Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99802 * 2 1 4 4 N 1.46906 * 109.47096 * 124.15719 * 3 2 1 5 5 C 1.46898 * 110.99779 * 300.67147 * 4 3 2 6 6 C 1.50702 * 109.47178 * 288.28094 * 5 4 3 7 7 H 1.08005 * 119.99744 * 356.02873 * 6 5 4 8 8 C 1.37876 * 120.00190 * 176.02569 * 6 5 4 9 9 N 1.31512 * 120.00157 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99924 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46865 * 90.00086 * 10 8 6 12 12 H 1.48498 * 109.47359 * 210.00294 * 10 8 6 13 13 H 1.48508 * 109.47112 * 330.00321 * 10 8 6 14 14 C 1.46899 * 110.99687 * 64.62566 * 4 3 2 15 15 C 1.50690 * 109.47371 * 66.04715 * 14 4 3 16 16 C 1.38239 * 120.00174 * 269.72708 * 15 14 4 17 17 C 1.38228 * 120.00407 * 179.78882 * 16 15 14 18 18 C 1.38241 * 119.99996 * 0.43677 * 17 16 15 19 19 C 1.50696 * 120.00270 * 179.83288 * 18 17 16 20 20 C 1.52999 * 117.49753 * 8.72882 * 19 18 17 21 21 C 1.53003 * 117.49925 * 300.07054 * 19 18 17 22 22 C 1.38238 * 119.99842 * 359.81872 * 18 17 16 23 23 C 1.38233 * 120.00349 * 89.99890 * 15 14 4 24 24 H 1.08001 * 119.99256 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00210 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00526 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47132 * 4.16265 * 3 2 1 28 28 H 1.08999 * 109.47387 * 244.15805 * 3 2 1 29 29 H 1.08997 * 109.47626 * 48.28590 * 5 4 3 30 30 H 1.09000 * 109.46678 * 168.28475 * 5 4 3 31 31 H 0.97004 * 119.99860 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46557 * 186.04500 * 14 4 3 33 33 H 1.09000 * 109.47418 * 306.04305 * 14 4 3 34 34 H 1.08002 * 119.99453 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.00349 * 180.26909 * 17 16 15 36 36 H 1.08997 * 115.54914 * 154.39691 * 19 18 17 37 37 H 1.09000 * 117.49785 * 359.97438 * 20 19 18 38 38 H 1.08998 * 117.49715 * 145.01660 * 20 19 18 39 39 H 1.09000 * 117.49613 * 214.97698 * 21 19 18 40 40 H 1.08994 * 117.49745 * 359.96989 * 21 19 18 41 41 H 1.07997 * 119.99877 * 180.02562 * 22 18 17 42 42 H 1.08002 * 119.99914 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9818 1.3404 1.1461 5 6 2.2491 1.2044 2.4121 6 6 1.4805 2.4714 2.6863 7 1 1.5814 3.3183 2.0237 8 6 0.6485 2.5493 3.7829 9 7 -0.0226 3.6548 4.0219 10 14 0.4733 1.0842 4.9284 11 1 1.4915 1.1737 6.0058 12 1 -0.8846 1.0852 5.5294 13 1 0.6740 -0.1712 4.1608 14 6 4.0171 0.3056 1.0232 15 6 4.9025 0.6183 -0.1554 16 6 4.5900 0.1196 -1.4063 17 6 5.3998 0.4101 -2.4882 18 6 6.5272 1.1918 -2.3177 19 6 7.4121 1.5053 -3.4965 20 6 6.9072 1.1065 -4.8846 21 6 8.0518 0.3266 -4.2329 22 6 6.8426 1.6861 -1.0658 23 6 6.0303 1.3992 0.0153 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3575 2.1323 0.0746 28 1 2.6331 1.3959 -0.9249 29 1 1.5555 0.3665 2.3423 30 1 2.9551 1.0251 3.2229 31 1 -0.6083 3.7094 4.7933 32 1 4.6174 0.2825 1.9327 33 1 3.5445 -0.6654 0.8750 34 1 3.7115 -0.4945 -1.5387 35 1 5.1533 0.0241 -3.4663 36 1 7.9929 2.4242 -3.4170 37 1 5.9352 0.6169 -4.9452 38 1 7.1562 1.7629 -5.7184 39 1 9.0534 0.4702 -4.6382 40 1 7.8331 -0.6756 -3.8644 41 1 7.7230 2.2971 -0.9327 42 1 6.2766 1.7855 0.9933 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459561197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = 60.109053 kcal Electronic energy + Delta-G solvation = -20242.388749 eV Core-core repulsion = 17380.977556 eV Total energy + Delta-G solvation = -2861.411193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79904 -39.11079 -37.38585 -34.79761 -33.96385 -32.23900 -31.72470 -29.59355 -27.68598 -25.70405 -23.88929 -23.25960 -22.95480 -22.43612 -21.05373 -20.23629 -18.85620 -17.67934 -16.86187 -16.65011 -16.42188 -16.00590 -15.81527 -15.47320 -15.23527 -14.87871 -14.53852 -14.21766 -14.14432 -13.65978 -13.43313 -13.08692 -12.92716 -12.60108 -12.47674 -12.34836 -12.28596 -12.20474 -11.94661 -11.79361 -11.71624 -11.45396 -11.42153 -11.16507 -10.76158 -10.25588 -9.73884 -9.30360 -8.91087 -8.25738 -6.27639 0.41986 0.56671 1.34200 1.35316 1.40677 1.46019 2.35249 2.67410 3.08247 3.18756 3.50465 3.68893 3.90012 4.02059 4.04153 4.05786 4.16853 4.17431 4.27200 4.34087 4.48140 4.54459 4.63945 4.73219 4.77640 4.85617 4.92773 4.96700 4.99054 5.03145 5.16275 5.19018 5.21224 5.25408 5.30250 5.57243 5.58097 5.68590 5.75386 5.80826 5.84505 6.06681 6.16636 6.39763 6.67614 6.78043 7.35395 8.91252 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.004010 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.658170 B = 6980.868252 C = 7326.682274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.092 3.908 4 N -0.530 5.530 5 C 0.171 3.829 6 C -0.505 4.505 7 H 0.032 0.968 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.249 1.249 14 C 0.088 3.912 15 C -0.085 4.085 16 C -0.115 4.115 17 C -0.127 4.127 18 C -0.061 4.061 19 C -0.130 4.130 20 C -0.175 4.175 21 C -0.163 4.163 22 C -0.122 4.122 23 C -0.110 4.110 24 H 0.113 0.887 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.002 0.998 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.135 0.865 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.988 -10.841 -15.617 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.208 4.208 3 C -0.036 4.036 4 N -0.253 5.253 5 C 0.044 3.956 6 C -0.544 4.544 7 H 0.051 0.949 8 C -0.187 4.187 9 N -0.591 5.591 10 Si 0.765 3.235 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.173 1.173 14 C -0.039 4.039 15 C -0.085 4.085 16 C -0.133 4.133 17 C -0.145 4.145 18 C -0.061 4.061 19 C -0.148 4.148 20 C -0.211 4.211 21 C -0.199 4.199 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.131 0.869 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.020 0.980 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.119 -10.294 -15.475 23.341 hybrid contribution -0.994 -0.666 1.028 1.578 sum 13.126 -10.961 -14.447 22.386 Atomic orbital electron populations 1.23928 0.96182 1.01863 0.99830 1.23564 0.96837 0.99538 1.00827 1.21182 0.94187 0.94333 0.93869 1.62129 1.13827 1.46852 1.02452 1.19972 0.92493 0.95058 0.88102 1.21190 1.24200 0.99142 1.09830 0.94939 1.25779 0.94977 0.98705 0.99287 1.70055 1.30243 1.28978 1.29831 0.85794 0.77774 0.80544 0.79343 1.19143 1.20893 1.17309 1.21101 0.92828 0.93335 0.96676 1.19792 0.95545 0.98387 0.94790 1.21151 0.99685 1.00358 0.92110 1.21166 0.94836 0.99397 0.99064 1.19353 0.95341 0.97472 0.93934 1.21069 1.02397 1.00568 0.90799 1.23165 0.99216 1.03842 0.94891 1.23083 0.98471 0.95691 1.02699 1.21115 1.00190 1.00729 0.91977 1.21141 0.94704 0.97480 0.99521 0.86853 0.89988 0.86380 0.93179 0.89780 0.98050 0.95940 0.92584 0.90640 0.93490 0.85609 0.84479 0.86422 0.88359 0.87235 0.87074 0.88973 0.84685 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.96 14.32 67.78 0.97 -4.99 16 2 C -0.19 -6.31 7.38 25.65 0.19 -6.12 16 3 C 0.09 3.55 5.34 85.56 0.46 4.01 16 4 N -0.53 -22.09 4.65 -909.94 -4.23 -26.32 16 5 C 0.17 8.19 3.67 85.56 0.31 8.51 16 6 C -0.51 -29.55 9.10 25.60 0.23 -29.32 16 7 H 0.03 2.15 7.86 -2.91 -0.02 2.12 16 8 C 0.01 0.55 5.47 84.65 0.46 1.02 16 9 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 10 Si 0.94 44.43 27.55 68.60 1.89 46.32 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.25 -10.97 6.43 99.48 0.64 -10.33 16 14 C 0.09 2.92 4.96 85.55 0.42 3.35 16 15 C -0.08 -2.52 4.88 -19.87 -0.10 -2.62 16 16 C -0.11 -2.98 7.91 22.27 0.18 -2.81 16 17 C -0.13 -2.90 9.30 22.27 0.21 -2.70 16 18 C -0.06 -1.37 5.61 -19.86 -0.11 -1.48 16 19 C -0.13 -2.24 6.04 -11.54 -0.07 -2.31 16 20 C -0.17 -2.44 9.86 30.62 0.30 -2.14 16 21 C -0.16 -2.23 10.17 30.62 0.31 -1.92 16 22 C -0.12 -3.00 9.74 22.27 0.22 -2.78 16 23 C -0.11 -3.14 9.70 22.27 0.22 -2.92 16 24 H 0.11 3.10 8.06 -2.91 -0.02 3.07 16 25 H 0.08 3.01 7.84 -2.91 -0.02 2.99 16 26 H 0.12 3.44 6.81 -2.91 -0.02 3.42 16 27 H 0.05 2.28 7.01 -2.39 -0.02 2.27 16 28 H 0.08 2.94 5.86 -2.39 -0.01 2.93 16 29 H 0.00 0.09 5.47 -2.39 -0.01 0.07 16 30 H 0.02 1.07 7.44 -2.39 -0.02 1.05 16 31 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 32 H 0.08 2.48 7.81 -2.38 -0.02 2.46 16 33 H 0.05 1.44 6.30 -2.39 -0.02 1.43 16 34 H 0.13 3.01 7.97 -2.91 -0.02 2.98 16 35 H 0.14 2.52 6.02 -2.91 -0.02 2.50 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 1.38 6.18 -2.39 -0.01 1.36 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -67.10 337.87 3.08 -64.02 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.92 Total: 21.01 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 4.20 Total: -45.22 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.93 Total: -86.13 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.89 Total: 46.32 kcal Total: -67.10 3.08 -64.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459561197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.125 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds