Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00049 * 2 1 4 4 H 1.08997 * 109.45949 * 359.70418 * 3 2 1 5 5 C 1.53035 * 109.46350 * 239.72162 * 3 2 1 6 6 C 1.53121 * 109.27874 * 180.80144 * 5 3 2 7 7 C 1.53116 * 109.15637 * 57.65655 * 6 5 3 8 8 C 1.53038 * 109.27993 * 302.34281 * 7 6 5 9 9 N 1.46843 * 109.46293 * 119.66662 * 3 2 1 10 10 C 1.46903 * 111.00470 * 305.85833 * 9 3 2 11 11 C 1.50698 * 109.47168 * 169.99590 * 10 9 3 12 12 C 1.38635 * 119.75379 * 269.72655 * 11 10 9 13 13 C 1.37613 * 120.24929 * 179.76795 * 12 11 10 14 14 C 1.40712 * 119.74369 * 0.52592 * 13 12 11 15 15 C 1.41404 * 120.24190 * 179.74628 * 14 13 12 16 16 H 1.07998 * 119.99449 * 150.20571 * 15 14 13 17 17 C 1.39944 * 120.00327 * 330.21387 * 15 14 13 18 18 N 1.30812 * 120.00387 * 161.73199 * 17 15 14 19 19 Si 1.86800 * 119.99440 * 341.73004 * 17 15 14 20 20 H 1.48496 * 109.47218 * 95.41550 * 19 17 15 21 21 H 1.48503 * 109.46826 * 215.41243 * 19 17 15 22 22 H 1.48497 * 109.47683 * 335.41039 * 19 17 15 23 23 C 1.40715 * 119.51591 * 359.72884 * 14 13 12 24 24 C 1.37619 * 119.73953 * 359.97438 * 23 14 13 25 25 H 1.08001 * 119.99781 * 180.27545 * 1 2 3 26 26 H 1.07998 * 120.00060 * 0.27416 * 1 2 3 27 27 H 1.08001 * 120.00173 * 179.72003 * 2 1 3 28 28 H 1.08996 * 109.50793 * 300.74802 * 5 3 2 29 29 H 1.09010 * 109.49944 * 60.86285 * 5 3 2 30 30 H 1.08998 * 109.52138 * 177.56061 * 6 5 3 31 31 H 1.09003 * 109.52355 * 297.68705 * 6 5 3 32 32 H 1.09002 * 109.50596 * 62.28965 * 7 6 5 33 33 H 1.09007 * 109.49933 * 182.40480 * 7 6 5 34 34 H 1.09007 * 109.45884 * 179.19648 * 8 7 6 35 35 H 1.09000 * 109.46083 * 299.16358 * 8 7 6 36 36 H 1.09001 * 109.46798 * 290.00098 * 10 9 3 37 37 H 1.09002 * 109.47030 * 49.99832 * 10 9 3 38 38 H 1.08006 * 119.87041 * 359.97438 * 12 11 10 39 39 H 1.08006 * 120.12853 * 180.23618 * 13 12 11 40 40 H 0.96996 * 120.00640 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.13039 * 180.02562 * 23 14 13 42 42 H 1.08000 * 119.87276 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3551 2.1334 -0.0053 5 6 2.9486 1.3829 -1.2461 6 6 3.7271 2.7014 -1.2316 7 6 4.5543 2.7824 0.0543 8 6 3.6228 2.6640 1.2627 9 7 2.9017 1.3862 1.2030 10 6 2.1018 1.1760 2.4172 11 6 3.0193 1.0211 3.6026 12 6 3.4689 -0.2394 3.9645 13 6 4.3108 -0.3921 5.0423 14 6 4.7062 0.7360 5.7846 15 6 5.5667 0.5907 6.8972 16 1 6.2399 1.3908 7.1673 17 6 5.5461 -0.5900 7.6482 18 7 6.5511 -0.8842 8.4322 19 14 4.0833 -1.7458 7.5311 20 1 4.3726 -2.8114 6.5382 21 1 3.8315 -2.3616 8.8588 22 1 2.8829 -0.9835 7.1035 23 6 4.2395 2.0099 5.4113 24 6 3.4031 2.1396 4.3261 25 1 -0.5400 -0.9353 0.0045 26 1 -0.5400 0.9353 -0.0045 27 1 1.8501 -0.9353 0.0046 28 1 3.6482 0.5472 -1.2484 29 1 2.3247 1.3385 -2.1389 30 1 4.3911 2.7418 -2.0951 31 1 3.0286 3.5373 -1.2699 32 1 5.2793 1.9686 0.0725 33 1 5.0778 3.7378 0.0906 34 1 4.2104 2.7070 2.1798 35 1 2.9070 3.4859 1.2513 36 1 1.4471 2.0333 2.5739 37 1 1.4994 0.2747 2.3038 38 1 3.1598 -1.1044 3.3964 39 1 4.6629 -1.3746 5.3203 40 1 6.5367 -1.7023 8.9531 41 1 4.5371 2.8826 5.9737 42 1 3.0440 3.1164 4.0375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489423302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = 14.307085 kcal Electronic energy + Delta-G solvation = -20694.849929 eV Core-core repulsion = 17831.452613 eV Total energy + Delta-G solvation = -2863.397315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61194 -39.29628 -35.84923 -35.03511 -34.45306 -32.06570 -31.51244 -30.54180 -28.47884 -25.75691 -24.19400 -23.52578 -23.20845 -21.59306 -20.65715 -20.57427 -19.33895 -17.51609 -17.11504 -16.51996 -15.95426 -15.68084 -15.58263 -15.46073 -14.82989 -14.73556 -14.56436 -14.37951 -14.14915 -14.06306 -13.62553 -13.22126 -12.99205 -12.83763 -12.58455 -12.43445 -12.25604 -12.04500 -11.99002 -11.72919 -11.55378 -11.43640 -11.27740 -11.12517 -10.97741 -10.23636 -9.46766 -9.38476 -9.07537 -8.89411 -6.48018 0.76962 0.89407 1.25753 1.36822 1.41507 1.48563 2.12711 2.55735 3.15019 3.58091 3.84462 3.97914 4.04277 4.13675 4.22350 4.25559 4.35662 4.42152 4.48820 4.50644 4.58249 4.72058 4.74535 4.83343 4.88960 4.92816 5.02195 5.07065 5.09229 5.11096 5.14448 5.25555 5.33965 5.34637 5.51502 5.63450 5.73504 5.75822 5.82027 5.92373 6.07262 6.25765 6.29080 6.38242 6.43917 6.76359 6.85970 8.19598 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.004764 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.931658 B = 5876.489436 C = 6480.867343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.041 0.959 5 C -0.105 4.105 6 C -0.115 4.115 7 C -0.115 4.115 8 C 0.053 3.947 9 N -0.536 5.536 10 C 0.123 3.877 11 C -0.183 4.183 12 C -0.062 4.062 13 C -0.250 4.250 14 C 0.073 3.927 15 C -0.489 4.489 16 H 0.054 0.946 17 C 0.049 3.951 18 N -0.853 5.853 19 Si 0.966 3.034 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.254 1.254 23 C -0.222 4.222 24 C -0.071 4.071 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.293 0.707 41 H 0.099 0.901 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 3.137 -18.115 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.169 4.169 3 C 0.003 3.997 4 H 0.058 0.942 5 C -0.142 4.142 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.074 4.074 9 N -0.261 5.261 10 C -0.003 4.003 11 C -0.184 4.184 12 C -0.081 4.081 13 C -0.269 4.269 14 C 0.070 3.930 15 C -0.519 4.519 16 H 0.072 0.928 17 C -0.165 4.165 18 N -0.480 5.480 19 Si 0.789 3.211 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.178 1.178 23 C -0.241 4.241 24 C -0.090 4.090 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.543 2.655 -17.949 20.985 hybrid contribution -0.329 0.143 0.858 0.929 sum -10.872 2.798 -17.091 20.448 Atomic orbital electron populations 1.23998 0.95458 1.02642 1.00003 1.22859 0.95915 0.97995 1.00180 1.20840 0.93310 0.94764 0.90751 0.94152 1.21571 0.98358 0.98246 0.96056 1.21563 0.98883 0.97380 0.97446 1.21578 0.97792 1.01867 0.94078 1.22118 0.96670 0.89147 0.99486 1.61955 1.28855 1.33852 1.01396 1.20675 0.92469 1.00408 0.86772 1.19390 1.06244 0.92648 1.00142 1.20704 0.95388 0.97073 0.94901 1.21108 1.07757 0.97431 1.00589 1.17862 0.90233 0.92796 0.92064 1.19481 1.19382 1.01386 1.11656 0.92796 1.26784 0.98528 0.98303 0.92918 1.69722 1.30162 1.25118 1.22991 0.85483 0.79891 0.78348 0.77328 1.18564 1.20379 1.17750 1.21168 1.04663 0.96469 1.01792 1.20772 0.96451 0.97618 0.94117 0.87118 0.88244 0.87392 0.91945 0.90142 0.90506 0.91735 0.92537 0.90742 0.91831 0.94987 0.94930 0.90171 0.86647 0.88915 0.89687 0.88270 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 14.26 67.78 0.97 -2.24 16 2 C -0.15 -3.13 7.15 25.64 0.18 -2.95 16 3 C 0.11 2.46 2.21 44.19 0.10 2.55 16 4 H 0.04 0.88 7.78 -2.39 -0.02 0.86 16 5 C -0.10 -2.00 5.36 30.65 0.16 -1.83 16 6 C -0.12 -2.08 6.00 30.67 0.18 -1.89 16 7 C -0.12 -2.61 6.09 30.65 0.19 -2.42 16 8 C 0.05 1.44 5.15 86.33 0.44 1.89 16 9 N -0.54 -14.90 4.48 -880.05 -3.94 -18.84 16 10 C 0.12 3.74 4.90 85.56 0.42 4.16 16 11 C -0.18 -6.97 4.91 -19.68 -0.10 -7.07 16 12 C -0.06 -2.61 9.67 22.22 0.21 -2.39 16 13 C -0.25 -12.16 7.18 22.73 0.16 -12.00 16 14 C 0.07 3.83 5.10 -21.29 -0.11 3.72 16 15 C -0.49 -28.35 9.57 23.46 0.22 -28.12 16 16 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 17 C 0.05 2.69 5.40 85.26 0.46 3.15 16 18 N -0.85 -48.14 13.93 21.82 0.30 -47.83 16 19 Si 0.97 44.20 24.52 68.60 1.68 45.88 16 20 H -0.26 -11.32 6.71 99.48 0.67 -10.66 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.25 -11.83 6.86 99.48 0.68 -11.15 16 23 C -0.22 -10.40 9.80 22.73 0.22 -10.18 16 24 C -0.07 -2.83 7.83 22.22 0.17 -2.65 16 25 H 0.11 1.65 8.06 -2.91 -0.02 1.63 16 26 H 0.10 1.60 7.83 -2.91 -0.02 1.58 16 27 H 0.11 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.06 2.04 5.74 -2.38 -0.01 2.03 16 35 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.03 0.94 8.06 -2.39 -0.02 0.92 16 37 H 0.08 2.32 6.45 -2.39 -0.02 2.30 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 39 H 0.09 4.56 4.73 -2.91 -0.01 4.55 16 40 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 41 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.12 4.00 7.94 -2.91 -0.02 3.97 16 Total: -1.00 -60.13 328.29 2.86 -57.27 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.91 Total: 21.79 kcal Atomic # 6 Polarization: -62.17 SS G_CDS: 3.90 Total: -58.27 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -3.64 Total: -66.67 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.68 Total: 45.88 kcal Total: -60.13 2.86 -57.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489423302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.577 kcal (2) G-P(sol) polarization free energy of solvation -60.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds