Wall clock time and date at job start Mon Mar 30 2020 00:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48497 * 109.46824 * 273.69427 * 3 2 1 5 5 H 1.48495 * 109.46998 * 33.69495 * 3 2 1 6 6 H 1.48500 * 109.46825 * 153.69613 * 3 2 1 7 7 C 1.37881 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00431 * 354.11046 * 7 2 1 9 9 C 1.50704 * 119.99322 * 174.38644 * 7 2 1 10 10 C 1.53000 * 115.55004 * 294.42881 * 9 7 2 11 11 N 1.46893 * 109.47268 * 295.02653 * 10 9 7 12 12 C 1.46906 * 110.99943 * 183.22015 * 11 10 9 13 13 C 1.53005 * 109.47229 * 185.25948 * 12 11 10 14 14 C 1.54345 * 110.82222 * 287.97297 * 13 12 11 15 15 C 1.51359 * 105.17090 * 215.42602 * 14 13 12 16 16 C 1.38501 * 130.39322 * 197.19004 * 15 14 13 17 17 C 1.38103 * 120.21532 * 179.97438 * 16 15 14 18 18 C 1.38250 * 119.93578 * 0.02562 * 17 16 15 19 19 C 1.38105 * 119.93509 * 0.02562 * 18 17 16 20 20 C 1.38218 * 109.75980 * 17.18928 * 15 14 13 21 21 C 1.51371 * 109.75887 * 0.02562 * 20 15 14 22 22 C 1.53002 * 117.49428 * 148.76379 * 9 7 2 23 23 C 1.52994 * 117.49778 * 80.10822 * 9 7 2 24 24 H 0.96999 * 120.00088 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46773 * 55.03180 * 10 9 7 26 26 H 1.08998 * 109.46809 * 175.02439 * 10 9 7 27 27 H 1.00901 * 111.00321 * 307.17219 * 11 10 9 28 28 H 1.08994 * 109.47206 * 305.26473 * 12 11 10 29 29 H 1.09006 * 109.46896 * 65.25978 * 12 11 10 30 30 H 1.09001 * 110.72873 * 51.59923 * 13 12 11 31 31 H 1.08999 * 110.30283 * 334.35474 * 14 13 12 32 32 H 1.09003 * 110.30153 * 96.50172 * 14 13 12 33 33 H 1.07998 * 119.89010 * 0.02562 * 16 15 14 34 34 H 1.08001 * 120.02954 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.03100 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.88820 * 180.02562 * 19 18 17 37 37 H 1.09000 * 110.30146 * 223.88640 * 21 20 15 38 38 H 1.09002 * 110.38744 * 101.77437 * 21 20 15 39 39 H 1.08995 * 117.50100 * 0.02562 * 22 9 7 40 40 H 1.09003 * 117.49677 * 145.01419 * 22 9 7 41 41 H 1.09006 * 117.49806 * 214.97238 * 23 9 7 42 42 H 1.09000 * 117.50041 * 359.96799 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4185 2.0915 -1.3972 5 1 1.4878 2.6288 0.7767 6 1 3.5836 1.4188 0.6204 7 6 2.0045 -1.1941 0.0005 8 1 1.4688 -2.1269 0.0969 9 6 3.5061 -1.1972 -0.1271 10 6 4.0559 -0.6904 -1.4620 11 7 3.6440 -1.6009 -2.5386 12 6 4.2181 -1.1875 -3.8261 13 6 3.6643 -2.0774 -4.9407 14 6 4.2645 -3.4970 -4.8587 15 6 4.4166 -3.9464 -6.2960 16 6 4.5981 -5.2132 -6.8258 17 6 4.7130 -5.3855 -8.1912 18 6 4.6472 -4.2905 -9.0328 19 6 4.4673 -3.0265 -8.5063 20 6 4.3508 -2.8518 -7.1373 21 6 4.1507 -1.5917 -6.3229 22 6 4.2720 -2.3230 0.5707 23 6 4.3227 -0.8998 1.1320 24 1 -0.4850 0.8400 -0.0004 25 1 3.6650 0.3076 -1.6605 26 1 5.1442 -0.6517 -1.4154 27 1 3.8930 -2.5542 -2.3211 28 1 3.9538 -0.1490 -4.0251 29 1 5.3031 -1.2853 -3.7883 30 1 2.5755 -2.1110 -4.9026 31 1 5.2366 -3.4687 -4.3663 32 1 3.5879 -4.1633 -4.3236 33 1 4.6492 -6.0690 -6.1691 34 1 4.8549 -6.3745 -8.6012 35 1 4.7373 -4.4235 -10.1007 36 1 4.4156 -2.1718 -9.1643 37 1 3.3960 -0.9570 -6.7873 38 1 5.0913 -1.0497 -6.2245 39 1 3.6898 -3.0615 1.1217 40 1 5.1678 -2.7023 0.0790 41 1 5.2520 -0.3434 1.0094 42 1 3.7739 -0.7014 2.0526 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578606679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:39 Heat of formation + Delta-G solvation = 43.492408 kcal Electronic energy + Delta-G solvation = -20148.140587 eV Core-core repulsion = 17286.008842 eV Total energy + Delta-G solvation = -2862.131745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.18656 -37.55189 -36.34736 -33.73303 -31.98168 -31.47095 -29.61159 -27.31511 -26.43628 -25.11419 -23.18186 -21.81830 -21.40278 -20.91738 -20.05791 -18.85782 -16.62768 -16.27257 -15.95829 -15.21503 -15.07281 -14.72582 -14.05954 -13.93642 -13.81012 -13.25255 -13.17294 -12.89989 -12.80988 -12.59974 -12.51304 -12.03992 -11.74078 -11.25713 -11.16711 -10.87919 -10.82375 -10.78428 -10.57950 -10.54857 -10.41729 -10.06171 -9.37267 -8.99561 -8.88096 -8.56968 -8.53666 -8.34372 -7.65318 -5.97979 -3.95472 1.29535 1.31670 3.33735 3.43862 3.49615 3.68746 4.29719 4.52166 4.58119 4.64388 4.90851 4.95022 5.01858 5.05930 5.22525 5.32958 5.36271 5.46010 5.56645 5.63993 5.68677 5.80037 5.81828 5.87659 5.89296 6.00387 6.04114 6.12751 6.18295 6.21204 6.30165 6.37816 6.41759 6.47141 6.50757 6.59754 6.64702 6.77658 6.94084 7.12111 7.15962 7.75980 7.86869 8.08666 8.63285 9.05046 9.66303 11.14751 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.003889 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.809110 B = 7197.724615 C = 7539.932952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.080 3.920 3 Si 0.868 3.132 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.462 4.462 8 H 0.074 0.926 9 C 0.005 3.995 10 C 0.098 3.902 11 N -0.663 5.663 12 C 0.067 3.933 13 C -0.082 4.082 14 C -0.081 4.081 15 C -0.090 4.090 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.093 4.093 21 C -0.079 4.079 22 C -0.187 4.187 23 C -0.195 4.195 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.004 0.996 27 H 0.337 0.663 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 -6.246 -14.794 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.122 4.122 3 Si 0.697 3.303 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.499 4.499 8 H 0.092 0.908 9 C 0.004 3.996 10 C -0.031 4.031 11 N -0.293 5.293 12 C -0.062 4.062 13 C -0.101 4.101 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.128 4.128 17 C -0.142 4.142 18 C -0.144 4.144 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.117 4.117 22 C -0.224 4.224 23 C -0.233 4.233 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.022 0.978 27 H 0.155 0.845 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.736 -5.797 -14.887 19.248 hybrid contribution 1.353 0.664 0.011 1.507 sum 12.089 -5.133 -14.877 19.844 Atomic orbital electron populations 1.69904 1.06318 1.26721 1.50936 1.24849 0.94410 0.98739 0.94191 0.87012 0.81421 0.83975 0.77919 1.20833 1.22220 1.17604 1.20135 0.86513 0.94331 1.48946 0.90751 1.19437 0.94804 0.97583 0.87781 1.21672 0.93763 0.96298 0.91400 1.60157 1.62620 1.05841 1.00695 1.21954 0.95137 0.99087 0.90051 1.21901 1.01789 0.93558 0.92865 1.21179 1.01360 0.96976 0.92248 1.20725 0.98666 0.93189 0.96396 1.20666 1.00778 0.96235 0.95104 1.21006 1.01175 0.98706 0.93343 1.20993 1.01286 0.92588 0.99513 1.20627 1.01017 0.97290 0.93907 1.20670 0.99227 0.96139 0.93312 1.21119 1.01674 0.94675 0.94186 1.22769 1.01497 0.91967 1.06208 1.23057 1.01400 0.98058 1.00811 0.92855 0.91934 0.97830 0.84513 0.91204 0.96146 0.88648 0.90502 0.90097 0.86307 0.86149 0.86183 0.86446 0.90582 0.90291 0.89758 0.91516 0.91615 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 21.56 24.98 -169.99 -4.25 17.32 16 4 H -0.28 -6.93 7.04 56.52 0.40 -6.53 16 5 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.25 -5.87 5.71 56.52 0.32 -5.55 16 7 C -0.46 -12.81 9.29 -34.44 -0.32 -13.13 16 8 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.01 0.12 0.92 -155.66 -0.14 -0.03 16 10 C 0.10 2.03 5.15 -3.83 -0.02 2.01 16 11 N -0.66 -12.44 6.40 -113.78 -0.73 -13.17 16 12 C 0.07 1.03 5.02 -3.82 -0.02 1.01 16 13 C -0.08 -1.11 3.30 -89.20 -0.29 -1.41 16 14 C -0.08 -1.01 5.83 -26.85 -0.16 -1.17 16 15 C -0.09 -1.12 6.14 -104.21 -0.64 -1.76 16 16 C -0.11 -1.23 10.04 -39.53 -0.40 -1.63 16 17 C -0.12 -1.25 10.05 -39.63 -0.40 -1.65 16 18 C -0.13 -1.25 10.05 -39.63 -0.40 -1.65 16 19 C -0.11 -1.20 10.04 -39.54 -0.40 -1.60 16 20 C -0.09 -1.14 6.14 -104.21 -0.64 -1.78 16 21 C -0.08 -0.93 6.32 -26.84 -0.17 -1.10 16 22 C -0.19 -3.73 9.96 -26.70 -0.27 -3.99 16 23 C -0.19 -4.11 8.01 -26.70 -0.21 -4.32 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.06 1.41 5.08 -51.93 -0.26 1.15 16 26 H 0.00 0.07 8.09 -51.93 -0.42 -0.35 16 27 H 0.34 5.92 8.27 -39.29 -0.33 5.59 16 28 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.02 0.29 7.93 -51.93 -0.41 -0.12 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 39 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -30.41 335.65 -10.66 -41.07 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.95 Total: 6.65 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -4.57 Total: -30.02 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.05 Total: -40.06 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.25 Total: 17.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.41 -10.66 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578606679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.558 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds