Wall clock time and date at job start Mon Mar 30 2020 01:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99693 * 2 1 4 4 H 1.48499 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47347 * 300.00549 * 3 2 1 6 6 H 1.48503 * 109.47049 * 60.00574 * 3 2 1 7 7 C 1.38809 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.47672 * 134.45522 * 0.02562 * 9 7 2 11 11 C 1.53508 * 85.97028 * 155.65839 * 10 9 7 12 12 C 1.52633 * 113.59910 * 268.95654 * 11 10 9 13 13 C 1.53158 * 109.25210 * 284.72121 * 12 11 10 14 14 C 1.52978 * 109.42902 * 302.29255 * 13 12 11 15 15 C 1.52968 * 109.69437 * 61.74187 * 14 13 12 16 16 C 1.52631 * 113.59657 * 137.79551 * 11 10 9 17 17 C 1.47671 * 134.45338 * 179.97438 * 9 7 2 18 18 H 1.08997 * 113.78959 * 90.07758 * 17 9 7 19 19 C 1.50697 * 113.79189 * 318.60653 * 17 9 7 20 20 C 1.38233 * 119.99974 * 343.38057 * 19 17 9 21 21 C 1.38236 * 119.99678 * 179.76074 * 20 19 17 22 22 C 1.38234 * 120.00282 * 0.50927 * 21 20 19 23 23 C 1.38240 * 119.99885 * 359.73892 * 22 21 20 24 24 C 1.38235 * 119.99812 * 163.64746 * 19 17 9 25 25 H 0.97000 * 120.00365 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.79010 * 41.39766 * 10 9 7 27 27 H 1.08993 * 113.79378 * 269.92320 * 10 9 7 28 28 H 1.08994 * 109.49855 * 164.79298 * 12 11 10 29 29 H 1.08997 * 109.51440 * 44.65451 * 12 11 10 30 30 H 1.09002 * 109.47887 * 182.30145 * 13 12 11 31 31 H 1.08995 * 109.47905 * 62.28402 * 13 12 11 32 32 H 1.09007 * 109.42872 * 181.81020 * 14 13 12 33 33 H 1.09001 * 109.43425 * 301.66569 * 14 13 12 34 34 H 1.09004 * 109.48020 * 58.23762 * 15 14 13 35 35 H 1.09000 * 109.48195 * 178.25556 * 15 14 13 36 36 H 1.08997 * 109.51363 * 315.34356 * 16 11 10 37 37 H 1.09001 * 109.54425 * 195.22481 * 16 11 10 38 38 H 1.07993 * 120.00543 * 359.97438 * 20 19 17 39 39 H 1.07999 * 119.99793 * 180.22912 * 21 20 19 40 40 H 1.08002 * 120.00483 * 179.72435 * 22 21 20 41 41 H 1.07996 * 120.00228 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00102 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1043 -2.7567 -0.0005 11 6 0.3485 -4.0808 -0.6317 12 6 0.3606 -4.0576 -2.1578 13 6 -1.0780 -4.1467 -2.6757 14 6 -1.7335 -5.4210 -2.1403 15 6 -1.7846 -5.3716 -0.6123 16 6 -0.3588 -5.3050 -0.0568 17 6 1.7215 -3.8107 -0.0015 18 1 1.8389 -4.2351 0.9956 19 6 2.8804 -4.1187 -0.9143 20 6 3.2464 -3.2161 -1.8952 21 6 4.3125 -3.4965 -2.7293 22 6 5.0060 -4.6841 -2.5893 23 6 4.6367 -5.5890 -1.6117 24 6 3.5738 -5.3063 -0.7742 25 1 -0.4851 0.8400 0.0004 26 1 -0.7168 -2.1420 -0.6601 27 1 -0.5297 -2.8678 0.9967 28 1 0.9347 -4.9060 -2.5300 29 1 0.8153 -3.1295 -2.5042 30 1 -1.0712 -4.1716 -3.7654 31 1 -1.6412 -3.2777 -2.3355 32 1 -2.7466 -5.5008 -2.5347 33 1 -1.1528 -6.2877 -2.4561 34 1 -2.3397 -4.4886 -0.2955 35 1 -2.2800 -6.2667 -0.2360 36 1 -0.3949 -5.2279 1.0298 37 1 0.1845 -6.2065 -0.3400 38 1 2.7017 -2.2904 -2.0077 39 1 4.6009 -2.7897 -3.4932 40 1 5.8361 -4.9052 -3.2439 41 1 5.1781 -6.5170 -1.5026 42 1 3.2848 -6.0136 -0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459732422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:36 Heat of formation + Delta-G solvation = 60.163901 kcal Electronic energy + Delta-G solvation = -21830.098816 eV Core-core repulsion = 18968.690002 eV Total energy + Delta-G solvation = -2861.408814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09099 -37.98995 -35.46185 -32.24783 -30.67011 -30.49511 -30.04576 -28.86786 -25.86198 -24.77802 -22.56263 -21.84846 -21.63724 -21.07575 -19.74276 -17.45114 -16.98966 -15.86343 -15.13891 -14.77850 -14.71591 -14.06575 -13.99428 -13.81695 -13.35742 -13.06686 -12.96675 -12.77689 -12.19930 -12.05972 -11.74550 -11.54445 -11.30083 -11.15663 -10.88540 -10.84242 -10.69332 -10.51978 -10.43505 -10.34532 -10.11596 -9.61780 -9.55060 -9.21133 -9.14504 -8.76451 -8.34551 -8.00862 -6.82502 -5.73656 -3.05235 1.89751 1.98579 3.39260 3.46067 3.47573 4.30322 4.49936 5.09211 5.13659 5.22050 5.34889 5.39690 5.42411 5.49525 5.60085 5.64294 5.73940 5.79936 5.90947 5.96932 6.04157 6.04889 6.09148 6.14272 6.19591 6.39059 6.43894 6.46566 6.55593 6.56304 6.62033 6.68799 6.75172 6.83257 6.95467 7.00422 7.04469 7.13456 7.26722 7.34157 7.56744 7.63866 7.66931 8.03306 9.09372 9.74440 10.64731 11.42741 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.009332 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.384131 B = 2999.635590 C = 4512.957508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.174 3.826 11 C -0.091 4.091 12 C -0.080 4.080 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.103 4.103 17 C 0.177 3.823 18 H 0.052 0.948 19 C -0.064 4.064 20 C -0.085 4.085 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.123 4.123 25 H 0.252 0.748 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.147 0.853 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -11.733 -4.340 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.323 5.323 10 C 0.049 3.951 11 C -0.092 4.092 12 C -0.117 4.117 13 C -0.156 4.156 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.141 4.141 17 C 0.070 3.930 18 H 0.069 0.931 19 C -0.066 4.066 20 C -0.103 4.103 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.142 4.142 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.191 -11.349 -4.331 12.206 hybrid contribution 0.615 0.939 0.263 1.153 sum 1.806 -10.410 -4.068 11.322 Atomic orbital electron populations 1.69834 1.04873 1.25022 1.56767 1.24726 0.95571 0.97214 1.02762 0.86162 0.78899 0.84225 0.77246 1.20491 1.21789 1.21868 1.19003 0.90284 0.81848 1.43241 0.90333 1.46026 1.02192 0.98364 1.85764 1.22246 0.87637 0.88780 0.96475 1.22379 0.95190 0.95967 0.95654 1.21142 0.95430 1.01706 0.93468 1.21540 0.97154 0.97841 0.99031 1.21479 0.99632 0.98195 0.95885 1.21490 0.97176 1.01162 0.95419 1.21432 0.95357 0.97768 0.99548 1.21232 0.90192 0.87375 0.94169 0.93102 1.20296 0.96460 0.93470 0.96339 1.21546 0.95538 1.00124 0.93103 1.21183 0.96908 0.96975 1.00047 1.20982 1.00242 0.95080 0.99068 1.20926 0.98083 0.99260 0.96930 1.20945 0.96199 0.97287 0.99738 0.93815 0.90745 0.95920 0.93247 0.90770 0.92983 0.91550 0.92971 0.92726 0.91732 0.93004 0.92306 0.92834 0.83587 0.86918 0.87270 0.87164 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 11.39 55.49 0.63 -25.89 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.22 -5.81 8.50 -15.06 -0.13 -5.94 16 8 H 0.08 2.11 7.59 -52.49 -0.40 1.71 16 9 N -0.60 -14.59 2.97 -173.59 -0.52 -15.10 16 10 C 0.17 3.95 6.26 -3.14 -0.02 3.93 16 11 C -0.09 -1.67 0.71 -154.47 -0.11 -1.77 16 12 C -0.08 -1.41 3.70 -26.84 -0.10 -1.51 16 13 C -0.12 -1.84 5.85 -26.66 -0.16 -2.00 16 14 C -0.11 -1.54 5.86 -26.76 -0.16 -1.70 16 15 C -0.11 -1.60 5.85 -26.67 -0.16 -1.76 16 16 C -0.10 -1.58 5.10 -26.84 -0.14 -1.72 16 17 C 0.18 3.60 4.05 -68.21 -0.28 3.32 16 18 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 19 C -0.06 -1.21 4.32 -104.63 -0.45 -1.66 16 20 C -0.09 -1.65 7.23 -39.58 -0.29 -1.93 16 21 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 22 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 23 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.12 -2.01 9.74 -39.58 -0.39 -2.40 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 26 H 0.07 1.88 6.49 -51.93 -0.34 1.54 16 27 H 0.02 0.54 8.05 -51.93 -0.42 0.13 16 28 H 0.05 0.84 7.79 -51.93 -0.40 0.44 16 29 H 0.07 1.51 6.45 -51.93 -0.34 1.17 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.14 7.47 -51.93 -0.39 0.75 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.15 3.23 5.51 -52.49 -0.29 2.94 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -28.54 322.85 -10.46 -39.00 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.77 Total: 2.98 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -3.65 Total: -22.83 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.12 Total: -40.99 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.54 -10.46 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.161 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds