Wall clock time and date at job start Mon Mar 30 2020 00:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 116.99497 * 2 1 4 4 O 1.20823 * 120.00712 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99619 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47131 * 180.02562 * 5 3 2 7 7 C 1.36930 * 120.00070 * 270.00144 * 6 5 3 8 8 H 1.08007 * 120.00213 * 188.18814 * 7 6 5 9 9 C 1.38816 * 120.00192 * 8.18228 * 7 6 5 10 10 N 1.31620 * 119.99611 * 23.77368 * 9 7 6 11 11 Si 1.86799 * 120.00122 * 203.76717 * 9 7 6 12 12 H 1.48499 * 109.46771 * 90.00541 * 11 9 7 13 13 H 1.48502 * 109.46969 * 210.00356 * 11 9 7 14 14 H 1.48495 * 109.47318 * 329.99853 * 11 9 7 15 15 C 1.46505 * 119.99691 * 89.99977 * 6 5 3 16 16 C 1.53000 * 109.46983 * 95.39757 * 15 6 5 17 17 H 1.08999 * 109.47531 * 54.99231 * 16 15 6 18 18 C 1.53000 * 109.46714 * 294.99721 * 16 15 6 19 19 C 1.53004 * 109.47016 * 180.02562 * 18 16 15 20 20 C 1.52992 * 109.47416 * 59.99536 * 19 18 16 21 21 C 1.53000 * 109.47407 * 300.00224 * 20 19 18 22 22 C 1.53004 * 109.46889 * 174.99905 * 16 15 6 23 23 H 1.08997 * 109.46632 * 299.99134 * 22 16 15 24 24 O 1.42897 * 109.47188 * 59.99807 * 22 16 15 25 25 H 1.09003 * 109.47016 * 60.00049 * 1 2 3 26 26 H 1.09002 * 109.46763 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46728 * 299.99931 * 1 2 3 28 28 H 1.09000 * 109.46783 * 59.99993 * 5 3 2 29 29 H 1.09003 * 109.47112 * 300.00132 * 5 3 2 30 30 H 0.97002 * 119.99930 * 179.97438 * 10 9 7 31 31 H 1.08990 * 109.47158 * 335.38910 * 15 6 5 32 32 H 1.09002 * 109.46859 * 215.38807 * 15 6 5 33 33 H 1.08994 * 109.47862 * 59.99916 * 18 16 15 34 34 H 1.09002 * 109.47211 * 299.99894 * 18 16 15 35 35 H 1.08999 * 109.46898 * 299.99307 * 19 18 16 36 36 H 1.08998 * 109.47126 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47119 * 60.00506 * 20 19 18 38 38 H 1.09007 * 109.47379 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.47268 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.46721 * 300.00115 * 21 20 19 41 41 H 0.96703 * 113.99721 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1762 3.3367 -1.1845 8 1 4.6078 4.3267 -1.1889 9 6 3.8188 2.7301 -2.3809 10 7 2.9030 1.7848 -2.3915 11 14 4.6374 3.2556 -3.9756 12 1 5.8492 2.4288 -4.2058 13 1 3.6894 3.0691 -5.1034 14 1 5.0240 4.6865 -3.8855 15 6 4.1889 3.3819 1.2701 16 6 5.6715 3.3318 1.6445 17 1 6.2672 3.7320 0.8241 18 6 6.0811 1.8822 1.9123 19 6 7.5637 1.8322 2.2873 20 6 7.8001 2.6698 3.5456 21 6 7.3904 4.1194 3.2778 22 6 5.9083 4.1696 2.9027 23 1 5.6166 5.2023 2.7118 24 8 5.1275 3.6449 3.9783 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9564 0.7806 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 2.6530 1.3611 -3.2276 31 1 3.6003 2.9013 2.0515 32 1 3.8754 4.4207 1.1660 33 1 5.9124 1.2853 1.0161 34 1 5.4855 1.4820 2.7328 35 1 8.1596 2.2324 1.4671 36 1 7.8556 0.7994 2.4777 37 1 7.2042 2.2694 4.3658 38 1 8.8562 2.6337 3.8130 39 1 7.5585 4.7160 4.1743 40 1 7.9864 4.5196 2.4575 41 1 5.2286 4.1280 4.8099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565047983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:31 Heat of formation + Delta-G solvation = -145.928693 kcal Electronic energy + Delta-G solvation = -22607.403113 eV Core-core repulsion = 19293.915439 eV Total energy + Delta-G solvation = -3313.487674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86292 -40.19024 -37.72160 -36.50125 -35.73956 -33.80238 -31.67656 -30.75368 -29.70693 -27.69259 -26.96425 -24.07481 -23.25881 -22.02875 -21.43199 -20.47963 -18.75200 -18.14509 -17.64270 -17.28390 -16.96062 -16.56419 -16.26812 -15.73051 -15.49479 -15.12324 -14.89641 -14.36460 -14.11714 -13.94030 -13.70006 -13.34186 -13.09311 -12.99584 -12.86967 -12.68976 -12.60402 -12.36636 -12.20994 -12.03155 -11.89352 -11.67821 -11.49235 -11.39226 -11.29329 -11.02916 -10.75886 -10.53463 -10.39672 -8.97373 -7.93949 -5.21354 1.48209 1.49782 1.57854 2.00336 2.33096 2.56301 3.24915 3.51363 3.57575 3.95579 4.00229 4.07660 4.31872 4.37922 4.45118 4.48101 4.52433 4.56890 4.65918 4.68271 4.72685 4.78726 4.82235 4.92995 5.06350 5.08458 5.19451 5.22699 5.30032 5.41747 5.46408 5.47289 5.61190 5.65386 5.73717 5.94340 6.21508 7.04030 7.09199 7.49290 7.81456 8.19736 9.15340 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.007165 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.253736 B = 3906.753856 C = 5014.658367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.467 3.533 4 O -0.551 6.551 5 C 0.193 3.807 6 N -0.579 5.579 7 C -0.250 4.250 8 H 0.080 0.920 9 C -0.054 4.054 10 N -0.932 5.932 11 Si 0.970 3.030 12 H -0.280 1.280 13 H -0.304 1.304 14 H -0.273 1.273 15 C 0.163 3.837 16 C -0.087 4.087 17 H 0.069 0.931 18 C -0.099 4.099 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.143 4.143 22 C 0.114 3.886 23 H 0.050 0.950 24 O -0.574 6.574 25 H 0.033 0.967 26 H 0.127 0.873 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 -0.508 12.060 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.303 6.303 3 C 0.309 3.691 4 O -0.440 6.440 5 C 0.064 3.936 6 N -0.298 5.298 7 C -0.379 4.379 8 H 0.098 0.902 9 C -0.247 4.247 10 N -0.580 5.580 11 Si 0.799 3.201 12 H -0.207 1.207 13 H -0.232 1.232 14 H -0.198 1.198 15 C 0.038 3.962 16 C -0.108 4.108 17 H 0.087 0.913 18 C -0.137 4.137 19 C -0.154 4.154 20 C -0.145 4.145 21 C -0.181 4.181 22 C 0.055 3.945 23 H 0.068 0.932 24 O -0.381 6.381 25 H 0.052 0.948 26 H 0.145 0.855 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.615 -0.670 11.475 13.788 hybrid contribution -0.465 0.828 -1.001 1.380 sum 7.149 0.159 10.474 12.682 Atomic orbital electron populations 1.23160 0.77680 1.04174 1.00599 1.86513 1.23164 1.35468 1.85168 1.25955 0.94246 0.80135 0.68736 1.90417 1.67707 1.37927 1.47963 1.20538 0.84572 0.86899 1.01636 1.44248 1.75435 1.07784 1.02352 1.19551 1.33262 1.00972 0.84123 0.90243 1.25432 0.98471 1.00164 1.00682 1.69980 1.30587 1.31328 1.26132 0.85205 0.77753 0.78020 0.79085 1.20688 1.23194 1.19832 1.20804 0.94774 0.94727 0.85921 1.21583 0.97131 0.96704 0.95374 0.91271 1.21366 0.96551 0.95699 1.00084 1.21524 0.95404 1.00283 0.98155 1.21396 1.01099 0.94573 0.97468 1.22176 0.95505 0.97917 1.02476 1.21703 0.90628 0.95427 0.86728 0.93203 1.86544 1.69224 1.59957 1.22413 0.94771 0.85456 0.93065 0.88610 0.90312 0.94135 0.94374 0.95665 0.93424 0.92770 0.92593 0.91647 0.91773 0.90948 0.89824 0.91216 0.76444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 10.56 113.37 1.20 2.59 16 2 O -0.39 -17.61 10.57 -51.40 -0.54 -18.15 16 3 C 0.47 24.30 6.03 71.24 0.43 24.73 16 4 O -0.55 -32.47 15.95 21.97 0.35 -32.12 16 5 C 0.19 9.43 4.62 85.64 0.40 9.83 16 6 N -0.58 -28.87 1.75 -706.33 -1.24 -30.11 16 7 C -0.25 -13.58 9.71 84.04 0.82 -12.77 16 8 H 0.08 4.23 7.94 -2.91 -0.02 4.21 16 9 C -0.05 -2.97 4.94 84.86 0.42 -2.55 16 10 N -0.93 -54.49 8.92 21.65 0.19 -54.30 16 11 Si 0.97 45.21 29.62 68.60 2.03 47.24 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 C 0.16 6.98 4.89 86.38 0.42 7.40 16 16 C -0.09 -2.95 2.20 -10.79 -0.02 -2.98 16 17 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 18 C -0.10 -3.16 4.19 30.60 0.13 -3.04 16 19 C -0.12 -2.90 5.92 30.59 0.18 -2.72 16 20 C -0.11 -2.19 5.78 30.59 0.18 -2.02 16 21 C -0.14 -2.85 5.63 30.58 0.17 -2.68 16 22 C 0.11 2.98 3.21 30.58 0.10 3.07 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 O -0.57 -14.59 11.39 -148.98 -1.70 -16.28 16 25 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 26 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 27 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 28 H 0.10 5.06 6.23 -2.39 -0.01 5.04 16 29 H 0.08 3.35 6.60 -2.39 -0.02 3.33 16 30 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.04 1.68 7.72 -2.39 -0.02 1.66 16 32 H 0.02 1.13 8.08 -2.39 -0.02 1.11 16 33 H 0.05 1.72 6.31 -2.39 -0.02 1.71 16 34 H 0.05 1.77 7.68 -2.39 -0.02 1.76 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.34 7.68 -2.39 -0.02 1.32 16 38 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.39 6.05 9.08 -74.06 -0.67 5.37 16 Total: -1.00 -70.04 324.24 3.85 -66.19 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.34 Total: 18.66 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 4.41 Total: 18.88 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -1.05 Total: -84.41 kcal Atomic # 8 Polarization: -64.66 SS G_CDS: -1.89 Total: -66.55 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.04 3.85 -66.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565047983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.739 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds