Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99802 * 2 1 4 4 N 1.46906 * 109.47096 * 124.15719 * 3 2 1 5 5 C 1.46898 * 110.99779 * 300.67147 * 4 3 2 6 6 C 1.50702 * 109.47178 * 288.28094 * 5 4 3 7 7 H 1.08005 * 119.99744 * 356.02873 * 6 5 4 8 8 C 1.37876 * 120.00190 * 176.02569 * 6 5 4 9 9 N 1.31512 * 120.00157 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99924 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46865 * 90.00086 * 10 8 6 12 12 H 1.48498 * 109.47359 * 210.00294 * 10 8 6 13 13 H 1.48508 * 109.47112 * 330.00321 * 10 8 6 14 14 C 1.46899 * 110.99687 * 64.62566 * 4 3 2 15 15 C 1.50690 * 109.47371 * 66.04715 * 14 4 3 16 16 C 1.38239 * 120.00174 * 269.72708 * 15 14 4 17 17 C 1.38228 * 120.00407 * 179.78882 * 16 15 14 18 18 C 1.38241 * 119.99996 * 0.43677 * 17 16 15 19 19 C 1.50696 * 120.00270 * 179.83288 * 18 17 16 20 20 C 1.52999 * 117.49753 * 8.72882 * 19 18 17 21 21 C 1.53003 * 117.49925 * 300.07054 * 19 18 17 22 22 C 1.38238 * 119.99842 * 359.81872 * 18 17 16 23 23 C 1.38233 * 120.00349 * 89.99890 * 15 14 4 24 24 H 1.08001 * 119.99256 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00210 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00526 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47132 * 4.16265 * 3 2 1 28 28 H 1.08999 * 109.47387 * 244.15805 * 3 2 1 29 29 H 1.08997 * 109.47626 * 48.28590 * 5 4 3 30 30 H 1.09000 * 109.46678 * 168.28475 * 5 4 3 31 31 H 0.97004 * 119.99860 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46557 * 186.04500 * 14 4 3 33 33 H 1.09000 * 109.47418 * 306.04305 * 14 4 3 34 34 H 1.08002 * 119.99453 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.00349 * 180.26909 * 17 16 15 36 36 H 1.08997 * 115.54914 * 154.39691 * 19 18 17 37 37 H 1.09000 * 117.49785 * 359.97438 * 20 19 18 38 38 H 1.08998 * 117.49715 * 145.01660 * 20 19 18 39 39 H 1.09000 * 117.49613 * 214.97698 * 21 19 18 40 40 H 1.08994 * 117.49745 * 359.96989 * 21 19 18 41 41 H 1.07997 * 119.99877 * 180.02562 * 22 18 17 42 42 H 1.08002 * 119.99914 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9818 1.3404 1.1461 5 6 2.2491 1.2044 2.4121 6 6 1.4805 2.4714 2.6863 7 1 1.5814 3.3183 2.0237 8 6 0.6485 2.5493 3.7829 9 7 -0.0226 3.6548 4.0219 10 14 0.4733 1.0842 4.9284 11 1 1.4915 1.1737 6.0058 12 1 -0.8846 1.0852 5.5294 13 1 0.6740 -0.1712 4.1608 14 6 4.0171 0.3056 1.0232 15 6 4.9025 0.6183 -0.1554 16 6 4.5900 0.1196 -1.4063 17 6 5.3998 0.4101 -2.4882 18 6 6.5272 1.1918 -2.3177 19 6 7.4121 1.5053 -3.4965 20 6 6.9072 1.1065 -4.8846 21 6 8.0518 0.3266 -4.2329 22 6 6.8426 1.6861 -1.0658 23 6 6.0303 1.3992 0.0153 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3575 2.1323 0.0746 28 1 2.6331 1.3959 -0.9249 29 1 1.5555 0.3665 2.3423 30 1 2.9551 1.0251 3.2229 31 1 -0.6083 3.7094 4.7933 32 1 4.6174 0.2825 1.9327 33 1 3.5445 -0.6654 0.8750 34 1 3.7115 -0.4945 -1.5387 35 1 5.1533 0.0241 -3.4663 36 1 7.9929 2.4242 -3.4170 37 1 5.9352 0.6169 -4.9452 38 1 7.1562 1.7629 -5.7184 39 1 9.0534 0.4702 -4.6382 40 1 7.8331 -0.6756 -3.8644 41 1 7.7230 2.2971 -0.9327 42 1 6.2766 1.7855 0.9933 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459561197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = 76.422861 kcal Electronic energy + Delta-G solvation = -20241.681329 eV Core-core repulsion = 17380.977556 eV Total energy + Delta-G solvation = -2860.703773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.76141 -37.82233 -36.37076 -32.79489 -32.48944 -30.93351 -30.63047 -27.78064 -26.34539 -24.19973 -22.90331 -22.25686 -21.99187 -20.78950 -20.06439 -18.78632 -16.84428 -16.63706 -15.61455 -15.35136 -14.96457 -14.76444 -14.33108 -14.11872 -13.94590 -13.72419 -13.19736 -12.85840 -12.65847 -12.31431 -12.05400 -11.75353 -11.62851 -11.43446 -11.15351 -10.98168 -10.83583 -10.73313 -10.67359 -10.49326 -10.42624 -10.30481 -9.84247 -9.32175 -8.85279 -8.68314 -8.53237 -8.25785 -7.32568 -6.02056 -3.98328 1.45791 1.59871 2.79440 3.29327 3.36889 3.38944 3.56715 4.05972 4.44309 4.45445 4.71053 4.82567 4.92835 5.00680 5.12799 5.20606 5.23410 5.30778 5.42681 5.45763 5.54618 5.63228 5.66317 5.72117 5.85876 5.89544 5.95181 6.00210 6.13386 6.23873 6.26434 6.36300 6.60185 6.63504 6.72994 6.82851 6.92672 7.02732 7.10577 7.18282 7.28142 7.63947 7.92299 8.04677 8.69398 9.07955 9.60292 11.11246 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.004010 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.658170 B = 6980.868252 C = 7326.682274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.086 3.914 4 N -0.512 5.512 5 C 0.158 3.842 6 C -0.501 4.501 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.902 5.902 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.083 3.917 15 C -0.064 4.064 16 C -0.111 4.111 17 C -0.124 4.124 18 C -0.063 4.063 19 C -0.112 4.112 20 C -0.179 4.179 21 C -0.172 4.172 22 C -0.115 4.115 23 C -0.095 4.095 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.000 1.000 30 H 0.019 0.981 31 H 0.262 0.738 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.705 -8.410 -14.465 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.205 4.205 3 C -0.042 4.042 4 N -0.234 5.234 5 C 0.032 3.968 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.541 5.541 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.045 4.045 15 C -0.065 4.065 16 C -0.129 4.129 17 C -0.142 4.142 18 C -0.063 4.063 19 C -0.130 4.130 20 C -0.216 4.216 21 C -0.209 4.209 22 C -0.133 4.133 23 C -0.114 4.114 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.816 -7.854 -14.299 20.746 hybrid contribution -0.664 -1.529 0.809 1.853 sum 12.152 -9.383 -13.490 20.438 Atomic orbital electron populations 1.23786 0.96085 1.01376 1.00467 1.23579 0.96753 0.99805 1.00331 1.21337 0.94686 0.94405 0.93761 1.62288 1.13254 1.44450 1.03433 1.20259 0.92723 0.97611 0.86198 1.20992 1.23609 0.98678 1.10690 0.90226 1.24867 0.95424 0.95536 0.97404 1.69893 1.29049 1.26368 1.28791 0.86930 0.77560 0.84097 0.81608 1.20261 1.21272 1.19207 1.21118 0.93767 0.94024 0.95596 1.19899 0.95129 0.96636 0.94793 1.21035 0.99181 1.00367 0.92354 1.20904 0.95097 0.99629 0.98533 1.19024 0.95341 0.98660 0.93322 1.21010 1.01690 0.99338 0.90971 1.23065 0.99075 1.03922 0.95493 1.23020 0.97611 0.96529 1.03782 1.20883 0.99820 1.00546 0.92080 1.21035 0.94250 0.97117 0.98972 0.89680 0.88069 0.88713 0.89383 0.91321 0.98231 0.96254 0.92763 0.90560 0.94669 0.86398 0.86516 0.87188 0.88350 0.88624 0.88710 0.88682 0.86410 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 14.32 29.01 0.42 -2.65 16 2 C -0.18 -3.22 7.38 -36.02 -0.27 -3.49 16 3 C 0.09 1.64 5.34 -4.97 -0.03 1.61 16 4 N -0.51 -10.60 4.65 -238.96 -1.11 -11.71 16 5 C 0.16 3.80 3.67 -4.98 -0.02 3.78 16 6 C -0.50 -14.18 9.10 -34.44 -0.31 -14.49 16 7 H 0.08 2.48 7.86 -52.48 -0.41 2.06 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 10 Si 0.87 21.59 27.55 -169.99 -4.68 16.90 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.41 6.43 56.52 0.36 -6.05 16 14 C 0.08 1.42 4.96 -4.98 -0.02 1.39 16 15 C -0.06 -0.98 4.88 -104.63 -0.51 -1.49 16 16 C -0.11 -1.53 7.91 -39.58 -0.31 -1.84 16 17 C -0.12 -1.54 9.30 -39.58 -0.37 -1.91 16 18 C -0.06 -0.77 5.61 -104.62 -0.59 -1.36 16 19 C -0.11 -1.10 6.04 -91.77 -0.55 -1.66 16 20 C -0.18 -1.51 9.86 -26.69 -0.26 -1.78 16 21 C -0.17 -1.44 10.17 -26.69 -0.27 -1.71 16 22 C -0.12 -1.48 9.74 -39.58 -0.39 -1.87 16 23 C -0.10 -1.38 9.70 -39.58 -0.38 -1.76 16 24 H 0.08 1.28 8.06 -52.49 -0.42 0.85 16 25 H 0.10 1.82 7.84 -52.49 -0.41 1.41 16 26 H 0.09 1.52 6.81 -52.49 -0.36 1.16 16 27 H 0.09 1.90 7.01 -51.93 -0.36 1.53 16 28 H 0.07 1.20 5.86 -51.93 -0.30 0.90 16 29 H 0.00 0.00 5.47 -51.93 -0.28 -0.28 16 30 H 0.02 0.47 7.44 -51.93 -0.39 0.08 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 32 H 0.08 1.28 7.81 -51.93 -0.41 0.87 16 33 H 0.04 0.58 6.30 -51.93 -0.33 0.25 16 34 H 0.12 1.54 7.97 -52.49 -0.42 1.12 16 35 H 0.12 1.23 6.02 -52.49 -0.32 0.92 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.83 6.18 -51.93 -0.32 0.51 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -30.42 337.87 -10.34 -40.76 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.44 Total: 3.17 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.97 Total: -27.33 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.34 Total: -38.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.68 Total: 16.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.42 -10.34 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459561197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.183 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds