Wall clock time and date at job start Mon Mar 30 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47162 * 274.54580 * 3 2 1 5 5 H 1.48504 * 109.47214 * 34.54608 * 3 2 1 6 6 H 1.48501 * 109.47322 * 154.54767 * 3 2 1 7 7 C 1.39930 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99671 * 343.05813 * 7 2 1 9 9 C 1.41403 * 119.99822 * 163.05768 * 7 2 1 10 10 C 1.40784 * 120.21241 * 332.30436 * 9 7 2 11 11 C 1.37642 * 119.89687 * 179.97438 * 10 9 7 12 12 C 1.38521 * 120.32490 * 359.97438 * 11 10 9 13 13 C 1.39289 * 120.42397 * 0.03801 * 12 11 10 14 14 N 1.39688 * 119.95393 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99798 * 0.02562 * 14 13 12 16 16 H 1.09000 * 110.05654 * 325.20302 * 15 14 13 17 17 C 1.54267 * 110.03290 * 203.79073 * 15 14 13 18 18 C 1.54890 * 104.19352 * 217.10584 * 17 15 14 19 19 C 1.54890 * 102.75159 * 37.93822 * 18 17 15 20 20 C 1.53878 * 110.03411 * 86.61971 * 15 14 13 21 21 H 1.08993 * 110.03363 * 238.56872 * 20 15 14 22 22 C 1.52995 * 110.07245 * 359.97438 * 20 15 14 23 23 C 1.52999 * 117.49719 * 251.50664 * 22 20 15 24 24 C 1.53002 * 117.50179 * 182.84630 * 22 20 15 25 25 C 1.38315 * 120.09665 * 0.25844 * 13 12 11 26 26 H 0.96999 * 120.00258 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.05034 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.83963 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.78937 * 180.02562 * 12 11 10 30 30 H 0.96998 * 119.99838 * 180.02562 * 14 13 12 31 31 H 1.08994 * 110.48697 * 98.42430 * 17 15 14 32 32 H 1.08997 * 110.59721 * 335.83676 * 17 15 14 33 33 H 1.09001 * 110.75469 * 279.62147 * 18 17 15 34 34 H 1.09000 * 110.75455 * 156.25655 * 18 17 15 35 35 H 1.08998 * 110.48697 * 203.37549 * 19 18 17 36 36 H 1.09000 * 110.48274 * 80.73560 * 19 18 17 37 37 H 1.09009 * 115.55185 * 37.17287 * 22 20 15 38 38 H 1.08993 * 117.50247 * 0.02562 * 23 22 20 39 39 H 1.09005 * 117.49837 * 145.02287 * 23 22 20 40 40 H 1.08996 * 117.50238 * 214.98282 * 24 22 20 41 41 H 1.09000 * 117.49121 * 0.02562 * 24 22 20 42 42 H 1.08002 * 120.16413 * 179.69803 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3936 2.1019 -1.3957 5 1 1.4910 2.6231 0.7940 6 1 3.5846 1.4145 0.6017 7 6 2.0080 -1.2118 -0.0005 8 1 1.5031 -2.1269 0.2716 9 6 3.3760 -1.2381 -0.3574 10 6 3.8984 -0.2679 -1.2336 11 6 5.2311 -0.2993 -1.5762 12 6 6.0623 -1.2812 -1.0626 13 6 5.5596 -2.2479 -0.1949 14 7 6.4065 -3.2339 0.3168 15 6 7.8224 -3.2504 -0.0588 16 1 7.9393 -2.9185 -1.0905 17 6 8.3966 -4.6726 0.1070 18 6 9.8366 -4.4423 0.6291 19 6 9.6641 -3.2381 1.5879 20 6 8.6283 -2.3383 0.8827 21 1 9.1363 -1.5639 0.3081 22 6 7.6993 -1.6988 1.9165 23 6 7.4076 -0.2036 1.7749 24 6 8.3164 -0.7032 2.9008 25 6 4.2219 -2.2364 0.1563 26 1 -0.4850 0.8400 0.0004 27 1 3.2544 0.4999 -1.6363 28 1 5.6308 0.4453 -2.2488 29 1 7.1068 -1.2975 -1.3369 30 1 6.0571 -3.9076 0.9209 31 1 8.4167 -5.1901 -0.8521 32 1 7.8137 -5.2392 0.8330 33 1 10.5090 -4.1900 -0.1908 34 1 10.1962 -5.3180 1.1694 35 1 10.6092 -2.7090 1.7096 36 1 9.2851 -3.5712 2.5541 37 1 6.8945 -2.3361 2.2834 38 1 7.8772 0.3244 0.9450 39 1 6.4111 0.1430 2.0489 40 1 7.9176 -0.6851 3.9150 41 1 9.3843 -0.5035 2.8114 42 1 3.8299 -2.9884 0.8252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449697265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:25 Heat of formation + Delta-G solvation = 37.531125 kcal Electronic energy + Delta-G solvation = -21110.432802 eV Core-core repulsion = 18248.042557 eV Total energy + Delta-G solvation = -2862.390245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.55902 -37.49163 -35.81389 -34.19128 -32.87959 -30.12760 -28.92838 -28.55880 -26.11776 -25.00743 -22.15740 -21.88230 -21.16740 -20.68515 -20.16544 -18.75320 -17.37474 -16.26206 -15.90297 -15.63111 -14.90313 -14.49072 -14.33188 -13.90499 -13.81744 -13.16650 -12.81048 -12.58303 -12.38990 -12.19919 -11.80806 -11.51662 -11.37953 -11.29777 -11.10572 -11.02615 -10.79327 -10.65823 -10.64579 -10.41565 -10.31968 -9.78942 -9.63509 -9.50587 -9.41974 -9.15541 -8.79833 -7.53433 -6.84062 -6.35479 -4.39186 2.77243 3.00269 3.21598 3.32261 3.43269 4.07006 4.09405 4.19018 4.60129 4.70544 4.72919 4.83881 5.12756 5.32196 5.34633 5.51089 5.55919 5.57915 5.62942 5.69458 5.79058 5.83248 5.87961 5.92397 5.95837 6.13666 6.22133 6.25869 6.33235 6.36385 6.44102 6.51883 6.63849 6.69450 6.87040 6.94910 7.07823 7.39086 7.66294 7.77302 7.88110 8.05745 8.42487 8.52441 8.58688 8.85157 8.97753 10.18952 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.005383 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.516058 B = 5200.578401 C = 5605.086784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.084 3.916 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.243 1.243 7 C -0.450 4.450 8 H 0.086 0.914 9 C 0.126 3.874 10 C -0.276 4.276 11 C -0.049 4.049 12 C -0.291 4.291 13 C 0.246 3.754 14 N -0.748 5.748 15 C 0.162 3.838 16 H 0.077 0.923 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.115 4.115 20 C -0.077 4.077 21 H 0.067 0.933 22 C -0.118 4.118 23 C -0.160 4.160 24 C -0.198 4.198 25 C -0.281 4.281 26 H 0.283 0.717 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.388 0.612 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.717 -4.214 2.698 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.133 4.133 3 Si 0.746 3.254 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.166 1.166 7 C -0.479 4.479 8 H 0.104 0.896 9 C 0.123 3.877 10 C -0.296 4.296 11 C -0.067 4.067 12 C -0.314 4.314 13 C 0.147 3.853 14 N -0.379 5.379 15 C 0.055 3.945 16 H 0.095 0.905 17 C -0.168 4.168 18 C -0.162 4.162 19 C -0.153 4.153 20 C -0.097 4.097 21 H 0.085 0.915 22 C -0.136 4.136 23 C -0.197 4.197 24 C -0.235 4.235 25 C -0.305 4.305 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.222 0.778 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.590 -4.080 2.616 17.284 hybrid contribution -0.007 0.626 0.174 0.650 sum 16.584 -3.454 2.790 17.168 Atomic orbital electron populations 1.69700 1.08120 1.30025 1.36259 1.26151 0.94669 1.01782 0.90740 0.86245 0.81120 0.79527 0.78484 1.20018 1.22596 1.16632 1.19467 0.92915 0.95742 1.39753 0.89565 1.17416 0.92441 0.89844 0.88041 1.20827 0.95495 1.05265 1.08029 1.20327 0.93552 0.96027 0.96840 1.19824 0.98166 1.02502 1.10914 1.17437 0.89131 0.87481 0.91281 1.44598 1.06544 1.32764 1.54043 1.21320 0.81772 0.93580 0.97836 0.90497 1.22625 0.96085 0.96753 1.01326 1.22448 0.96495 0.98221 0.98992 1.22363 0.98353 0.95852 0.98686 1.21857 0.94922 0.97258 0.95649 0.91451 1.22061 1.00497 0.92173 0.98899 1.22835 1.00301 0.97068 0.99524 1.22967 0.98552 1.06673 0.95301 1.20334 0.91473 1.07013 1.11710 0.90686 0.88851 0.89401 0.89262 0.77810 0.91424 0.91252 0.91567 0.91697 0.92196 0.91478 0.87590 0.89443 0.89019 0.89657 0.89779 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.45 13.93 55.55 0.77 -21.68 16 2 C 0.08 2.29 5.43 -17.34 -0.09 2.19 16 3 Si 0.92 21.75 24.42 -169.99 -4.15 17.60 16 4 H -0.27 -6.33 6.66 56.52 0.38 -5.96 16 5 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.24 -5.87 6.75 56.52 0.38 -5.49 16 7 C -0.45 -12.53 9.59 -37.74 -0.36 -12.89 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 9 C 0.13 3.27 5.17 -106.85 -0.55 2.72 16 10 C -0.28 -6.84 7.10 -38.84 -0.28 -7.12 16 11 C -0.05 -1.07 10.01 -39.69 -0.40 -1.47 16 12 C -0.29 -5.95 8.80 -39.09 -0.34 -6.29 16 13 C 0.25 4.97 5.74 -83.86 -0.48 4.49 16 14 N -0.75 -11.88 3.46 -51.14 -0.18 -12.06 16 15 C 0.16 2.15 2.88 -66.81 -0.19 1.96 16 16 H 0.08 1.12 6.50 -51.93 -0.34 0.78 16 17 C -0.13 -1.38 6.52 -25.07 -0.16 -1.54 16 18 C -0.12 -1.13 6.91 -24.74 -0.17 -1.31 16 19 C -0.11 -1.17 6.18 -25.07 -0.16 -1.33 16 20 C -0.08 -0.96 3.06 -89.50 -0.27 -1.23 16 21 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 22 C -0.12 -1.68 3.56 -90.62 -0.32 -2.00 16 23 C -0.16 -2.51 9.72 -26.69 -0.26 -2.77 16 24 C -0.20 -2.59 10.06 -26.69 -0.27 -2.86 16 25 C -0.28 -6.56 9.63 -38.67 -0.37 -6.93 16 26 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 27 H 0.09 2.35 4.32 -52.49 -0.23 2.12 16 28 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.09 1.66 6.23 -52.49 -0.33 1.33 16 30 H 0.39 5.74 8.30 -40.82 -0.34 5.40 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.72 7.74 -51.93 -0.40 0.32 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.70 7.86 -51.93 -0.41 0.30 16 37 H 0.11 1.67 6.95 -51.92 -0.36 1.31 16 38 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 39 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -27.61 326.09 -9.97 -37.58 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.64 Total: 10.03 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -4.69 Total: -36.39 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.60 Total: -33.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.15 Total: 17.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.61 -9.97 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.113 kcal (2) G-P(sol) polarization free energy of solvation -27.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds