Wall clock time and date at job start Mon Mar 30 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48506 * 109.46971 * 240.00184 * 3 2 1 5 5 H 1.48489 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47018 * 120.00566 * 3 2 1 7 7 C 1.37882 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00347 * 173.59665 * 7 2 1 9 9 C 1.50709 * 119.99702 * 353.59412 * 7 2 1 10 10 C 1.52996 * 115.54927 * 85.44737 * 9 7 2 11 11 N 1.46903 * 109.47373 * 65.04760 * 10 9 7 12 12 C 1.46895 * 111.00272 * 185.35124 * 11 10 9 13 13 C 1.50700 * 109.47398 * 179.97438 * 12 11 10 14 14 C 1.38144 * 119.89501 * 259.72913 * 13 12 11 15 15 C 1.38211 * 119.93673 * 179.76931 * 14 13 12 16 16 C 1.38156 * 119.92954 * 0.49823 * 15 14 13 17 17 C 1.38445 * 120.21432 * 359.75211 * 16 15 14 18 18 C 1.38260 * 119.85354 * 0.02562 * 17 16 15 19 19 C 1.51374 * 109.74998 * 179.97438 * 18 17 16 20 20 C 1.54349 * 105.17263 * 342.80998 * 19 18 17 21 21 C 1.51372 * 130.39254 * 179.97438 * 17 16 15 22 22 C 1.53002 * 117.49565 * 231.11510 * 9 7 2 23 23 C 1.52997 * 117.49708 * 299.77518 * 9 7 2 24 24 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47428 * 305.04774 * 10 9 7 26 26 H 1.08998 * 109.47095 * 185.04729 * 10 9 7 27 27 H 1.00905 * 110.99962 * 61.39548 * 11 10 9 28 28 H 1.09005 * 109.47026 * 59.99664 * 12 11 10 29 29 H 1.08994 * 109.47126 * 299.99953 * 12 11 10 30 30 H 1.08001 * 120.03332 * 0.02562 * 14 13 12 31 31 H 1.07997 * 120.03644 * 180.22514 * 15 14 13 32 32 H 1.08005 * 119.88699 * 179.72373 * 16 15 14 33 33 H 1.08996 * 110.29987 * 101.73741 * 19 18 17 34 34 H 1.08994 * 110.29975 * 223.88833 * 19 18 17 35 35 H 1.08992 * 110.82478 * 268.12946 * 20 19 18 36 36 H 1.09008 * 110.98621 * 144.65559 * 20 19 18 37 37 H 1.08996 * 110.30816 * 316.14455 * 21 17 16 38 38 H 1.09006 * 110.29850 * 78.19727 * 21 17 16 39 39 H 1.09006 * 117.49548 * 215.00505 * 22 9 7 40 40 H 1.08994 * 117.49995 * 0.02562 * 22 9 7 41 41 H 1.08997 * 117.50135 * 359.97438 * 23 9 7 42 42 H 1.08997 * 117.49334 * 144.97970 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7463 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1971 -0.1048 9 6 1.2580 -2.4952 0.1445 10 6 0.7035 -3.0861 -1.1533 11 7 1.8167 -3.4574 -2.0371 12 6 1.3225 -3.9109 -3.3440 13 6 2.4902 -4.2817 -4.2215 14 6 2.9379 -3.3960 -5.1825 15 6 4.0117 -3.7332 -5.9846 16 6 4.6288 -4.9596 -5.8306 17 6 4.1783 -5.8507 -4.8716 18 6 3.1069 -5.5115 -4.0661 19 6 2.8092 -6.6441 -3.1070 20 6 3.5243 -7.8758 -3.7020 21 6 4.6731 -7.2345 -4.5088 22 6 1.7456 -3.4740 1.2147 23 6 0.4400 -2.7018 1.4209 24 1 -0.4849 0.8401 0.0004 25 1 0.0761 -2.3463 -1.6504 26 1 0.1100 -3.9713 -0.9250 27 1 2.4006 -4.1594 -1.6078 28 1 0.7541 -3.1093 -3.8157 29 1 0.6797 -4.7805 -3.2075 30 1 2.4518 -2.4392 -5.3041 31 1 4.3653 -3.0405 -6.7339 32 1 5.4651 -5.2242 -6.4608 33 1 3.2072 -6.4167 -2.1181 34 1 1.7351 -6.8205 -3.0519 35 1 2.8553 -8.4333 -4.3573 36 1 3.9161 -8.5184 -2.9135 37 1 4.8713 -7.8138 -5.4105 38 1 5.5736 -7.1661 -3.8983 39 1 1.6714 -4.5389 0.9940 40 1 2.6061 -3.1767 1.8140 41 1 0.4422 -1.8970 2.1559 42 1 -0.4932 -3.2585 1.3359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593622744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:15 Heat of formation + Delta-G solvation = 38.735630 kcal Electronic energy + Delta-G solvation = -20459.258763 eV Core-core repulsion = 17596.920749 eV Total energy + Delta-G solvation = -2862.338014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09141 -37.02331 -35.73090 -34.48451 -31.80546 -31.15812 -28.87586 -27.59489 -26.13968 -25.13313 -23.11825 -21.77716 -20.99042 -20.84416 -19.98216 -18.89784 -16.22778 -16.01513 -15.81126 -15.10697 -14.84381 -14.49605 -14.26912 -13.90694 -13.52127 -13.23773 -13.03294 -12.84086 -12.48342 -12.37756 -11.80434 -11.58646 -11.51134 -11.25805 -11.18042 -10.89612 -10.89366 -10.86192 -10.62786 -10.52085 -10.38871 -10.12181 -9.41343 -8.76552 -8.48184 -8.34246 -8.31720 -7.99723 -7.47248 -5.90635 -3.91597 1.53765 1.55444 3.39803 3.43245 3.47318 3.88014 4.44052 4.52284 4.58136 4.92778 4.97408 5.10828 5.16015 5.21227 5.34981 5.39495 5.51086 5.56495 5.62187 5.67052 5.71820 5.81499 5.87513 5.92171 6.00805 6.12404 6.20521 6.27576 6.34612 6.38047 6.53322 6.63701 6.67399 6.72065 6.77497 6.90654 6.92477 7.15896 7.19527 7.51480 7.62588 7.98930 8.02674 8.20815 8.61406 9.07127 9.71151 11.19347 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.004893 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.056628 B = 5720.823713 C = 6539.806945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.468 4.468 8 H 0.058 0.942 9 C 0.053 3.947 10 C 0.107 3.893 11 N -0.661 5.661 12 C 0.096 3.904 13 C -0.054 4.054 14 C -0.100 4.100 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.091 4.091 19 C -0.084 4.084 20 C -0.119 4.119 21 C -0.079 4.079 22 C -0.216 4.216 23 C -0.158 4.158 24 H 0.257 0.743 25 H 0.076 0.924 26 H -0.007 1.007 27 H 0.329 0.671 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -13.301 -9.854 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.021 4.021 11 N -0.290 5.290 12 C -0.033 4.033 13 C -0.054 4.054 14 C -0.119 4.119 15 C -0.140 4.140 16 C -0.134 4.134 17 C -0.104 4.104 18 C -0.092 4.092 19 C -0.121 4.121 20 C -0.157 4.157 21 C -0.116 4.116 22 C -0.254 4.254 23 C -0.196 4.196 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.147 0.853 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.408 -12.515 -10.059 16.943 hybrid contribution 0.056 0.205 0.235 0.317 sum 5.464 -12.310 -9.824 16.671 Atomic orbital electron populations 1.70002 1.05783 1.26190 1.50508 1.24926 0.94747 0.98663 0.95083 0.86736 0.79647 0.83460 0.78571 1.20267 1.21555 1.20485 1.20266 0.92789 0.88388 1.49163 0.92366 1.18814 0.97086 0.93703 0.85169 1.21568 0.90585 0.95817 0.94132 1.60328 1.21761 1.44693 1.02260 1.20874 0.93000 0.98239 0.91172 1.19466 0.97354 0.92434 0.96187 1.20987 0.96755 0.98892 0.95242 1.20989 0.96639 0.96365 0.99990 1.20510 1.00332 0.93973 0.98552 1.20495 0.96853 0.96344 0.96677 1.20379 0.96534 0.94861 0.97420 1.21039 1.00930 0.92066 0.98022 1.22270 0.97070 0.96957 0.99357 1.21008 0.98547 0.92210 0.99876 1.22990 0.98540 0.95388 1.08438 1.22513 0.91908 1.01150 1.04036 0.93323 0.90518 0.98850 0.85348 0.90597 0.95633 0.85694 0.86170 0.86821 0.90073 0.91011 0.91231 0.90701 0.91169 0.90431 0.92271 0.90552 0.90074 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 12.92 55.43 0.72 -24.67 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.47 -12.93 8.74 -34.43 -0.30 -13.23 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.05 1.31 1.55 -155.66 -0.24 1.07 16 10 C 0.11 2.42 5.51 -3.82 -0.02 2.40 16 11 N -0.66 -13.24 6.37 -115.06 -0.73 -13.97 16 12 C 0.10 1.64 5.58 -4.98 -0.03 1.61 16 13 C -0.05 -0.85 5.40 -104.58 -0.56 -1.41 16 14 C -0.10 -1.50 9.66 -39.63 -0.38 -1.89 16 15 C -0.12 -1.60 10.05 -39.62 -0.40 -2.00 16 16 C -0.12 -1.45 10.04 -39.54 -0.40 -1.85 16 17 C -0.10 -1.35 6.14 -104.21 -0.64 -1.99 16 18 C -0.09 -1.30 6.00 -104.21 -0.63 -1.93 16 19 C -0.08 -1.01 6.36 -26.85 -0.17 -1.18 16 20 C -0.12 -1.14 7.08 -25.33 -0.18 -1.32 16 21 C -0.08 -0.81 6.77 -26.86 -0.18 -0.99 16 22 C -0.22 -4.75 9.96 -26.69 -0.27 -5.02 16 23 C -0.16 -3.75 9.41 -26.69 -0.25 -4.00 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.08 1.92 8.13 -51.93 -0.42 1.50 16 26 H -0.01 -0.14 8.09 -51.93 -0.42 -0.56 16 27 H 0.33 6.31 8.77 -39.29 -0.34 5.96 16 28 H 0.08 1.32 7.99 -51.93 -0.42 0.91 16 29 H 0.03 0.41 7.70 -51.93 -0.40 0.01 16 30 H 0.13 1.81 8.03 -52.49 -0.42 1.39 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.11 1.16 8.06 -52.48 -0.42 0.73 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.85 7.80 -51.93 -0.41 0.44 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -29.21 345.81 -11.59 -40.81 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.02 Total: 5.90 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -4.74 Total: -29.96 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.02 Total: -38.65 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.21 -11.59 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593622744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.543 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds