Wall clock time and date at job start Mon Mar 30 2020 01:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86800 * 120.00409 * 2 1 4 4 H 1.48504 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46995 * 299.99576 * 3 2 1 6 6 H 1.48502 * 109.47181 * 59.99639 * 3 2 1 7 7 C 1.39867 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00405 * 162.81545 * 7 2 1 9 9 C 1.41135 * 119.99965 * 342.81494 * 7 2 1 10 10 C 1.40889 * 120.15551 * 334.48923 * 9 7 2 11 11 C 1.36338 * 119.83771 * 180.25042 * 10 9 7 12 12 C 1.39573 * 120.16051 * 0.02562 * 11 10 9 13 13 N 1.38861 * 119.84159 * 180.02562 * 12 11 10 14 14 C 1.46496 * 119.99966 * 359.97438 * 13 12 11 15 15 H 1.09001 * 110.01985 * 325.06519 * 14 13 12 16 16 C 1.54267 * 110.03236 * 86.45327 * 14 13 12 17 17 C 1.54898 * 104.19393 * 142.89319 * 16 14 13 18 18 C 1.54888 * 102.74785 * 322.05861 * 17 16 14 19 19 C 1.53870 * 110.03011 * 203.61941 * 14 13 12 20 20 H 1.09004 * 110.03072 * 121.43461 * 19 14 13 21 21 C 1.52991 * 110.03425 * 0.02562 * 19 14 13 22 22 C 1.53005 * 117.49964 * 128.62074 * 21 19 14 23 23 C 1.53001 * 117.50298 * 59.99624 * 21 19 14 24 24 C 1.39562 * 120.31469 * 359.97438 * 12 11 10 25 25 C 1.36341 * 120.16535 * 359.97438 * 24 12 11 26 26 H 0.96999 * 119.99528 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08169 * 0.24344 * 10 9 7 28 28 H 1.07997 * 119.92134 * 180.02562 * 11 10 9 29 29 H 0.97001 * 119.99493 * 179.97438 * 13 12 11 30 30 H 1.08996 * 110.48727 * 261.57396 * 16 14 13 31 31 H 1.09004 * 110.48526 * 24.21655 * 16 14 13 32 32 H 1.08996 * 110.75340 * 80.37792 * 17 16 14 33 33 H 1.09000 * 110.75268 * 203.55938 * 17 16 14 34 34 H 1.09000 * 110.48568 * 156.62111 * 18 17 16 35 35 H 1.09004 * 110.48548 * 279.12898 * 18 17 16 36 36 H 1.09000 * 115.54901 * 274.32587 * 21 19 14 37 37 H 1.08997 * 117.49764 * 0.02562 * 22 21 19 38 38 H 1.09002 * 117.49988 * 145.01950 * 22 21 19 39 39 H 1.09000 * 117.50190 * 214.98102 * 23 21 19 40 40 H 1.09005 * 117.49579 * 359.97438 * 23 21 19 41 41 H 1.08006 * 119.91978 * 180.02562 * 24 12 11 42 42 H 1.07994 * 120.08602 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8845 2.3963 -1.2126 6 1 1.8844 2.3965 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0522 -1.2324 -0.2758 9 6 1.3498 -2.4061 0.3622 10 6 0.2230 -2.3654 1.2069 11 6 -0.4050 -3.5240 1.5563 12 6 0.0661 -4.7483 1.0797 13 7 -0.5790 -5.9243 1.4393 14 6 -1.7507 -5.8779 2.3174 15 1 -1.6372 -5.0781 3.0492 16 6 -3.0282 -5.6528 1.4825 17 6 -4.1015 -6.5169 2.1900 18 6 -3.3041 -7.7767 2.6094 19 6 -1.9261 -7.2283 3.0338 20 1 -1.8982 -7.0843 4.1140 21 6 -0.8216 -8.1963 2.6053 22 6 -0.0274 -8.8959 3.7103 23 6 0.6255 -7.7855 2.8846 24 6 1.1817 -4.7962 0.2426 25 6 1.8192 -3.6455 -0.1159 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1423 -1.4188 1.5769 28 1 -1.2691 -3.4944 2.2034 29 1 -0.2537 -6.7763 1.1091 30 1 -3.3139 -4.6011 1.4983 31 1 -2.8791 -5.9932 0.4577 32 1 -4.4974 -6.0012 3.0649 33 1 -4.9046 -6.7764 1.5003 34 1 -3.7911 -8.2750 3.4477 35 1 -3.2016 -8.4612 1.7673 36 1 -1.0177 -8.7592 1.6927 37 1 -0.2921 -8.6667 4.7425 38 1 0.2990 -9.9192 3.5248 39 1 1.3815 -8.0783 2.1560 40 1 0.7907 -6.8252 3.3733 41 1 1.5406 -5.7471 -0.1229 42 1 2.6821 -3.6840 -0.7641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000468476690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:52 Heat of formation + Delta-G solvation = 40.274352 kcal Electronic energy + Delta-G solvation = -20699.993636 eV Core-core repulsion = 17837.722346 eV Total energy + Delta-G solvation = -2862.271290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.62923 -37.44668 -35.83449 -34.18883 -32.45314 -29.43110 -28.90911 -28.54874 -26.71415 -24.09874 -22.39669 -22.04074 -20.91305 -20.59569 -20.29478 -18.53386 -17.15821 -16.54591 -15.92085 -15.12197 -14.79823 -14.55556 -14.26880 -13.83015 -13.64632 -12.84422 -12.66845 -12.40040 -12.18754 -11.99588 -11.77480 -11.50965 -11.29126 -11.19919 -11.02254 -10.98665 -10.88760 -10.75102 -10.60316 -10.52471 -10.28050 -10.01541 -9.73620 -9.60399 -9.20589 -9.15091 -8.41553 -7.43027 -6.57931 -6.27744 -3.97343 2.94862 3.15489 3.18344 3.23615 3.40166 3.84561 4.09649 4.37842 4.60087 4.70410 4.83725 4.89494 5.06057 5.15121 5.18038 5.46972 5.62446 5.69659 5.70593 5.73158 5.79029 5.85063 5.89672 6.00802 6.03335 6.12622 6.17570 6.30410 6.33423 6.39119 6.41390 6.45361 6.59112 6.99936 7.04663 7.26482 7.42089 7.64380 7.75739 7.92265 8.21355 8.37279 8.59543 8.80317 8.90805 9.11999 9.22234 10.43397 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028703 B = 0.004352 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.258374 B = 6432.152271 C = 7073.095894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.468 4.468 8 H 0.071 0.929 9 C 0.072 3.928 10 C -0.122 4.122 11 C -0.167 4.167 12 C 0.100 3.900 13 N -0.749 5.749 14 C 0.166 3.834 15 H 0.072 0.928 16 C -0.139 4.139 17 C -0.126 4.126 18 C -0.114 4.114 19 C -0.069 4.069 20 H 0.074 0.926 21 C -0.145 4.145 22 C -0.188 4.188 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.185 4.185 26 H 0.274 0.726 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.388 0.612 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -12.860 5.912 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.500 4.500 8 H 0.089 0.911 9 C 0.069 3.931 10 C -0.142 4.142 11 C -0.189 4.189 12 C 0.003 3.997 13 N -0.385 5.385 14 C 0.058 3.942 15 H 0.090 0.910 16 C -0.179 4.179 17 C -0.164 4.164 18 C -0.151 4.151 19 C -0.088 4.088 20 H 0.092 0.908 21 C -0.164 4.164 22 C -0.225 4.225 23 C -0.197 4.197 24 C -0.185 4.185 25 C -0.205 4.205 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.224 0.776 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.685 -12.600 5.999 15.069 hybrid contribution 0.415 0.533 -0.251 0.721 sum -5.270 -12.066 5.748 14.367 Atomic orbital electron populations 1.69863 1.07306 1.28336 1.38324 1.25766 0.94635 1.00762 0.92833 0.86395 0.80987 0.81768 0.78260 1.18688 1.20333 1.20035 1.19383 0.97570 0.91318 1.41683 0.91054 1.17478 0.92547 0.91963 0.91127 1.20928 0.98120 0.96373 0.98760 1.20115 1.01755 0.92014 1.05007 1.17383 0.95271 0.85916 1.01156 1.44287 1.32182 1.05923 1.56130 1.21168 0.85849 0.95435 0.91705 0.91028 1.22951 0.95150 0.99875 0.99902 1.22471 0.97606 0.96252 1.00051 1.22378 0.94722 0.97449 1.00584 1.21629 0.93437 0.94099 0.99613 0.90809 1.22199 0.93086 1.01441 0.99642 1.23071 1.05445 0.97498 0.96493 1.22944 0.94734 0.99191 1.02791 1.19773 0.98239 0.96876 1.03610 1.20541 1.02607 0.92722 1.04649 0.91509 0.86592 0.89446 0.77600 0.91635 0.91280 0.91752 0.91914 0.92044 0.91643 0.88192 0.89244 0.89416 0.89099 0.88059 0.89866 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.85 10.97 55.54 0.61 -21.24 16 2 C 0.07 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.90 19.53 29.59 -169.99 -5.03 14.50 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 8 H 0.07 1.91 7.90 -52.48 -0.41 1.50 16 9 C 0.07 1.96 5.57 -106.79 -0.59 1.37 16 10 C -0.12 -3.22 8.63 -39.26 -0.34 -3.56 16 11 C -0.17 -3.90 9.13 -39.77 -0.36 -4.26 16 12 C 0.10 2.15 6.67 -83.69 -0.56 1.59 16 13 N -0.75 -12.65 3.69 -50.96 -0.19 -12.84 16 14 C 0.17 2.45 2.78 -66.82 -0.19 2.26 16 15 H 0.07 1.16 6.48 -51.93 -0.34 0.83 16 16 C -0.14 -1.99 6.53 -25.07 -0.16 -2.15 16 17 C -0.13 -1.40 6.91 -24.73 -0.17 -1.57 16 18 C -0.11 -1.18 6.36 -25.07 -0.16 -1.34 16 19 C -0.07 -0.81 3.10 -89.51 -0.28 -1.09 16 20 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 21 C -0.15 -1.65 3.77 -90.62 -0.34 -1.99 16 22 C -0.19 -1.96 10.18 -26.73 -0.27 -2.23 16 23 C -0.16 -1.97 7.81 -26.73 -0.21 -2.18 16 24 C -0.16 -3.65 9.82 -39.77 -0.39 -4.05 16 25 C -0.18 -4.63 9.74 -39.26 -0.38 -5.01 16 26 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 27 H 0.12 3.19 6.19 -52.49 -0.32 2.87 16 28 H 0.09 1.88 6.21 -52.49 -0.33 1.55 16 29 H 0.39 6.05 5.65 -40.82 -0.23 5.82 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.67 7.64 -51.93 -0.40 0.27 16 36 H 0.10 1.10 7.80 -51.93 -0.41 0.70 16 37 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.47 7.94 -51.93 -0.41 1.06 16 41 H 0.08 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -27.54 329.87 -11.09 -38.63 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.61 Total: 11.57 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -4.84 Total: -35.59 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.42 Total: -34.08 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.54 -11.09 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000468476690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.903 kcal (2) G-P(sol) polarization free energy of solvation -27.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds