0.668 5.668 13 C 0.124 3.876 14 C 0.029 3.971 15 C -0.502 4.502 16 H 0.053 0.947 17 C 0.027 3.973 18 N -0.909 5.909 19 Si 0.948 3.052 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.271 1.271 23 C -0.178 4.178 24 C -0.168 4.168 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.344 0.656 36 H 0.001 0.999 37 H 0.042 0.958 38 H 0.258 0.742 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.305 7.084 -1.925 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.088 4.088 7 C -0.111 4.111 8 C -0.104 4.104 9 C -0.155 4.155 10 C 0.004 3.996 11 H 0.055 0.945 12 N -0.298 5.298 13 C -0.005 4.005 14 C 0.029 3.971 15 C -0.540 4.540 16 H 0.071 0.929 17 C -0.173 4.173 18 N -0.547 5.547 19 Si 0.774 3.226 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.195 1.195 23 C -0.215 4.215 24 C -0.206 4.206 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.020 0.980 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.199 7.647 -1.787 18.907 hybrid contribution 1.428 -1.605 -0.338 2.175 sum -15.771 6.042 -2.126 17.022 Atomic orbital electron populations 1.20784 0.89108 1.03601 1.02949 1.19783 0.97455 0.91408 0.99839 1.21212 0.93802 0.98225 1.01393 1.21245 0.95120 0.97489 1.00643 1.20779 0.99491 0.92476 1.01396 1.20629 0.94773 0.94435 0.98989 1.20675 0.93380 0.95927 1.01086 1.20954 0.97736 0.88942 1.02810 1.22503 0.92627 0.98110 1.02264 1.21137 0.92234 0.92138 0.94098 0.94482 1.60502 1.01674 1.35309 1.32357 1.21206 0.88474 0.96558 0.94276 1.18896 0.92838 0.89714 0.95693 1.20661 1.27434 0.99395 1.06542 0.92905 1.25655 0.95247 1.00990 0.95452 1.70106 1.36762 1.34888 1.12942 0.85708 0.77440 0.80258 0.79163 1.19938 1.21425 1.19540 1.22804 1.02729 1.00802 0.95190 1.22449 0.94708 1.04685 0.98750 0.90533 0.90311 0.90901 0.83514 0.84619 0.88200 0.89076 0.88909 0.89506 0.90250 0.83745 0.98046 0.93969 0.93269 0.90147 0.91001 0.92421 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.87 71.24 0.70 -0.96 16 2 C -0.08 -1.97 5.88 -19.84 -0.12 -2.09 16 3 C -0.13 -2.96 9.69 22.24 0.22 -2.74 16 4 C -0.13 -3.42 10.05 22.24 0.22 -3.20 16 5 C -0.12 -4.08 9.71 22.30 0.22 -3.86 16 6 C -0.09 -2.87 5.78 -19.60 -0.11 -2.98 16 7 C -0.11 -2.97 6.00 -19.60 -0.12 -3.09 16 8 C -0.07 -1.47 6.11 30.52 0.19 -1.28 16 9 C -0.12 -3.07 6.47 31.50 0.20 -2.87 16 10 C 0.11 3.86 3.19 44.83 0.14 4.01 16 11 H 0.04 1.36 7.86 -2.38 -0.02 1.34 16 12 N -0.67 -26.87 6.26 -492.00 -3.08 -29.95 16 13 C 0.12 5.73 5.29 86.30 0.46 6.19 16 14 C 0.03 1.46 1.55 -52.93 -0.08 1.38 16 15 C -0.50 -27.19 8.32 25.60 0.21 -26.98 16 16 H 0.05 2.87 7.82 -2.91 -0.02 2.85 16 17 C 0.03 1.45 5.39 84.66 0.46 1.91 16 18 N -0.91 -51.97 12.96 21.45 0.28 -51.70 16 19 Si 0.95 43.15 29.55 68.60 2.03 45.18 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 C -0.18 -8.08 9.96 30.62 0.30 -7.78 16 24 C -0.17 -8.20 9.47 30.62 0.29 -7.91 16 25 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 26 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 27 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 28 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.10 3.62 6.19 -2.91 -0.02 3.60 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16 35 H 0.34 14.27 7.95 -89.69 -0.71 13.55 16 36 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.04 1.89 5.93 -2.39 -0.01 1.87 16 38 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 39 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 40 H 0.07 3.24 8.14 -2.39 -0.02 3.23 16 41 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -61.33 340.12 2.69 -58.63 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.28 Total: 30.08 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 3.18 Total: -52.25 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.80 Total: -81.64 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -61.33 2.69 -58.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430745376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.918 kcal (2) G-P(sol) polarization free energy of solvation -61.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds