Wall clock time and date at job start Mon Mar 30 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86805 * 119.99506 * 2 1 4 4 H 1.48499 * 109.46959 * 275.41027 * 3 2 1 5 5 H 1.48494 * 109.47249 * 35.40934 * 3 2 1 6 6 H 1.48502 * 109.47167 * 155.41528 * 3 2 1 7 7 C 1.39862 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00304 * 341.73087 * 7 2 1 9 9 C 1.41142 * 120.00037 * 161.72494 * 7 2 1 10 10 C 1.40882 * 120.15510 * 330.12986 * 9 7 2 11 11 C 1.36339 * 119.83515 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.16005 * 359.97438 * 11 10 9 13 13 N 1.38868 * 119.83832 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99387 * 179.97438 * 13 12 11 15 15 H 1.08994 * 110.54020 * 327.61527 * 14 13 12 16 16 C 1.54963 * 110.52945 * 90.24981 * 14 13 12 17 17 C 1.54887 * 102.77990 * 156.56394 * 16 14 13 18 18 C 1.54267 * 104.19449 * 322.08157 * 17 16 14 19 19 C 1.53879 * 106.59683 * 23.60702 * 18 17 16 20 20 H 1.08999 * 110.03137 * 240.66017 * 19 18 17 21 21 C 1.53001 * 110.02936 * 119.28673 * 19 18 17 22 22 C 1.52999 * 117.50171 * 182.09222 * 21 19 18 23 23 C 1.53000 * 60.03212 * 252.49780 * 22 21 19 24 24 C 1.39558 * 120.31808 * 0.27546 * 12 11 10 25 25 C 1.36345 * 120.15865 * 359.48070 * 24 12 11 26 26 H 0.96994 * 120.00511 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.08121 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.91941 * 180.02562 * 11 10 9 29 29 H 0.96995 * 119.99771 * 0.02562 * 13 12 11 30 30 H 1.09005 * 110.72356 * 38.24451 * 16 14 13 31 31 H 1.09000 * 110.92050 * 274.97114 * 16 14 13 32 32 H 1.08995 * 110.48902 * 203.40422 * 17 16 14 33 33 H 1.08997 * 110.48769 * 80.75800 * 17 16 14 34 34 H 1.09000 * 110.03396 * 264.32561 * 18 17 16 35 35 H 1.09002 * 110.03483 * 142.89300 * 18 17 16 36 36 H 1.09000 * 115.54943 * 327.76530 * 21 19 18 37 37 H 1.09007 * 117.49664 * 359.97438 * 22 21 19 38 38 H 1.08995 * 117.50380 * 144.99590 * 22 21 19 39 39 H 1.09002 * 117.49924 * 107.49796 * 23 22 21 40 40 H 1.09002 * 117.49929 * 252.51588 * 23 22 21 41 41 H 1.08001 * 119.92249 * 179.72832 * 24 12 11 42 42 H 1.08002 * 120.08037 * 180.23743 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6179 0.0000 4 1 2.3760 2.1125 -1.3938 5 1 1.5022 2.6170 0.8112 6 1 3.5930 1.4101 0.5825 7 6 2.0084 -1.2112 0.0005 8 1 1.5094 -2.1229 0.2942 9 6 3.3665 -1.2421 -0.3827 10 6 3.8595 -0.3100 -1.3171 11 6 5.1726 -0.3454 -1.6823 12 6 6.0278 -1.3016 -1.1325 13 7 7.3639 -1.3320 -1.5096 14 6 8.2647 -2.3339 -0.9343 15 1 7.9709 -2.5700 0.0884 16 6 8.2781 -3.6162 -1.8043 17 6 9.6413 -4.2587 -1.4467 18 6 10.5989 -3.0579 -1.3013 19 6 9.7238 -1.8349 -0.9754 20 1 9.8378 -1.0770 -1.7505 21 6 10.1182 -1.2559 0.3849 22 6 9.3190 -0.0579 0.9014 23 6 10.7526 0.1370 0.4035 24 6 5.5451 -2.2313 -0.2103 25 6 4.2355 -2.2046 0.1678 26 1 -0.4850 0.8400 -0.0004 27 1 3.1991 0.4313 -1.7423 28 1 5.5521 0.3687 -2.3981 29 1 7.7008 -0.6894 -2.1534 30 1 8.2360 -3.3638 -2.8639 31 1 7.4559 -4.2787 -1.5337 32 1 9.9745 -4.9175 -2.2485 33 1 9.5702 -4.8059 -0.5067 34 1 11.1366 -2.8940 -2.2352 35 1 11.3044 -3.2390 -0.4905 36 1 10.4712 -1.9798 1.1194 37 1 8.5125 0.3182 0.2719 38 1 9.1462 0.0065 1.9756 39 1 10.8889 0.6411 -0.5533 40 1 11.5229 0.3293 1.1503 41 1 6.2116 -2.9713 0.2078 42 1 3.8642 -2.9223 0.8845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000468476681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:48 Heat of formation + Delta-G solvation = 18.500647 kcal Electronic energy + Delta-G solvation = -20612.508252 eV Core-core repulsion = 17749.292783 eV Total energy + Delta-G solvation = -2863.215469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63650 -39.40457 -37.01579 -35.84568 -34.46348 -31.68476 -31.09317 -29.59829 -28.17805 -25.75435 -23.61340 -23.21591 -22.57180 -22.08391 -21.21549 -20.55724 -19.19509 -18.07750 -17.28143 -16.84659 -16.41422 -15.78217 -15.59285 -15.14635 -14.88709 -14.70425 -14.53477 -14.17251 -14.06258 -13.76575 -13.43159 -13.15260 -12.68435 -12.57246 -12.43644 -12.33248 -12.11303 -12.02987 -11.90863 -11.84308 -11.67677 -11.41438 -11.36140 -10.96463 -10.92135 -10.75522 -10.29362 -9.55402 -8.75916 -8.24404 -6.15616 0.88929 0.99082 1.28285 1.43360 1.51998 2.18600 2.72171 2.80618 2.95338 3.60826 3.71351 3.77132 3.82686 4.15701 4.18850 4.23529 4.30593 4.35879 4.53680 4.58635 4.65134 4.73065 4.74668 4.80639 4.84256 4.88306 4.99156 5.08424 5.09289 5.13208 5.23176 5.27736 5.30089 5.34699 5.38800 5.46028 5.51327 5.58030 5.65447 5.81310 6.01124 6.27289 6.45003 6.71636 6.92870 7.01545 7.23632 8.34975 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.004714 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.857340 B = 5938.084789 C = 6554.501469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.042 3.958 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.491 4.491 8 H 0.047 0.953 9 C 0.025 3.975 10 C -0.199 4.199 11 C -0.161 4.161 12 C 0.134 3.866 13 N -0.737 5.737 14 C 0.161 3.839 15 H 0.069 0.931 16 C -0.142 4.142 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.061 4.061 20 H 0.076 0.924 21 C -0.141 4.141 22 C -0.195 4.195 23 C -0.168 4.168 24 C -0.153 4.153 25 C -0.172 4.172 26 H 0.287 0.713 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.395 0.605 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.060 -1.931 -2.273 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.168 4.168 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.021 3.979 10 C -0.219 4.219 11 C -0.183 4.183 12 C 0.034 3.966 13 N -0.370 5.370 14 C 0.055 3.945 15 H 0.087 0.913 16 C -0.181 4.181 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.080 4.080 20 H 0.094 0.906 21 C -0.159 4.159 22 C -0.232 4.232 23 C -0.205 4.205 24 C -0.175 4.175 25 C -0.192 4.192 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.138 0.862 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 23.869 -1.984 -2.149 24.047 hybrid contribution -0.775 0.806 -0.037 1.119 sum 23.094 -1.178 -2.186 23.227 Atomic orbital electron populations 1.69782 1.09036 1.30648 1.40667 1.26690 0.95238 1.03820 0.91065 0.85511 0.79517 0.77068 0.79043 1.18743 1.20948 1.17882 1.19263 0.94904 0.95158 1.42951 0.93458 1.17715 0.92885 0.94169 0.93096 1.20680 0.96227 1.03010 1.01950 1.20166 0.93238 1.01031 1.03872 1.17428 0.85320 0.96283 0.97577 1.44067 1.05009 1.37808 1.50083 1.21688 0.88726 0.87649 0.96453 0.91257 1.22990 0.97865 0.97134 1.00117 1.22294 0.93895 0.97537 1.01945 1.22117 0.97273 0.92787 1.02451 1.21544 0.93144 0.98048 0.95274 0.90564 1.22445 1.04064 0.91135 0.98251 1.22889 0.95303 1.04083 1.00908 1.23062 0.95404 0.98830 1.03169 1.20254 0.95234 1.00873 1.01144 1.20801 0.93625 1.02205 1.02578 0.90304 0.88961 0.86174 0.76996 0.91712 0.92918 0.90632 0.91291 0.90766 0.90348 0.87155 0.90137 0.89540 0.88606 0.87924 0.86167 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.18 13.93 21.81 0.30 -50.88 16 2 C 0.04 2.43 5.40 85.22 0.46 2.89 16 3 Si 0.96 45.61 24.51 68.60 1.68 47.30 16 4 H -0.26 -11.70 6.70 99.48 0.67 -11.03 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.25 -12.25 6.87 99.48 0.68 -11.57 16 7 C -0.49 -29.25 9.55 23.38 0.22 -29.03 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 9 C 0.02 1.31 5.10 -21.27 -0.11 1.20 16 10 C -0.20 -9.72 7.11 22.47 0.16 -9.56 16 11 C -0.16 -6.61 9.82 22.15 0.22 -6.39 16 12 C 0.13 5.01 6.67 38.67 0.26 5.27 16 13 N -0.74 -20.54 5.04 -313.36 -1.58 -22.12 16 14 C 0.16 3.74 2.14 46.09 0.10 3.84 16 15 H 0.07 1.84 6.09 -2.39 -0.01 1.83 16 16 C -0.14 -3.07 6.58 31.91 0.21 -2.86 16 17 C -0.12 -1.87 6.83 31.67 0.22 -1.66 16 18 C -0.11 -1.52 6.45 31.32 0.20 -1.32 16 19 C -0.06 -1.08 2.83 -10.07 -0.03 -1.11 16 20 H 0.08 1.34 7.52 -2.39 -0.02 1.32 16 21 C -0.14 -2.52 4.89 -10.77 -0.05 -2.57 16 22 C -0.19 -4.26 9.92 30.59 0.30 -3.96 16 23 C -0.17 -2.79 10.19 30.62 0.31 -2.48 16 24 C -0.15 -6.15 9.14 22.15 0.20 -5.94 16 25 C -0.17 -8.20 9.74 22.48 0.22 -7.98 16 26 H 0.29 15.23 8.30 -92.71 -0.77 14.46 16 27 H 0.09 4.57 4.73 -2.91 -0.01 4.56 16 28 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.40 9.69 8.36 -92.71 -0.78 8.91 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.95 7.51 -2.39 -0.02 0.93 16 36 H 0.11 1.80 7.88 -2.39 -0.02 1.78 16 37 H 0.08 2.11 7.87 -2.38 -0.02 2.09 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.10 1.50 8.06 -2.39 -0.02 1.48 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.12 4.19 6.17 -2.91 -0.02 4.18 16 42 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -63.10 330.18 3.47 -59.63 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.17 Total: 27.73 kcal Atomic # 6 Polarization: -64.56 SS G_CDS: 2.89 Total: -61.67 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.27 Total: -72.99 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.68 Total: 47.30 kcal Total: -63.10 3.47 -59.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000468476681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.132 kcal (2) G-P(sol) polarization free energy of solvation -63.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds