Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86798 * 119.99599 * 2 1 4 4 H 1.48506 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47280 * 299.99895 * 3 2 1 6 6 H 1.48496 * 109.47383 * 60.00447 * 3 2 1 7 7 C 1.39926 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99649 * 197.76745 * 7 2 1 9 9 C 1.41406 * 120.00221 * 17.76610 * 7 2 1 10 10 C 1.40779 * 120.20857 * 24.59289 * 9 7 2 11 11 C 1.37645 * 119.89324 * 180.25802 * 10 9 7 12 12 C 1.38521 * 120.32760 * 359.76496 * 11 10 9 13 13 C 1.39297 * 120.42179 * 359.97438 * 12 11 10 14 14 N 1.39680 * 119.95192 * 180.02562 * 13 12 11 15 15 C 1.46498 * 119.99912 * 0.02562 * 14 13 12 16 16 H 1.08995 * 110.67693 * 34.30175 * 15 14 13 17 17 C 1.54891 * 110.75660 * 271.06184 * 15 14 13 18 18 C 1.54464 * 104.10230 * 203.89172 * 17 15 14 19 19 C 1.53873 * 106.68571 * 23.34908 * 18 17 15 20 20 C 1.54266 * 106.59864 * 0.15311 * 19 18 17 21 21 H 1.08996 * 110.48743 * 95.06992 * 20 19 18 22 22 C 1.52998 * 110.49143 * 217.71544 * 20 19 18 23 23 C 1.53000 * 117.50163 * 243.39989 * 22 20 19 24 24 C 1.52997 * 59.99965 * 252.50370 * 23 22 20 25 25 C 1.38320 * 120.09388 * 0.02562 * 13 12 11 26 26 H 0.96995 * 120.00298 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.05449 * 359.97438 * 10 9 7 28 28 H 1.08005 * 119.84128 * 179.74725 * 11 10 9 29 29 H 1.07998 * 119.79046 * 180.02562 * 12 11 10 30 30 H 0.97002 * 119.99994 * 180.02562 * 14 13 12 31 31 H 1.08996 * 110.49021 * 322.42540 * 17 15 14 32 32 H 1.09002 * 110.48175 * 85.06836 * 17 15 14 33 33 H 1.08991 * 109.86451 * 264.10330 * 18 17 15 34 34 H 1.09000 * 110.16222 * 142.75137 * 18 17 15 35 35 H 1.09000 * 110.03304 * 240.87008 * 19 18 17 36 36 H 1.08999 * 110.07744 * 119.46101 * 19 18 17 37 37 H 1.08997 * 115.54743 * 29.10133 * 22 20 19 38 38 H 1.09003 * 117.49884 * 359.97438 * 23 22 20 39 39 H 1.09002 * 117.50127 * 145.01418 * 23 22 20 40 40 H 1.08996 * 117.50297 * 252.50616 * 24 23 22 41 41 H 1.09005 * 117.50028 * 107.48280 * 24 23 22 42 42 H 1.08007 * 120.15826 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0493 -1.2342 0.2849 9 6 1.3515 -2.4071 -0.3747 10 6 0.2213 -2.3620 -1.2128 11 6 -0.4158 -3.5290 -1.5687 12 6 0.0523 -4.7494 -1.1102 13 6 1.1727 -4.8100 -0.2847 14 7 1.6367 -6.0460 0.1716 15 6 0.9455 -7.2773 -0.2185 16 1 0.5498 -7.1924 -1.2305 17 6 -0.1843 -7.6144 0.7861 18 6 -0.3800 -9.1391 0.6346 19 6 0.9371 -9.6997 0.0700 20 6 1.8905 -8.4988 -0.0992 21 1 2.5358 -8.3980 0.7734 22 6 2.7274 -8.6543 -1.3706 23 6 4.2430 -8.7856 -1.2071 24 6 3.6425 -7.4919 -1.7608 25 6 1.8264 -3.6481 0.0838 26 1 -0.4850 0.8400 0.0004 27 1 -0.1480 -1.4128 -1.5723 28 1 -1.2853 -3.4931 -2.2084 29 1 -0.4540 -5.6598 -1.3951 30 1 2.4166 -6.0890 0.7468 31 1 0.1236 -7.3699 1.8027 32 1 -1.0986 -7.0815 0.5248 33 1 -1.1983 -9.3406 -0.0566 34 1 -0.5918 -9.5889 1.6046 35 1 0.7580 -10.1731 -0.8953 36 1 1.3654 -10.4212 0.7657 37 1 2.2573 -9.2173 -2.1768 38 1 4.6439 -8.7607 -0.1938 39 1 4.7702 -9.4352 -1.9058 40 1 3.7746 -7.2902 -2.8237 41 1 3.6482 -6.6162 -1.1117 42 1 2.6950 -3.6938 0.7241 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449697266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = 15.635270 kcal Electronic energy + Delta-G solvation = -20529.249705 eV Core-core repulsion = 17665.909984 eV Total energy + Delta-G solvation = -2863.339721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52146 -39.09935 -36.98544 -35.89934 -34.36262 -31.67014 -30.03294 -29.63109 -27.29863 -27.05162 -23.26789 -23.04489 -22.65516 -21.98180 -20.98190 -20.68520 -19.11631 -17.42191 -17.17521 -16.70862 -16.36364 -16.22088 -15.68453 -14.93648 -14.76492 -14.68168 -14.26017 -13.98391 -13.82246 -13.44263 -13.29798 -12.96721 -12.72931 -12.64913 -12.35106 -12.30262 -12.15701 -12.02508 -12.00553 -11.75135 -11.61075 -11.26855 -11.19302 -11.05140 -10.95152 -10.74541 -10.26435 -9.31907 -8.60141 -7.87231 -6.31381 1.05657 1.36234 1.39167 1.53537 1.59845 2.22921 2.79018 2.82079 2.93066 3.65226 3.77964 3.80677 3.91233 4.15705 4.19306 4.25662 4.47693 4.49101 4.52295 4.66109 4.71503 4.75940 4.79608 4.84779 4.86364 5.07944 5.12859 5.14068 5.17755 5.19066 5.22854 5.28629 5.31496 5.40396 5.43160 5.45778 5.53189 5.64948 5.99037 6.04969 6.22514 6.34000 6.65681 6.92999 7.03865 7.08694 7.28556 8.38420 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026864 B = 0.004272 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.048079 B = 6553.153509 C = 7124.313786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.114 3.886 10 C -0.234 4.234 11 C -0.076 4.076 12 C -0.301 4.301 13 C 0.243 3.757 14 N -0.738 5.738 15 C 0.161 3.839 16 H 0.070 0.930 17 C -0.142 4.142 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.062 4.062 21 H 0.076 0.924 22 C -0.140 4.140 23 C -0.166 4.166 24 C -0.195 4.195 25 C -0.313 4.313 26 H 0.286 0.714 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.391 0.609 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -16.674 -0.532 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.254 4.254 11 C -0.095 4.095 12 C -0.324 4.324 13 C 0.141 3.859 14 N -0.368 5.368 15 C 0.056 3.944 16 H 0.088 0.912 17 C -0.182 4.182 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.081 4.081 21 H 0.095 0.905 22 C -0.158 4.158 23 C -0.203 4.203 24 C -0.232 4.232 25 C -0.337 4.337 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.226 0.774 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.504 -16.668 -0.598 16.865 hybrid contribution 0.402 1.277 0.254 1.363 sum 2.905 -15.391 -0.344 15.667 Atomic orbital electron populations 1.69930 1.09031 1.30237 1.35881 1.26748 0.95451 1.04434 0.91191 0.85192 0.79383 0.76308 0.78966 1.18290 1.18832 1.18961 1.19816 0.98127 0.92716 1.42681 0.91142 1.17685 0.90995 0.92451 0.87799 1.21073 1.01919 0.96801 1.05652 1.20711 0.97861 0.92780 0.98133 1.20131 1.03243 0.96684 1.12374 1.17454 0.91917 0.85082 0.91400 1.44483 1.33743 1.02164 1.56455 1.21812 0.92144 0.83147 0.97338 0.91178 1.22861 0.98760 0.97027 0.99514 1.22089 0.98110 0.93507 1.01783 1.22094 0.93971 0.96257 1.02140 1.21752 0.95805 0.94303 0.96202 0.90532 1.22348 0.92024 1.02243 0.99216 1.23054 0.95024 0.99608 1.02623 1.22896 1.05944 0.93116 1.01226 1.20489 1.07241 0.92116 1.13873 0.90338 0.88766 0.87729 0.87320 0.77436 0.92386 0.93088 0.91197 0.90774 0.90460 0.90173 0.87078 0.88634 0.87711 0.89645 0.90150 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.22 10.96 21.82 0.24 -44.98 16 2 C 0.04 1.92 5.14 85.25 0.44 2.36 16 3 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.50 -28.68 9.05 23.46 0.21 -28.47 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.11 6.50 5.57 -21.31 -0.12 6.38 16 10 C -0.23 -13.10 8.69 22.75 0.20 -12.90 16 11 C -0.08 -3.75 10.01 22.20 0.22 -3.53 16 12 C -0.30 -13.68 9.23 22.59 0.21 -13.47 16 13 C 0.24 10.89 6.64 38.16 0.25 11.15 16 14 N -0.74 -25.44 4.13 -313.03 -1.29 -26.73 16 15 C 0.16 4.50 2.08 46.29 0.10 4.60 16 16 H 0.07 2.17 6.42 -2.39 -0.02 2.15 16 17 C -0.14 -3.72 6.53 31.74 0.21 -3.51 16 18 C -0.12 -2.18 6.81 31.39 0.21 -1.97 16 19 C -0.11 -1.78 6.37 31.32 0.20 -1.58 16 20 C -0.06 -1.30 2.67 -9.72 -0.03 -1.33 16 21 H 0.08 1.62 7.82 -2.39 -0.02 1.61 16 22 C -0.14 -2.92 5.20 -10.79 -0.06 -2.98 16 23 C -0.17 -3.18 10.19 30.59 0.31 -2.86 16 24 C -0.19 -4.89 9.85 30.59 0.30 -4.59 16 25 C -0.31 -16.14 9.63 22.86 0.22 -15.92 16 26 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 27 H 0.09 5.53 6.16 -2.91 -0.02 5.51 16 28 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.11 4.38 6.22 -2.91 -0.02 4.36 16 30 H 0.39 12.62 8.39 -92.71 -0.78 11.84 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.14 7.59 -2.39 -0.02 1.13 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 2.10 7.77 -2.39 -0.02 2.08 16 38 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 2.41 6.83 -2.38 -0.02 2.40 16 42 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -62.00 334.26 4.08 -57.91 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.23 Total: 40.53 kcal Atomic # 6 Polarization: -71.49 SS G_CDS: 2.88 Total: -68.61 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -1.05 Total: -71.71 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -62.00 4.08 -57.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449697266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.546 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds