Wall clock time and date at job start Mon Mar 30 2020 01:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47372 * 179.71955 * 3 2 1 5 5 H 1.48500 * 109.47258 * 299.72607 * 3 2 1 6 6 H 1.48504 * 109.46819 * 59.72526 * 3 2 1 7 7 C 1.39951 * 120.00039 * 179.72167 * 2 1 3 8 8 H 1.08003 * 119.99911 * 162.28822 * 7 2 1 9 9 C 1.41394 * 119.99753 * 342.28979 * 7 2 1 10 10 C 1.40712 * 120.24678 * 335.44982 * 9 7 2 11 11 C 1.37610 * 119.74548 * 179.76586 * 10 9 7 12 12 C 1.38636 * 120.24809 * 0.48972 * 11 10 9 13 13 C 1.50710 * 119.75131 * 179.74386 * 12 11 10 14 14 N 1.46905 * 109.46639 * 270.02126 * 13 12 11 15 15 C 1.46897 * 110.99732 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.26418 * 35.48849 * 15 14 13 17 17 C 1.52877 * 109.26503 * 276.02454 * 15 14 13 18 18 C 1.53298 * 108.58914 * 184.84291 * 17 15 14 19 19 C 1.52874 * 108.58080 * 74.44468 * 18 17 15 20 20 C 1.52710 * 110.15224 * 305.47795 * 19 18 17 21 21 H 1.09009 * 114.91135 * 232.15789 * 20 19 18 22 22 C 1.53643 * 116.03336 * 90.20266 * 20 19 18 23 23 C 1.52063 * 120.52619 * 21.46881 * 20 19 18 24 24 H 1.08994 * 115.31729 * 211.01850 * 23 20 19 25 25 C 1.38637 * 120.50085 * 359.76043 * 12 11 10 26 26 C 1.37615 * 120.24816 * 0.02562 * 25 12 11 27 27 H 0.97002 * 119.99504 * 0.27831 * 1 2 3 28 28 H 1.08007 * 120.12341 * 359.97438 * 10 9 7 29 29 H 1.08006 * 119.87860 * 180.22755 * 11 10 9 30 30 H 1.08998 * 109.47056 * 30.01650 * 13 12 11 31 31 H 1.08993 * 109.47165 * 150.02211 * 13 12 11 32 32 H 1.00892 * 111.00207 * 56.04359 * 14 13 12 33 33 H 1.09002 * 109.61624 * 304.57535 * 17 15 14 34 34 H 1.09003 * 109.61673 * 65.11693 * 17 15 14 35 35 H 1.09003 * 109.62003 * 314.71478 * 18 17 15 36 36 H 1.09002 * 109.76913 * 194.26064 * 18 17 15 37 37 H 1.09008 * 109.36117 * 185.26793 * 19 18 17 38 38 H 1.09002 * 109.36059 * 65.68524 * 19 18 17 39 39 H 1.09006 * 117.54096 * 140.93633 * 22 20 19 40 40 H 1.09007 * 117.59885 * 355.66462 * 22 20 19 41 41 H 1.08000 * 119.87353 * 179.97438 * 25 12 11 42 42 H 1.08000 * 120.12814 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 0.0069 5 1 1.8886 2.3935 -1.2158 6 1 1.8784 2.3993 1.2092 7 6 2.0080 -1.2120 0.0059 8 1 3.0496 -1.2355 -0.2786 9 6 1.3512 -2.4056 0.3842 10 6 0.2202 -2.3581 1.2200 11 6 -0.4139 -3.5258 1.5778 12 6 0.0637 -4.7465 1.1264 13 6 -0.6360 -6.0188 1.5299 14 7 -0.0489 -6.5259 2.7774 15 6 -0.7072 -7.7686 3.2019 16 1 -0.9753 -8.3525 2.3213 17 6 -1.9752 -7.4260 3.9842 18 6 -2.5834 -8.7260 4.5228 19 6 -1.7334 -9.2117 5.6969 20 6 -0.2723 -9.3393 5.2714 21 1 0.1863 -10.3043 5.4875 22 6 0.5985 -8.0887 5.4667 23 6 0.2506 -8.5742 4.0657 24 1 1.0558 -9.0627 3.5172 25 6 1.1803 -4.8056 0.3067 26 6 1.8276 -3.6503 -0.0673 27 1 -0.4849 0.8401 -0.0041 28 1 -0.1507 -1.4084 1.5765 29 1 -1.2844 -3.4915 2.2163 30 1 -1.6963 -5.8176 1.6829 31 1 -0.5174 -6.7639 0.7433 32 1 -0.0885 -5.8285 3.5054 33 1 -1.7253 -6.7669 4.8156 34 1 -2.6899 -6.9332 3.3251 35 1 -2.5876 -9.4812 3.7368 36 1 -3.6037 -8.5435 4.8604 37 1 -2.0988 -10.1832 6.0300 38 1 -1.8097 -8.4985 6.5176 39 1 1.6221 -8.2360 5.8115 40 1 0.1082 -7.1823 5.8223 41 1 1.5439 -5.7621 -0.0388 42 1 2.6975 -3.6987 -0.7056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459795018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:24 Heat of formation + Delta-G solvation = 10.144638 kcal Electronic energy + Delta-G solvation = -20033.666084 eV Core-core repulsion = 17170.088271 eV Total energy + Delta-G solvation = -2863.577812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74369 -39.45929 -36.65287 -35.28540 -33.73510 -32.23518 -31.13985 -29.81342 -27.59877 -25.43409 -24.33616 -23.39015 -22.86404 -21.76111 -21.49546 -19.46397 -19.20583 -17.47944 -17.13878 -16.32890 -15.94475 -15.84421 -15.57572 -15.20379 -14.93131 -14.45104 -14.28639 -14.18652 -13.79808 -13.69727 -13.53730 -13.12767 -12.93334 -12.68742 -12.66809 -12.43697 -12.28419 -12.10692 -11.90623 -11.71225 -11.39996 -11.30792 -11.24160 -11.00307 -10.75323 -10.56406 -9.37658 -9.23465 -9.07450 -8.63374 -6.32246 0.95148 1.17320 1.37730 1.49646 1.53311 2.21093 2.67140 2.86510 3.47167 3.72823 3.81271 3.84412 4.07142 4.16894 4.19653 4.28708 4.36040 4.37264 4.52107 4.58547 4.62595 4.69590 4.72606 4.76986 4.87108 4.96265 5.05495 5.09053 5.11497 5.17615 5.26890 5.28902 5.37105 5.39172 5.39861 5.48242 5.49542 5.72838 5.97540 6.11945 6.23794 6.29850 6.41530 6.56487 6.72108 6.95804 7.05894 8.33892 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.003292 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.745337 B = 8502.907504 C = 8581.373623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.189 4.189 11 C -0.098 4.098 12 C -0.199 4.199 13 C 0.133 3.867 14 N -0.684 5.684 15 C 0.120 3.880 16 H 0.076 0.924 17 C -0.149 4.149 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.139 4.139 21 H 0.112 0.888 22 C -0.180 4.180 23 C -0.131 4.131 24 H 0.092 0.908 25 C -0.073 4.073 26 C -0.245 4.245 27 H 0.287 0.713 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.337 0.663 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -14.176 9.623 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.209 4.209 11 C -0.117 4.117 12 C -0.200 4.200 13 C 0.005 3.995 14 N -0.313 5.313 15 C 0.011 3.989 16 H 0.095 0.905 17 C -0.188 4.188 18 C -0.149 4.149 19 C -0.126 4.126 20 C -0.158 4.158 21 H 0.130 0.870 22 C -0.217 4.217 23 C -0.149 4.149 24 H 0.110 0.890 25 C -0.092 4.092 26 C -0.265 4.265 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.216 -14.357 9.274 17.604 hybrid contribution -0.334 1.440 0.016 1.478 sum -4.550 -12.917 9.290 16.549 Atomic orbital electron populations 1.69887 1.08980 1.30389 1.36000 1.26752 0.95503 1.04477 0.91223 0.85169 0.79381 0.76217 0.78980 1.18306 1.18962 1.18825 1.19853 0.98210 0.92759 1.42445 0.90965 1.17962 0.92010 0.92998 0.89338 1.21239 1.00204 0.97057 1.02390 1.20760 0.98682 0.92673 0.99543 1.19348 1.00523 0.93693 1.06462 1.20462 0.94200 0.92917 0.91908 1.60570 1.58101 1.06721 1.05925 1.20846 0.90869 0.90710 0.96501 0.90544 1.22304 0.97751 0.98775 0.99943 1.21505 0.98875 0.96288 0.98262 1.21077 0.91972 1.02079 0.97431 1.22357 0.96072 0.96066 1.01287 0.86997 1.23015 1.00714 0.98260 0.99748 1.21659 1.01081 1.02016 0.90190 0.89012 1.20638 0.94935 0.96518 0.97099 1.21175 1.04300 0.93330 1.07673 0.90207 0.88342 0.87939 0.95387 0.91216 0.84519 0.92210 0.92432 0.91443 0.91054 0.90113 0.91818 0.88986 0.89539 0.87082 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.16 10.96 21.83 0.24 -43.92 16 2 C 0.03 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 8 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 9 C 0.08 4.42 5.57 -21.29 -0.12 4.31 16 10 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 11 C -0.10 -4.55 9.67 22.22 0.21 -4.33 16 12 C -0.20 -8.45 5.42 -19.67 -0.11 -8.56 16 13 C 0.13 4.43 5.59 85.56 0.48 4.91 16 14 N -0.68 -20.48 6.21 -497.36 -3.09 -23.57 16 15 C 0.12 2.86 2.52 44.57 0.11 2.97 16 16 H 0.08 1.83 7.79 -2.39 -0.02 1.81 16 17 C -0.15 -3.11 4.93 30.65 0.15 -2.96 16 18 C -0.11 -1.83 5.93 30.65 0.18 -1.65 16 19 C -0.09 -1.34 5.83 30.46 0.18 -1.16 16 20 C -0.14 -2.43 6.19 -10.98 -0.07 -2.50 16 21 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 22 C -0.18 -3.72 9.66 30.58 0.30 -3.43 16 23 C -0.13 -2.87 5.59 -11.64 -0.07 -2.93 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 C -0.07 -3.31 9.67 22.22 0.21 -3.09 16 26 C -0.25 -12.53 9.80 22.73 0.22 -12.31 16 27 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 28 H 0.10 5.55 6.16 -2.91 -0.02 5.54 16 29 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 30 H 0.03 0.89 7.39 -2.39 -0.02 0.87 16 31 H 0.07 2.21 7.99 -2.39 -0.02 2.19 16 32 H 0.34 10.50 8.42 -89.70 -0.76 9.75 16 33 H 0.06 1.31 7.02 -2.39 -0.02 1.29 16 34 H 0.06 1.27 7.52 -2.39 -0.02 1.26 16 35 H 0.07 1.09 8.04 -2.39 -0.02 1.07 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 38 H 0.06 0.98 8.06 -2.39 -0.02 0.97 16 39 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.09 1.88 7.26 -2.38 -0.02 1.86 16 41 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 42 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -58.58 334.08 1.96 -56.62 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.24 Total: 36.09 kcal Atomic # 6 Polarization: -68.90 SS G_CDS: 2.54 Total: -66.36 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -2.85 Total: -67.49 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -58.58 1.96 -56.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459795018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.761 kcal (2) G-P(sol) polarization free energy of solvation -58.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds