Wall clock time and date at job start Mon Mar 30 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48506 * 109.46971 * 240.00184 * 3 2 1 5 5 H 1.48489 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47018 * 120.00566 * 3 2 1 7 7 C 1.37882 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00347 * 173.59665 * 7 2 1 9 9 C 1.50709 * 119.99702 * 353.59412 * 7 2 1 10 10 C 1.52996 * 115.54927 * 85.44737 * 9 7 2 11 11 N 1.46903 * 109.47373 * 65.04760 * 10 9 7 12 12 C 1.46895 * 111.00272 * 185.35124 * 11 10 9 13 13 C 1.50700 * 109.47398 * 179.97438 * 12 11 10 14 14 C 1.38144 * 119.89501 * 259.72913 * 13 12 11 15 15 C 1.38211 * 119.93673 * 179.76931 * 14 13 12 16 16 C 1.38156 * 119.92954 * 0.49823 * 15 14 13 17 17 C 1.38445 * 120.21432 * 359.75211 * 16 15 14 18 18 C 1.38260 * 119.85354 * 0.02562 * 17 16 15 19 19 C 1.51374 * 109.74998 * 179.97438 * 18 17 16 20 20 C 1.54349 * 105.17263 * 342.80998 * 19 18 17 21 21 C 1.51372 * 130.39254 * 179.97438 * 17 16 15 22 22 C 1.53002 * 117.49565 * 231.11510 * 9 7 2 23 23 C 1.52997 * 117.49708 * 299.77518 * 9 7 2 24 24 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47428 * 305.04774 * 10 9 7 26 26 H 1.08998 * 109.47095 * 185.04729 * 10 9 7 27 27 H 1.00905 * 110.99962 * 61.39548 * 11 10 9 28 28 H 1.09005 * 109.47026 * 59.99664 * 12 11 10 29 29 H 1.08994 * 109.47126 * 299.99953 * 12 11 10 30 30 H 1.08001 * 120.03332 * 0.02562 * 14 13 12 31 31 H 1.07997 * 120.03644 * 180.22514 * 15 14 13 32 32 H 1.08005 * 119.88699 * 179.72373 * 16 15 14 33 33 H 1.08996 * 110.29987 * 101.73741 * 19 18 17 34 34 H 1.08994 * 110.29975 * 223.88833 * 19 18 17 35 35 H 1.08992 * 110.82478 * 268.12946 * 20 19 18 36 36 H 1.09008 * 110.98621 * 144.65559 * 20 19 18 37 37 H 1.08996 * 110.30816 * 316.14455 * 21 17 16 38 38 H 1.09006 * 110.29850 * 78.19727 * 21 17 16 39 39 H 1.09006 * 117.49548 * 215.00505 * 22 9 7 40 40 H 1.08994 * 117.49995 * 0.02562 * 22 9 7 41 41 H 1.08997 * 117.50135 * 359.97438 * 23 9 7 42 42 H 1.08997 * 117.49334 * 144.97970 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7463 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1971 -0.1048 9 6 1.2580 -2.4952 0.1445 10 6 0.7035 -3.0861 -1.1533 11 7 1.8167 -3.4574 -2.0371 12 6 1.3225 -3.9109 -3.3440 13 6 2.4902 -4.2817 -4.2215 14 6 2.9379 -3.3960 -5.1825 15 6 4.0117 -3.7332 -5.9846 16 6 4.6288 -4.9596 -5.8306 17 6 4.1783 -5.8507 -4.8716 18 6 3.1069 -5.5115 -4.0661 19 6 2.8092 -6.6441 -3.1070 20 6 3.5243 -7.8758 -3.7020 21 6 4.6731 -7.2345 -4.5088 22 6 1.7456 -3.4740 1.2147 23 6 0.4400 -2.7018 1.4209 24 1 -0.4849 0.8401 0.0004 25 1 0.0761 -2.3463 -1.6504 26 1 0.1100 -3.9713 -0.9250 27 1 2.4006 -4.1594 -1.6078 28 1 0.7541 -3.1093 -3.8157 29 1 0.6797 -4.7805 -3.2075 30 1 2.4518 -2.4392 -5.3041 31 1 4.3653 -3.0405 -6.7339 32 1 5.4651 -5.2242 -6.4608 33 1 3.2072 -6.4167 -2.1181 34 1 1.7351 -6.8205 -3.0519 35 1 2.8553 -8.4333 -4.3573 36 1 3.9161 -8.5184 -2.9135 37 1 4.8713 -7.8138 -5.4105 38 1 5.5736 -7.1661 -3.8983 39 1 1.6714 -4.5389 0.9940 40 1 2.6061 -3.1767 1.8140 41 1 0.4422 -1.8970 2.1559 42 1 -0.4932 -3.2585 1.3359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593622744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:15 Heat of formation + Delta-G solvation = 24.347040 kcal Electronic energy + Delta-G solvation = -20459.882699 eV Core-core repulsion = 17596.920749 eV Total energy + Delta-G solvation = -2862.961950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09716 -38.80907 -36.79446 -35.88242 -33.90565 -32.40551 -29.82350 -28.63621 -27.78529 -26.93088 -24.63911 -22.93288 -22.64930 -21.86021 -21.13997 -20.71678 -18.07728 -17.06628 -16.94680 -16.60628 -16.29802 -15.96461 -15.56163 -15.46055 -15.11546 -14.81260 -14.15250 -13.93520 -13.68758 -13.45263 -13.33715 -13.14657 -12.95081 -12.85154 -12.61188 -12.46909 -12.36193 -12.05691 -12.02327 -11.91805 -11.74852 -11.58376 -11.27993 -10.74724 -10.37264 -9.95023 -9.55513 -9.34824 -9.04164 -8.03538 -6.09457 0.46911 0.50848 1.42855 1.43672 1.50729 2.47776 2.79797 3.26225 3.40454 3.54603 3.68423 3.75655 3.98798 4.12796 4.19159 4.25021 4.32651 4.42559 4.46479 4.52827 4.66207 4.68434 4.72029 4.77422 4.84242 4.86752 4.95020 4.96324 4.98584 5.06757 5.11340 5.27552 5.28028 5.32787 5.36819 5.61526 5.64118 5.69248 5.74678 5.79830 5.87634 6.16330 6.33217 6.49965 6.71153 6.93208 7.55457 9.05397 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.004893 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.056628 B = 5720.823713 C = 6539.806945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.480 4.480 8 H 0.044 0.956 9 C 0.024 3.976 10 C 0.124 3.876 11 N -0.671 5.671 12 C 0.104 3.896 13 C -0.077 4.077 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.117 4.117 17 C -0.110 4.110 18 C -0.106 4.106 19 C -0.087 4.087 20 C -0.112 4.112 21 C -0.077 4.077 22 C -0.188 4.188 23 C -0.163 4.163 24 H 0.256 0.744 25 H 0.042 0.958 26 H 0.008 0.992 27 H 0.335 0.665 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.105 -15.156 -10.512 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.006 4.006 11 N -0.301 5.301 12 C -0.025 4.025 13 C -0.077 4.077 14 C -0.142 4.142 15 C -0.143 4.143 16 C -0.135 4.135 17 C -0.110 4.110 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.149 4.149 21 C -0.114 4.114 22 C -0.225 4.225 23 C -0.202 4.202 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.038 -14.380 -10.718 19.266 hybrid contribution -0.410 0.754 0.402 0.948 sum 6.627 -13.626 -10.316 18.330 Atomic orbital electron populations 1.70102 1.06822 1.26653 1.51485 1.25559 0.95494 1.01484 0.95073 0.85857 0.78551 0.80134 0.78493 1.20301 1.21135 1.19915 1.20482 0.92357 0.90147 1.48849 0.93752 1.18926 0.98285 0.93967 0.86528 1.21206 0.90846 0.95259 0.93242 1.60212 1.21296 1.45655 1.02973 1.20779 0.93894 0.97954 0.89861 1.19437 0.97710 0.93752 0.96820 1.21107 0.97972 0.98851 0.96255 1.21270 0.95849 0.97254 0.99920 1.20895 1.00675 0.93419 0.98494 1.20968 0.96236 0.97769 0.96054 1.20672 0.96934 0.94751 0.98288 1.21115 1.01194 0.92552 0.97512 1.22290 0.96764 0.96031 0.99861 1.21087 0.98814 0.90579 1.00935 1.22973 0.97191 0.96439 1.05899 1.22429 0.93418 1.01255 1.03066 0.93503 0.93983 0.97394 0.84660 0.92064 0.94599 0.86480 0.83999 0.84006 0.90519 0.91222 0.90394 0.88825 0.89191 0.89597 0.89243 0.90673 0.92415 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.25 12.92 21.45 0.28 -52.97 16 2 C 0.02 1.29 5.39 84.66 0.46 1.74 16 3 Si 0.94 45.12 29.54 68.60 2.03 47.15 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.48 -26.91 8.74 25.60 0.22 -26.69 16 8 H 0.04 2.54 7.82 -2.91 -0.02 2.52 16 9 C 0.02 1.17 1.55 -52.93 -0.08 1.09 16 10 C 0.12 5.62 5.51 86.30 0.48 6.09 16 11 N -0.67 -27.13 6.37 -517.95 -3.30 -30.43 16 12 C 0.10 3.60 5.58 85.56 0.48 4.08 16 13 C -0.08 -2.43 5.40 -19.84 -0.11 -2.53 16 14 C -0.12 -3.74 9.66 22.24 0.21 -3.52 16 15 C -0.13 -3.13 10.05 22.24 0.22 -2.91 16 16 C -0.12 -2.66 10.04 22.30 0.22 -2.44 16 17 C -0.11 -2.62 6.14 -19.60 -0.12 -2.74 16 18 C -0.11 -2.90 6.00 -19.59 -0.12 -3.02 16 19 C -0.09 -1.94 6.36 30.52 0.19 -1.75 16 20 C -0.11 -1.81 7.08 31.50 0.22 -1.58 16 21 C -0.08 -1.31 6.77 30.51 0.21 -1.10 16 22 C -0.19 -7.99 9.96 30.62 0.30 -7.69 16 23 C -0.16 -7.75 9.41 30.62 0.29 -7.46 16 24 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.04 2.18 8.13 -2.39 -0.02 2.16 16 26 H 0.01 0.34 8.09 -2.39 -0.02 0.32 16 27 H 0.34 12.71 8.77 -89.69 -0.79 11.93 16 28 H 0.06 2.25 7.99 -2.38 -0.02 2.23 16 29 H 0.04 1.16 7.70 -2.39 -0.02 1.14 16 30 H 0.12 3.57 8.03 -2.91 -0.02 3.55 16 31 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.56 7.80 -2.39 -0.02 1.54 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 40 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.07 3.19 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -62.96 345.81 2.29 -60.67 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.20 Total: 26.00 kcal Atomic # 6 Polarization: -53.51 SS G_CDS: 3.08 Total: -50.42 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -3.02 Total: -83.40 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -62.96 2.29 -60.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593622744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.016 kcal (2) G-P(sol) polarization free energy of solvation -62.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds