Wall clock time and date at job start Mon Mar 30 2020 02:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00049 * 2 1 4 4 H 1.08997 * 109.45949 * 359.70418 * 3 2 1 5 5 C 1.53035 * 109.46350 * 239.72162 * 3 2 1 6 6 C 1.53121 * 109.27874 * 180.80144 * 5 3 2 7 7 C 1.53116 * 109.15637 * 57.65655 * 6 5 3 8 8 C 1.53038 * 109.27993 * 302.34281 * 7 6 5 9 9 N 1.46843 * 109.46293 * 119.66662 * 3 2 1 10 10 C 1.46903 * 111.00470 * 305.85833 * 9 3 2 11 11 C 1.50698 * 109.47168 * 169.99590 * 10 9 3 12 12 C 1.38635 * 119.75379 * 269.72655 * 11 10 9 13 13 C 1.37613 * 120.24929 * 179.76795 * 12 11 10 14 14 C 1.40712 * 119.74369 * 0.52592 * 13 12 11 15 15 C 1.41404 * 120.24190 * 179.74628 * 14 13 12 16 16 H 1.07998 * 119.99449 * 150.20571 * 15 14 13 17 17 C 1.39944 * 120.00327 * 330.21387 * 15 14 13 18 18 N 1.30812 * 120.00387 * 161.73199 * 17 15 14 19 19 Si 1.86800 * 119.99440 * 341.73004 * 17 15 14 20 20 H 1.48496 * 109.47218 * 95.41550 * 19 17 15 21 21 H 1.48503 * 109.46826 * 215.41243 * 19 17 15 22 22 H 1.48497 * 109.47683 * 335.41039 * 19 17 15 23 23 C 1.40715 * 119.51591 * 359.72884 * 14 13 12 24 24 C 1.37619 * 119.73953 * 359.97438 * 23 14 13 25 25 H 1.08001 * 119.99781 * 180.27545 * 1 2 3 26 26 H 1.07998 * 120.00060 * 0.27416 * 1 2 3 27 27 H 1.08001 * 120.00173 * 179.72003 * 2 1 3 28 28 H 1.08996 * 109.50793 * 300.74802 * 5 3 2 29 29 H 1.09010 * 109.49944 * 60.86285 * 5 3 2 30 30 H 1.08998 * 109.52138 * 177.56061 * 6 5 3 31 31 H 1.09003 * 109.52355 * 297.68705 * 6 5 3 32 32 H 1.09002 * 109.50596 * 62.28965 * 7 6 5 33 33 H 1.09007 * 109.49933 * 182.40480 * 7 6 5 34 34 H 1.09007 * 109.45884 * 179.19648 * 8 7 6 35 35 H 1.09000 * 109.46083 * 299.16358 * 8 7 6 36 36 H 1.09001 * 109.46798 * 290.00098 * 10 9 3 37 37 H 1.09002 * 109.47030 * 49.99832 * 10 9 3 38 38 H 1.08006 * 119.87041 * 359.97438 * 12 11 10 39 39 H 1.08006 * 120.12853 * 180.23618 * 13 12 11 40 40 H 0.96996 * 120.00640 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.13039 * 180.02562 * 23 14 13 42 42 H 1.08000 * 119.87276 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3551 2.1334 -0.0053 5 6 2.9486 1.3829 -1.2461 6 6 3.7271 2.7014 -1.2316 7 6 4.5543 2.7824 0.0543 8 6 3.6228 2.6640 1.2627 9 7 2.9017 1.3862 1.2030 10 6 2.1018 1.1760 2.4172 11 6 3.0193 1.0211 3.6026 12 6 3.4689 -0.2394 3.9645 13 6 4.3108 -0.3921 5.0423 14 6 4.7062 0.7360 5.7846 15 6 5.5667 0.5907 6.8972 16 1 6.2399 1.3908 7.1673 17 6 5.5461 -0.5900 7.6482 18 7 6.5511 -0.8842 8.4322 19 14 4.0833 -1.7458 7.5311 20 1 4.3726 -2.8114 6.5382 21 1 3.8315 -2.3616 8.8588 22 1 2.8829 -0.9835 7.1035 23 6 4.2395 2.0099 5.4113 24 6 3.4031 2.1396 4.3261 25 1 -0.5400 -0.9353 0.0045 26 1 -0.5400 0.9353 -0.0045 27 1 1.8501 -0.9353 0.0046 28 1 3.6482 0.5472 -1.2484 29 1 2.3247 1.3385 -2.1389 30 1 4.3911 2.7418 -2.0951 31 1 3.0286 3.5373 -1.2699 32 1 5.2793 1.9686 0.0725 33 1 5.0778 3.7378 0.0906 34 1 4.2104 2.7070 2.1798 35 1 2.9070 3.4859 1.2513 36 1 1.4471 2.0333 2.5739 37 1 1.4994 0.2747 2.3038 38 1 3.1598 -1.1044 3.3964 39 1 4.6629 -1.3746 5.3203 40 1 6.5367 -1.7023 8.9531 41 1 4.5371 2.8826 5.9737 42 1 3.0440 3.1164 4.0375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489423302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:54 Heat of formation + Delta-G solvation = 28.371158 kcal Electronic energy + Delta-G solvation = -20694.240065 eV Core-core repulsion = 17831.452613 eV Total energy + Delta-G solvation = -2862.787451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.40408 -37.64343 -34.21876 -34.04997 -32.95689 -30.41597 -29.78870 -29.51057 -26.91575 -24.25790 -23.19852 -22.14860 -21.43903 -19.92951 -19.73892 -19.55262 -17.38596 -16.11389 -15.65660 -15.13759 -14.60512 -14.47236 -14.14969 -13.86614 -13.57259 -13.46541 -13.37955 -13.06661 -12.69516 -12.33082 -12.15447 -11.80519 -11.68429 -11.38922 -11.25085 -11.02599 -10.76698 -10.70288 -10.61213 -10.40423 -10.24224 -10.13101 -9.73590 -9.50497 -9.36115 -9.08180 -7.99327 -7.65526 -7.45130 -6.92139 -4.44587 2.22342 2.60351 2.73083 3.13597 3.23974 3.34395 4.01347 4.17886 4.57821 4.77068 4.92167 4.99038 5.12417 5.23301 5.33113 5.46102 5.50819 5.63880 5.69019 5.74702 5.80998 5.84418 5.94506 5.97875 6.05280 6.14502 6.17459 6.18613 6.24446 6.38211 6.45570 6.58135 6.60504 6.69201 6.88359 6.93928 7.21456 7.39791 7.44276 7.49311 7.65892 7.86736 7.93538 8.16757 8.39318 8.69974 8.84160 10.10580 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.004764 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.931658 B = 5876.489436 C = 6480.867343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C 0.109 3.891 4 H 0.037 0.963 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.117 4.117 8 C 0.055 3.945 9 N -0.523 5.523 10 C 0.119 3.881 11 C -0.206 4.206 12 C -0.053 4.053 13 C -0.239 4.239 14 C 0.095 3.905 15 C -0.450 4.450 16 H 0.089 0.911 17 C 0.085 3.915 18 N -0.811 5.811 19 Si 0.912 3.088 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.245 1.245 23 C -0.210 4.210 24 C -0.076 4.076 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.284 0.716 41 H 0.098 0.902 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 3.092 -15.179 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.149 4.149 3 C 0.001 3.999 4 H 0.054 0.946 5 C -0.145 4.145 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.073 4.073 9 N -0.248 5.248 10 C -0.008 4.008 11 C -0.208 4.208 12 C -0.072 4.072 13 C -0.258 4.258 14 C 0.092 3.908 15 C -0.478 4.478 16 H 0.107 0.893 17 C -0.134 4.134 18 N -0.435 5.435 19 Si 0.739 3.261 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.168 1.168 23 C -0.230 4.230 24 C -0.095 4.095 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.131 0.869 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.819 2.604 -15.000 17.115 hybrid contribution -1.062 0.012 0.183 1.078 sum -8.881 2.617 -14.818 17.473 Atomic orbital electron populations 1.23811 0.95890 1.01623 1.02377 1.22904 0.95438 0.98560 0.98011 1.20778 0.93317 0.94188 0.91623 0.94559 1.21566 0.98463 0.98400 0.96035 1.21580 0.98772 0.97322 0.98060 1.21597 0.98191 1.01809 0.93905 1.22129 0.96463 0.89014 0.99678 1.62048 1.28323 1.33360 1.01078 1.20750 0.93146 0.99381 0.87481 1.18880 1.08273 0.93541 1.00103 1.20395 0.95898 0.95377 0.95550 1.21019 1.07010 0.98027 0.99773 1.17732 0.89656 0.91304 0.92105 1.19501 1.17739 1.01223 1.09372 0.89298 1.26141 0.96537 0.97253 0.93437 1.69695 1.28659 1.23836 1.21340 0.86307 0.83345 0.79983 0.76505 1.19697 1.21987 1.16781 1.20973 1.04131 0.97086 1.00772 1.20481 0.97736 0.95877 0.95379 0.88405 0.88988 0.86862 0.90939 0.92030 0.92063 0.92649 0.90997 0.91917 0.89141 0.95922 0.95967 0.91102 0.89035 0.88380 0.90533 0.88387 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.26 29.01 0.41 -1.71 16 2 C -0.13 -1.57 7.15 -36.03 -0.26 -1.83 16 3 C 0.11 1.40 2.21 -68.88 -0.15 1.24 16 4 H 0.04 0.47 7.78 -51.93 -0.40 0.07 16 5 C -0.11 -1.20 5.36 -26.65 -0.14 -1.34 16 6 C -0.12 -1.28 6.00 -26.61 -0.16 -1.44 16 7 C -0.12 -1.46 6.09 -26.65 -0.16 -1.62 16 8 C 0.05 0.81 5.15 -3.83 -0.02 0.79 16 9 N -0.52 -8.04 4.48 -229.51 -1.03 -9.07 16 10 C 0.12 2.00 4.90 -4.98 -0.02 1.97 16 11 C -0.21 -4.18 4.91 -104.33 -0.51 -4.70 16 12 C -0.05 -1.17 9.67 -39.66 -0.38 -1.55 16 13 C -0.24 -5.84 7.18 -38.88 -0.28 -6.12 16 14 C 0.10 2.43 5.10 -106.82 -0.55 1.89 16 15 C -0.45 -12.32 9.57 -37.74 -0.36 -12.68 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.08 2.25 5.40 -17.35 -0.09 2.16 16 18 N -0.81 -21.90 13.93 55.55 0.77 -21.13 16 19 Si 0.91 21.16 24.52 -169.99 -4.17 16.99 16 20 H -0.27 -6.12 6.71 56.52 0.38 -5.74 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.24 -5.82 6.86 56.52 0.39 -5.43 16 23 C -0.21 -4.90 9.80 -38.87 -0.38 -5.28 16 24 C -0.08 -1.58 7.83 -39.66 -0.31 -1.89 16 25 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.09 0.94 7.83 -52.49 -0.41 0.52 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.53 5.74 -51.93 -0.30 1.24 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 37 H 0.07 1.17 6.45 -51.93 -0.33 0.83 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.10 2.41 4.73 -52.48 -0.25 2.16 16 40 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.09 1.62 7.94 -52.49 -0.42 1.20 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -27.07 328.29 -9.62 -36.69 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.78 Total: 3.67 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -3.37 Total: -32.11 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: -0.25 Total: -30.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.17 Total: 16.99 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.07 -9.62 -36.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489423302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.065 kcal (2) G-P(sol) polarization free energy of solvation -27.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds