Wall clock time and date at job start Mon Mar 30 2020 00:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00114 * 2 1 4 4 O 1.20829 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00305 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47739 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99645 * 89.99674 * 6 5 3 8 8 H 1.07994 * 120.00073 * 29.30371 * 7 6 5 9 9 C 1.38812 * 119.99868 * 209.57727 * 7 6 5 10 10 N 1.31621 * 120.00229 * 210.26748 * 9 7 6 11 11 Si 1.86804 * 120.00160 * 30.26148 * 9 7 6 12 12 H 1.48504 * 109.46927 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47105 * 119.99990 * 11 9 7 14 14 H 1.48496 * 109.47467 * 240.00447 * 11 9 7 15 15 C 1.46495 * 119.99892 * 270.00402 * 6 5 3 16 16 C 1.53006 * 109.46960 * 264.46271 * 15 6 5 17 17 H 1.09001 * 109.46777 * 304.99751 * 16 15 6 18 18 C 1.52998 * 109.46896 * 65.00370 * 16 15 6 19 19 C 1.53000 * 109.46836 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.46786 * 299.99826 * 19 18 16 21 21 C 1.53002 * 109.47363 * 60.00088 * 20 19 18 22 22 C 1.52993 * 109.47064 * 299.99969 * 21 20 19 23 23 H 1.08999 * 109.47004 * 179.97438 * 22 21 20 24 24 O 1.42895 * 109.47367 * 299.99912 * 22 21 20 25 25 H 1.09010 * 109.47316 * 300.00753 * 1 2 3 26 26 H 1.09008 * 109.46935 * 60.00130 * 1 2 3 27 27 H 1.08994 * 109.47813 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46897 * 59.99080 * 5 3 2 29 29 H 1.09001 * 109.47064 * 299.99663 * 5 3 2 30 30 H 0.97003 * 119.99513 * 5.13559 * 10 9 7 31 31 H 1.08996 * 109.47619 * 24.46790 * 15 6 5 32 32 H 1.09009 * 109.47060 * 144.46388 * 15 6 5 33 33 H 1.08997 * 109.46843 * 299.99774 * 18 16 15 34 34 H 1.08991 * 109.47410 * 59.99865 * 18 16 15 35 35 H 1.08999 * 109.47038 * 179.97438 * 19 18 16 36 36 H 1.08996 * 109.47493 * 59.99107 * 19 18 16 37 37 H 1.08997 * 109.47256 * 299.99787 * 20 19 18 38 38 H 1.09006 * 109.46801 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.46914 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46750 * 60.00285 * 21 20 19 41 41 H 0.96702 * 114.00446 * 300.00251 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1753 3.3370 1.1854 8 1 4.4901 2.7893 2.0614 9 6 3.9615 4.7064 1.2628 10 7 4.6572 5.4343 2.1104 11 14 2.6863 5.5162 0.1638 12 1 2.0453 4.4862 -0.6927 13 1 1.6534 6.1728 1.0047 14 1 3.3462 6.5331 -0.6940 15 6 4.1899 3.3813 -1.2692 16 6 5.6734 3.3340 -1.6407 17 1 6.2666 3.7361 -0.8194 18 6 6.0865 1.8851 -1.9068 19 6 7.5701 1.8377 -2.2777 20 6 7.8082 2.6752 -3.5358 21 6 7.3951 4.1241 -3.2698 22 6 5.9116 4.1715 -2.8989 23 1 5.6173 5.2037 -2.7089 24 8 5.1342 3.6446 -3.9759 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.9563 0.7805 -0.8891 29 1 3.9556 0.7810 0.8909 30 1 5.3703 5.0278 2.6273 31 1 3.6039 2.8990 -2.0515 32 1 3.8740 4.4196 -1.1665 33 1 5.9172 1.2886 -1.0103 34 1 5.4933 1.4831 -2.7280 35 1 7.8646 0.8054 -2.4668 36 1 8.1631 2.2396 -1.4562 37 1 7.2154 2.2733 -4.3574 38 1 8.8652 2.6410 -3.8003 39 1 7.5643 4.7206 -4.1662 40 1 7.9881 4.5260 -2.4482 41 1 5.2359 4.1276 -4.8075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565047978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:27 Heat of formation + Delta-G solvation = -124.299068 kcal Electronic energy + Delta-G solvation = -22710.618449 eV Core-core repulsion = 19398.068706 eV Total energy + Delta-G solvation = -3312.549743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59931 -39.02533 -36.26178 -35.21223 -34.57626 -31.91445 -30.86610 -29.62751 -28.24465 -26.39052 -25.01353 -22.51926 -21.87240 -21.01828 -19.75622 -19.29523 -17.33015 -16.82044 -16.54819 -15.94628 -15.79158 -15.19589 -14.78216 -14.56529 -14.17034 -13.82207 -13.31619 -13.01861 -12.90000 -12.65246 -12.49923 -12.17845 -11.80466 -11.74995 -11.53697 -11.31025 -11.10471 -10.97174 -10.60014 -10.56046 -10.23539 -10.16581 -10.04709 -9.77177 -9.60480 -9.44412 -9.32680 -8.94123 -8.41137 -7.10305 -6.37472 -3.36184 3.14551 3.43315 3.53294 3.69342 3.96800 4.60360 4.66432 4.84050 5.01475 5.11406 5.15722 5.35824 5.46622 5.52813 5.53910 5.63498 5.67415 5.73928 5.81554 5.87639 5.89678 5.96502 6.02495 6.09103 6.16408 6.21556 6.29044 6.40007 6.48580 6.61077 6.69439 6.71069 6.90090 7.10378 7.14020 7.94200 7.97135 8.41263 8.69504 8.97236 9.53738 10.10277 11.02704 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.008125 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.278513 B = 3445.361997 C = 4376.610396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.413 3.587 4 O -0.491 6.491 5 C 0.151 3.849 6 N -0.567 5.567 7 C -0.361 4.361 8 H 0.069 0.931 9 C 0.013 3.987 10 N -0.899 5.899 11 Si 1.034 2.966 12 H -0.258 1.258 13 H -0.304 1.304 14 H -0.300 1.300 15 C 0.165 3.835 16 C -0.093 4.093 17 H 0.089 0.911 18 C -0.103 4.103 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.149 4.149 22 C 0.107 3.893 23 H 0.052 0.948 24 O -0.560 6.560 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.267 0.733 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.755 -7.850 -11.082 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.251 3.749 4 O -0.376 6.376 5 C 0.020 3.980 6 N -0.286 5.286 7 C -0.488 4.488 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.535 5.535 11 Si 0.864 3.136 12 H -0.183 1.183 13 H -0.233 1.233 14 H -0.229 1.229 15 C 0.040 3.960 16 C -0.114 4.114 17 H 0.107 0.893 18 C -0.140 4.140 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.187 4.187 22 C 0.048 3.952 23 H 0.070 0.930 24 O -0.364 6.364 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.625 -6.514 -10.905 12.806 hybrid contribution 0.448 -0.756 0.072 0.881 sum 2.073 -7.269 -10.833 13.210 Atomic orbital electron populations 1.23024 0.79166 1.02119 1.01758 1.86646 1.21678 1.36386 1.85096 1.27239 0.94877 0.80755 0.71988 1.90625 1.66840 1.36243 1.43875 1.21147 0.84317 0.90018 1.02488 1.44295 1.73425 1.07682 1.03162 1.20050 1.46154 0.92618 0.90017 0.91355 1.26119 0.99734 0.93582 0.99756 1.70901 1.19265 1.37198 1.26175 0.84292 0.77532 0.75356 0.76394 1.18291 1.23306 1.22853 1.20951 0.92575 0.96069 0.86447 1.21701 1.00399 0.95099 0.94189 0.89299 1.21452 0.94607 0.96957 1.01026 1.21537 0.97736 0.98948 0.97360 1.21408 0.99787 0.95094 0.98566 1.22221 0.97714 0.97388 1.01393 1.21888 0.88923 0.96765 0.87663 0.93048 1.86561 1.69326 1.59179 1.21349 0.92723 0.92873 0.89434 0.89862 0.89330 0.92289 0.93120 0.94060 0.91473 0.92164 0.92744 0.92342 0.91728 0.93005 0.92459 0.91122 0.78849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 101.05 1.07 1.57 16 2 O -0.38 -6.86 10.57 -39.26 -0.41 -7.28 16 3 C 0.41 8.72 8.03 36.00 0.29 9.01 16 4 O -0.49 -12.20 14.94 -18.75 -0.28 -12.48 16 5 C 0.15 3.02 5.34 -5.20 -0.03 2.99 16 6 N -0.57 -13.26 1.42 -174.61 -0.25 -13.51 16 7 C -0.36 -9.86 9.74 -15.06 -0.15 -10.01 16 8 H 0.07 1.98 8.06 -52.49 -0.42 1.56 16 9 C 0.01 0.37 5.23 -17.43 -0.09 0.28 16 10 N -0.90 -27.33 13.70 55.49 0.76 -26.57 16 11 Si 1.03 27.56 25.38 -169.99 -4.31 23.24 16 12 H -0.26 -6.84 5.39 56.52 0.30 -6.54 16 13 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 14 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 15 C 0.16 3.62 3.60 -4.04 -0.01 3.60 16 16 C -0.09 -1.74 2.19 -90.62 -0.20 -1.94 16 17 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 18 C -0.10 -1.66 4.20 -26.73 -0.11 -1.77 16 19 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 20 C -0.11 -1.37 5.78 -26.73 -0.15 -1.53 16 21 C -0.15 -1.94 5.64 -26.73 -0.15 -2.09 16 22 C 0.11 1.68 3.21 -26.73 -0.09 1.60 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 O -0.56 -8.19 11.39 -35.23 -0.40 -8.59 16 25 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.05 0.77 8.13 -51.92 -0.42 0.35 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.43 6.62 -51.93 -0.34 1.09 16 29 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 30 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 31 H 0.05 1.09 7.72 -51.93 -0.40 0.69 16 32 H 0.04 1.00 3.01 -51.92 -0.16 0.85 16 33 H 0.07 1.13 6.32 -51.93 -0.33 0.80 16 34 H 0.06 0.97 7.68 -51.93 -0.40 0.58 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.37 3.70 9.08 45.56 0.41 4.11 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -32.80 320.79 -5.78 -38.58 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.93 Total: 1.84 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 0.22 Total: -0.06 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.51 Total: -40.08 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.10 Total: -28.35 kcal Atomic # 14 Polarization: 27.56 SS G_CDS: -4.31 Total: 23.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.80 -5.78 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565047978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.723 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds