Wall clock time and date at job start Mon Mar 30 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99838 * 2 1 4 4 O 1.20828 * 119.99927 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99765 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47002 * 179.97438 * 5 3 2 7 7 C 1.36936 * 120.00317 * 270.00167 * 6 5 3 8 8 H 1.08000 * 120.00291 * 144.96573 * 7 6 5 9 9 C 1.38817 * 119.99808 * 324.95952 * 7 6 5 10 10 N 1.31625 * 119.99842 * 157.16378 * 9 7 6 11 11 Si 1.86799 * 120.00180 * 337.16743 * 9 7 6 12 12 H 1.48499 * 109.47017 * 95.36909 * 11 9 7 13 13 H 1.48493 * 109.47045 * 215.36890 * 11 9 7 14 14 H 1.48500 * 109.47212 * 335.36894 * 11 9 7 15 15 C 1.46503 * 119.99866 * 90.00095 * 6 5 3 16 16 C 1.53000 * 109.47164 * 86.00287 * 15 6 5 17 17 H 1.09002 * 109.47266 * 302.87161 * 16 15 6 18 18 C 1.52999 * 109.47125 * 62.86833 * 16 15 6 19 19 C 1.53000 * 109.47125 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47187 * 300.00076 * 19 18 16 21 21 C 1.52999 * 109.47150 * 59.99939 * 20 19 18 22 22 C 1.52998 * 109.47187 * 182.86909 * 16 15 6 23 23 H 1.09002 * 109.47224 * 300.00278 * 22 16 15 24 24 O 1.42895 * 109.46960 * 59.99855 * 22 16 15 25 25 H 1.08990 * 109.47425 * 60.00233 * 1 2 3 26 26 H 1.08998 * 109.46793 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46809 * 299.99857 * 1 2 3 28 28 H 1.08998 * 109.47155 * 59.99985 * 5 3 2 29 29 H 1.08993 * 109.47312 * 299.99734 * 5 3 2 30 30 H 0.96997 * 119.99513 * 180.02562 * 10 9 7 31 31 H 1.08995 * 109.47294 * 206.00498 * 15 6 5 32 32 H 1.09004 * 109.47063 * 326.00213 * 15 6 5 33 33 H 1.08999 * 109.46987 * 300.00240 * 18 16 15 34 34 H 1.08997 * 109.47047 * 59.99660 * 18 16 15 35 35 H 1.08998 * 109.46789 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.47266 * 60.00328 * 19 18 16 37 37 H 1.09002 * 109.47224 * 300.00278 * 20 19 18 38 38 H 1.09002 * 109.47249 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.46939 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46781 * 60.00067 * 21 20 19 41 41 H 0.96705 * 113.99755 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1753 3.3361 -1.1872 8 1 3.9250 4.3833 -1.2721 9 6 4.6936 2.6555 -2.2805 10 7 4.4746 3.1034 -3.4986 11 14 5.7015 1.1041 -2.0229 12 1 4.8225 -0.0853 -2.1574 13 1 6.7804 1.0400 -3.0412 14 1 6.3028 1.1241 -0.6652 15 6 4.1899 3.3825 1.2674 16 6 5.6176 3.1356 1.7589 17 1 5.7877 2.0635 1.8575 18 6 6.6114 3.7192 0.7526 19 6 8.0392 3.4718 1.2437 20 6 8.2348 4.1458 2.6032 21 6 7.2410 3.5622 3.6095 22 6 5.8128 3.8101 3.1182 23 1 5.6427 4.8823 3.0197 24 8 4.8846 3.2651 4.0581 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.9557 0.7809 -0.8908 29 1 3.9564 0.7806 0.8891 30 1 4.8364 2.6276 -4.2626 31 1 4.0360 4.4514 1.1202 32 1 3.4814 3.0122 2.0085 33 1 6.4723 3.2387 -0.2158 34 1 6.4413 4.7913 0.6539 35 1 8.7471 3.8871 0.5266 36 1 8.2090 2.3995 1.3420 37 1 8.0650 5.2180 2.5050 38 1 9.2521 3.9699 2.9529 39 1 7.3801 4.0428 4.5779 40 1 7.4108 2.4900 3.7078 41 1 4.9513 3.6476 4.9437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565047982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:29 Heat of formation + Delta-G solvation = -123.579742 kcal Electronic energy + Delta-G solvation = -22582.923973 eV Core-core repulsion = 19270.405422 eV Total energy + Delta-G solvation = -3312.518551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.58952 -38.93592 -36.28105 -35.36281 -34.92301 -32.02077 -30.81913 -29.31094 -28.26786 -26.26575 -25.62269 -22.45662 -21.96650 -20.85957 -19.95790 -19.28877 -17.21344 -16.96514 -16.81445 -16.03176 -15.49895 -15.07732 -14.97668 -14.45877 -14.18484 -13.66781 -13.29490 -13.12877 -13.00980 -12.68419 -12.52372 -12.31981 -12.07957 -11.76227 -11.51605 -11.40684 -11.19085 -10.88731 -10.62608 -10.53310 -10.27543 -10.22059 -10.11668 -9.82925 -9.77523 -9.66139 -9.60248 -9.30755 -8.59331 -7.03224 -6.07032 -3.45956 3.12728 3.22278 3.39733 3.42668 3.47040 4.40964 4.44982 4.81030 4.94147 5.00816 5.19636 5.32683 5.46921 5.50194 5.54751 5.56743 5.65065 5.70603 5.80383 5.85016 5.90907 5.94353 5.99633 6.05207 6.16056 6.20434 6.28312 6.35605 6.43601 6.62982 6.68030 6.82121 7.04461 7.13815 7.17176 7.86043 7.90349 8.32046 8.64143 8.88745 9.59802 9.96718 11.08048 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.008002 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.582570 B = 3498.348954 C = 4635.752340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.426 3.574 4 O -0.493 6.493 5 C 0.141 3.859 6 N -0.572 5.572 7 C -0.259 4.259 8 H 0.083 0.917 9 C 0.035 3.965 10 N -0.890 5.890 11 Si 0.855 3.145 12 H -0.282 1.282 13 H -0.296 1.296 14 H -0.255 1.255 15 C 0.161 3.839 16 C -0.095 4.095 17 H 0.066 0.934 18 C -0.109 4.109 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.148 4.148 22 C 0.109 3.891 23 H 0.052 0.948 24 O -0.565 6.565 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.265 0.735 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -2.366 12.791 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.296 6.296 3 C 0.265 3.735 4 O -0.378 6.378 5 C 0.012 3.988 6 N -0.291 5.291 7 C -0.388 4.388 8 H 0.101 0.899 9 C -0.166 4.166 10 N -0.530 5.530 11 Si 0.685 3.315 12 H -0.211 1.211 13 H -0.224 1.224 14 H -0.180 1.180 15 C 0.035 3.965 16 C -0.116 4.116 17 H 0.084 0.916 18 C -0.146 4.146 19 C -0.162 4.162 20 C -0.152 4.152 21 C -0.186 4.186 22 C 0.050 3.950 23 H 0.070 0.930 24 O -0.369 6.369 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.133 -2.364 12.063 12.685 hybrid contribution 0.471 -0.539 0.388 0.814 sum 3.604 -2.903 12.450 13.283 Atomic orbital electron populations 1.23050 0.78795 1.02296 1.01857 1.86622 1.21925 1.35977 1.85040 1.26562 0.94243 0.80790 0.71877 1.90564 1.66727 1.36383 1.44092 1.21275 0.85222 0.89676 1.02670 1.43915 1.73813 1.07870 1.03472 1.18787 1.36888 0.96653 0.86452 0.89900 1.25428 0.98336 0.97664 0.95166 1.69887 1.44350 1.41110 0.97641 0.87294 0.81496 0.84048 0.78694 1.21071 1.22408 1.17960 1.20912 0.92394 0.96863 0.86285 1.21735 0.98847 0.99847 0.91165 0.91596 1.21586 0.91502 1.01243 1.00311 1.21637 0.98468 1.00241 0.95869 1.21474 0.98060 1.00082 0.95593 1.22250 0.96253 1.01738 0.98323 1.21938 0.86761 0.96672 0.89639 0.92960 1.86584 1.60057 1.67345 1.22952 0.92520 0.89290 0.92768 0.89244 0.89781 0.92529 0.92496 0.93259 0.88572 0.92296 0.92261 0.92529 0.92070 0.92538 0.92548 0.91527 0.78644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 101.05 1.07 1.60 16 2 O -0.38 -7.45 10.57 -39.25 -0.41 -7.86 16 3 C 0.43 9.66 8.03 36.01 0.29 9.95 16 4 O -0.49 -12.49 16.18 -18.75 -0.30 -12.80 16 5 C 0.14 3.14 5.12 -5.19 -0.03 3.12 16 6 N -0.57 -13.44 1.38 -174.61 -0.24 -13.68 16 7 C -0.26 -7.02 8.29 -15.06 -0.12 -7.15 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 9 C 0.03 0.97 5.25 -17.43 -0.09 0.88 16 10 N -0.89 -26.58 13.97 55.49 0.78 -25.81 16 11 Si 0.86 20.65 23.51 -169.99 -4.00 16.66 16 12 H -0.28 -6.74 6.66 56.52 0.38 -6.37 16 13 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.26 -5.74 6.65 56.52 0.38 -5.37 16 15 C 0.16 3.28 5.06 -4.04 -0.02 3.26 16 16 C -0.10 -1.67 2.15 -90.62 -0.19 -1.87 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 18 C -0.11 -1.95 4.75 -26.73 -0.13 -2.08 16 19 C -0.12 -1.84 5.92 -26.73 -0.16 -2.00 16 20 C -0.11 -1.40 5.92 -26.73 -0.16 -1.55 16 21 C -0.15 -1.79 5.55 -26.70 -0.15 -1.93 16 22 C 0.11 1.55 2.90 -26.70 -0.08 1.47 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 O -0.56 -7.87 12.59 -35.23 -0.44 -8.31 16 25 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.09 2.11 2.96 -51.93 -0.15 1.96 16 29 H 0.08 1.62 8.07 -51.93 -0.42 1.20 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.06 1.19 8.01 -51.93 -0.42 0.77 16 32 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 33 H 0.10 2.05 4.39 -51.93 -0.23 1.82 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.37 3.36 9.08 45.56 0.41 3.77 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -32.04 322.24 -5.42 -37.46 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.88 Total: 5.79 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 0.23 Total: 3.70 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.53 Total: -39.49 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.16 Total: -28.97 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.00 Total: 16.66 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.04 -5.42 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565047982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.120 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds