Wall clock time and date at job start Mon Mar 30 2020 01:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47372 * 179.71955 * 3 2 1 5 5 H 1.48500 * 109.47258 * 299.72607 * 3 2 1 6 6 H 1.48504 * 109.46819 * 59.72526 * 3 2 1 7 7 C 1.39951 * 120.00039 * 179.72167 * 2 1 3 8 8 H 1.08003 * 119.99911 * 162.28822 * 7 2 1 9 9 C 1.41394 * 119.99753 * 342.28979 * 7 2 1 10 10 C 1.40712 * 120.24678 * 335.44982 * 9 7 2 11 11 C 1.37610 * 119.74548 * 179.76586 * 10 9 7 12 12 C 1.38636 * 120.24809 * 0.48972 * 11 10 9 13 13 C 1.50710 * 119.75131 * 179.74386 * 12 11 10 14 14 N 1.46905 * 109.46639 * 270.02126 * 13 12 11 15 15 C 1.46897 * 110.99732 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.26418 * 35.48849 * 15 14 13 17 17 C 1.52877 * 109.26503 * 276.02454 * 15 14 13 18 18 C 1.53298 * 108.58914 * 184.84291 * 17 15 14 19 19 C 1.52874 * 108.58080 * 74.44468 * 18 17 15 20 20 C 1.52710 * 110.15224 * 305.47795 * 19 18 17 21 21 H 1.09009 * 114.91135 * 232.15789 * 20 19 18 22 22 C 1.53643 * 116.03336 * 90.20266 * 20 19 18 23 23 C 1.52063 * 120.52619 * 21.46881 * 20 19 18 24 24 H 1.08994 * 115.31729 * 211.01850 * 23 20 19 25 25 C 1.38637 * 120.50085 * 359.76043 * 12 11 10 26 26 C 1.37615 * 120.24816 * 0.02562 * 25 12 11 27 27 H 0.97002 * 119.99504 * 0.27831 * 1 2 3 28 28 H 1.08007 * 120.12341 * 359.97438 * 10 9 7 29 29 H 1.08006 * 119.87860 * 180.22755 * 11 10 9 30 30 H 1.08998 * 109.47056 * 30.01650 * 13 12 11 31 31 H 1.08993 * 109.47165 * 150.02211 * 13 12 11 32 32 H 1.00892 * 111.00207 * 56.04359 * 14 13 12 33 33 H 1.09002 * 109.61624 * 304.57535 * 17 15 14 34 34 H 1.09003 * 109.61673 * 65.11693 * 17 15 14 35 35 H 1.09003 * 109.62003 * 314.71478 * 18 17 15 36 36 H 1.09002 * 109.76913 * 194.26064 * 18 17 15 37 37 H 1.09008 * 109.36117 * 185.26793 * 19 18 17 38 38 H 1.09002 * 109.36059 * 65.68524 * 19 18 17 39 39 H 1.09006 * 117.54096 * 140.93633 * 22 20 19 40 40 H 1.09007 * 117.59885 * 355.66462 * 22 20 19 41 41 H 1.08000 * 119.87353 * 179.97438 * 25 12 11 42 42 H 1.08000 * 120.12814 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 0.0069 5 1 1.8886 2.3935 -1.2158 6 1 1.8784 2.3993 1.2092 7 6 2.0080 -1.2120 0.0059 8 1 3.0496 -1.2355 -0.2786 9 6 1.3512 -2.4056 0.3842 10 6 0.2202 -2.3581 1.2200 11 6 -0.4139 -3.5258 1.5778 12 6 0.0637 -4.7465 1.1264 13 6 -0.6360 -6.0188 1.5299 14 7 -0.0489 -6.5259 2.7774 15 6 -0.7072 -7.7686 3.2019 16 1 -0.9753 -8.3525 2.3213 17 6 -1.9752 -7.4260 3.9842 18 6 -2.5834 -8.7260 4.5228 19 6 -1.7334 -9.2117 5.6969 20 6 -0.2723 -9.3393 5.2714 21 1 0.1863 -10.3043 5.4875 22 6 0.5985 -8.0887 5.4667 23 6 0.2506 -8.5742 4.0657 24 1 1.0558 -9.0627 3.5172 25 6 1.1803 -4.8056 0.3067 26 6 1.8276 -3.6503 -0.0673 27 1 -0.4849 0.8401 -0.0041 28 1 -0.1507 -1.4084 1.5765 29 1 -1.2844 -3.4915 2.2163 30 1 -1.6963 -5.8176 1.6829 31 1 -0.5174 -6.7639 0.7433 32 1 -0.0885 -5.8285 3.5054 33 1 -1.7253 -6.7669 4.8156 34 1 -2.6899 -6.9332 3.3251 35 1 -2.5876 -9.4812 3.7368 36 1 -3.6037 -8.5435 4.8604 37 1 -2.0988 -10.1832 6.0300 38 1 -1.8097 -8.4985 6.5176 39 1 1.6221 -8.2360 5.8115 40 1 0.1082 -7.1823 5.8223 41 1 1.5439 -5.7621 -0.0388 42 1 2.6975 -3.6987 -0.7056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459795018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:24 Heat of formation + Delta-G solvation = 22.402399 kcal Electronic energy + Delta-G solvation = -20033.134547 eV Core-core repulsion = 17170.088271 eV Total energy + Delta-G solvation = -2863.046276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80885 -37.65410 -35.25778 -33.56639 -32.85233 -30.63311 -29.24450 -28.45812 -26.04769 -24.22753 -22.89252 -22.55360 -20.95999 -20.71556 -19.87239 -18.50136 -17.26246 -16.49754 -15.43563 -15.03467 -14.66510 -14.45930 -14.00029 -13.78911 -13.62848 -13.45511 -13.11832 -12.76881 -12.44221 -12.12099 -11.90745 -11.77353 -11.46667 -11.41278 -11.17072 -11.03868 -10.92876 -10.84472 -10.53591 -10.43646 -10.36486 -9.88485 -9.74445 -9.48360 -9.36321 -9.10699 -7.94050 -7.41203 -7.25943 -6.74489 -4.32295 2.75297 3.07945 3.12031 3.13750 3.19085 3.73441 3.94588 4.45215 4.58013 4.68128 4.73659 4.90763 5.06280 5.15016 5.17832 5.37636 5.47338 5.51016 5.62670 5.74412 5.82494 5.84006 5.86438 5.93440 6.01677 6.04931 6.13598 6.23390 6.26368 6.31645 6.34754 6.42435 6.46073 6.97621 7.10126 7.31141 7.41305 7.48639 7.65031 7.80995 7.93555 8.08922 8.18209 8.33781 8.67229 8.92643 9.01192 10.20135 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.003292 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.745337 B = 8502.907504 C = 8581.373623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.212 4.212 13 C 0.125 3.875 14 N -0.677 5.677 15 C 0.117 3.883 16 H 0.077 0.923 17 C -0.152 4.152 18 C -0.115 4.115 19 C -0.088 4.088 20 C -0.157 4.157 21 H 0.098 0.902 22 C -0.174 4.174 23 C -0.116 4.116 24 H 0.098 0.902 25 C -0.069 4.069 26 C -0.228 4.228 27 H 0.279 0.721 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.340 0.660 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -12.791 8.649 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.185 4.185 11 C -0.114 4.114 12 C -0.214 4.214 13 C -0.003 4.003 14 N -0.306 5.306 15 C 0.007 3.993 16 H 0.095 0.905 17 C -0.191 4.191 18 C -0.153 4.153 19 C -0.125 4.125 20 C -0.176 4.176 21 H 0.116 0.884 22 C -0.211 4.211 23 C -0.134 4.134 24 H 0.116 0.884 25 C -0.088 4.088 26 C -0.248 4.248 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.584 -12.945 8.297 15.787 hybrid contribution -0.478 1.174 0.291 1.300 sum -4.062 -11.771 8.587 15.126 Atomic orbital electron populations 1.69842 1.07588 1.29000 1.35533 1.25911 0.94704 1.01291 0.92258 0.86295 0.81066 0.81050 0.78506 1.18395 1.20042 1.19738 1.19632 0.98083 0.91376 1.40177 0.90470 1.17624 0.91058 0.92013 0.88347 1.21265 0.99373 0.96658 1.01245 1.20513 0.98346 0.92940 0.99624 1.18905 1.01542 0.92373 1.08581 1.20580 0.94237 0.94798 0.90676 1.60644 1.57456 1.05898 1.06637 1.20831 0.90192 0.92206 0.96080 0.90521 1.22370 0.98591 0.97786 1.00399 1.21518 0.98313 0.97413 0.98032 1.21033 0.92811 1.01013 0.97670 1.22257 0.95532 0.96096 1.03689 0.88360 1.22988 1.00153 0.97613 1.00317 1.21711 1.00838 1.01056 0.89841 0.88360 1.20331 0.94881 0.96241 0.97304 1.20977 1.03703 0.92959 1.07161 0.91015 0.86614 0.90011 0.96332 0.92173 0.84135 0.91757 0.91804 0.91751 0.92205 0.91941 0.91926 0.89246 0.89004 0.89502 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.68 10.96 55.55 0.61 -20.07 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.80 29.60 -169.99 -5.03 13.76 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.44 9.05 -37.74 -0.34 -12.79 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.11 3.02 5.57 -106.83 -0.60 2.43 16 10 C -0.17 -4.34 8.70 -38.88 -0.34 -4.67 16 11 C -0.10 -2.21 9.67 -39.66 -0.38 -2.60 16 12 C -0.21 -4.61 5.42 -104.32 -0.56 -5.18 16 13 C 0.12 2.19 5.59 -4.97 -0.03 2.17 16 14 N -0.68 -10.67 6.21 -108.56 -0.67 -11.34 16 15 C 0.12 1.50 2.52 -68.25 -0.17 1.33 16 16 H 0.08 1.00 7.79 -51.93 -0.40 0.60 16 17 C -0.15 -1.75 4.93 -26.64 -0.13 -1.88 16 18 C -0.11 -1.11 5.93 -26.64 -0.16 -1.26 16 19 C -0.09 -0.80 5.83 -26.95 -0.16 -0.96 16 20 C -0.16 -1.58 6.19 -90.91 -0.56 -2.14 16 21 H 0.10 0.90 8.14 -51.92 -0.42 0.47 16 22 C -0.17 -1.94 9.66 -26.76 -0.26 -2.19 16 23 C -0.12 -1.38 5.59 -91.93 -0.51 -1.89 16 24 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 25 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 26 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.12 3.13 6.16 -52.48 -0.32 2.80 16 29 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.02 0.32 7.39 -51.93 -0.38 -0.07 16 31 H 0.06 1.03 7.99 -51.93 -0.41 0.61 16 32 H 0.34 5.51 8.42 -39.30 -0.33 5.18 16 33 H 0.06 0.76 7.02 -51.93 -0.36 0.39 16 34 H 0.06 0.77 7.52 -51.93 -0.39 0.38 16 35 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.05 7.26 -51.92 -0.38 0.68 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -26.76 334.08 -11.88 -38.63 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.76 Total: 9.84 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -5.06 Total: -35.86 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: -0.07 Total: -31.41 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.76 -11.88 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459795018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.035 kcal (2) G-P(sol) polarization free energy of solvation -26.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds