Wall clock time and date at job start Mon Mar 30 2020 02:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00358 * 2 1 4 4 N 1.46894 * 109.47438 * 124.96222 * 3 2 1 5 5 C 1.46897 * 111.00381 * 199.67164 * 4 3 2 6 6 C 1.50706 * 109.46749 * 66.04687 * 5 4 3 7 7 H 1.07988 * 120.00322 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99662 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00050 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99761 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47400 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47238 * 120.00250 * 10 8 6 13 13 H 1.48501 * 109.47067 * 239.99973 * 10 8 6 14 14 C 1.46898 * 110.99959 * 75.71644 * 4 3 2 15 15 C 1.50707 * 109.47327 * 199.48500 * 14 4 3 16 16 C 1.38148 * 119.89078 * 254.84175 * 15 14 4 17 17 C 1.38215 * 119.92993 * 179.97438 * 16 15 14 18 18 C 1.38137 * 119.93705 * 0.02562 * 17 16 15 19 19 C 1.38262 * 120.28397 * 0.02562 * 18 17 16 20 20 C 1.38452 * 119.89084 * 74.81935 * 15 14 4 21 21 C 1.51367 * 130.39981 * 0.06445 * 20 15 14 22 22 C 1.54344 * 105.17199 * 162.76590 * 21 20 15 23 23 C 1.51367 * 130.56170 * 179.97438 * 19 18 17 24 24 H 1.08001 * 119.99801 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99531 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99531 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46717 * 4.96425 * 3 2 1 28 28 H 1.08996 * 109.46942 * 244.96559 * 3 2 1 29 29 H 1.09002 * 109.47588 * 186.04061 * 5 4 3 30 30 H 1.08997 * 109.47049 * 306.05070 * 5 4 3 31 31 H 0.96999 * 120.00032 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47216 * 79.48346 * 14 4 3 33 33 H 1.08997 * 109.47118 * 319.48271 * 14 4 3 34 34 H 1.07994 * 120.03261 * 359.95578 * 16 15 14 35 35 H 1.07996 * 120.02634 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.89405 * 179.97438 * 18 17 16 37 37 H 1.09001 * 110.29979 * 43.84799 * 21 20 15 38 38 H 1.08994 * 110.38815 * 281.73914 * 21 20 15 39 39 H 1.08995 * 110.82367 * 268.13211 * 22 21 20 40 40 H 1.09001 * 110.98856 * 144.65764 * 22 21 20 41 41 H 1.08999 * 110.30624 * 78.22564 * 23 19 18 42 42 H 1.09000 * 110.30181 * 316.17489 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9957 1.3323 1.1350 5 6 3.3973 2.7089 1.4535 6 6 2.2016 3.4781 1.9531 7 1 1.2395 2.9931 2.0262 8 6 2.3357 4.8016 2.3159 9 7 3.5072 5.3925 2.2263 10 14 0.8534 5.7553 2.9344 11 1 -0.3382 4.8692 2.9402 12 1 1.1169 6.2402 4.3130 13 1 0.6030 6.9149 2.0412 14 6 4.1694 0.4888 0.8726 15 6 4.8470 0.1513 2.1757 16 6 6.0300 0.7768 2.5189 17 6 6.6518 0.4682 3.7141 18 6 6.0894 -0.4654 4.5628 19 6 4.9061 -1.0941 4.2220 20 6 4.2815 -0.7844 3.0253 21 6 3.0132 -1.5982 2.8836 22 6 3.1542 -2.7471 3.9046 23 6 4.0965 -2.1367 4.9629 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0889 28 1 2.6218 1.4022 -0.9311 29 1 4.1675 2.6936 2.2247 30 1 3.7899 3.1894 0.5574 31 1 3.6016 6.3235 2.4819 32 1 4.8663 1.0260 0.2292 33 1 3.8535 -0.4300 0.3787 34 1 6.4686 1.5059 1.8538 35 1 7.5764 0.9565 3.9841 36 1 6.5760 -0.7063 5.4964 37 1 2.9316 -1.9984 1.8729 38 1 2.1418 -0.9875 3.1193 39 1 3.6087 -3.6231 3.4419 40 1 2.1891 -2.9997 4.3438 41 1 3.5169 -1.6699 5.7593 42 1 4.7531 -2.9037 5.3736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593630325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:11 Heat of formation + Delta-G solvation = 39.257777 kcal Electronic energy + Delta-G solvation = -20962.063758 eV Core-core repulsion = 18099.748386 eV Total energy + Delta-G solvation = -2862.315372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83525 -37.05151 -35.29930 -33.19766 -32.61149 -31.05530 -28.63084 -27.52899 -27.03797 -25.60816 -23.77713 -21.82809 -20.84055 -20.48473 -19.57217 -19.02292 -16.38650 -15.88248 -15.53635 -15.16005 -14.86000 -14.56691 -14.27621 -14.00599 -13.64972 -13.02134 -12.82996 -12.56421 -12.33088 -12.10809 -12.03028 -11.69578 -11.42938 -11.38479 -11.13851 -10.95384 -10.80621 -10.67154 -10.61707 -10.60653 -10.24408 -10.19791 -9.84596 -9.17483 -8.88789 -8.41941 -8.15333 -8.02135 -7.21135 -6.00341 -4.00698 1.81647 1.84692 2.75974 3.31689 3.39290 3.44035 4.15255 4.45603 4.71024 4.87067 5.12309 5.17127 5.35290 5.36962 5.38807 5.42903 5.53327 5.62520 5.67203 5.74276 5.87361 5.94445 5.97153 6.03328 6.06856 6.08560 6.18971 6.23843 6.29312 6.43752 6.55836 6.57891 6.62721 6.91085 6.97101 7.05327 7.15991 7.28276 7.34619 7.36657 7.47817 7.83595 8.12950 8.23408 8.57053 9.07136 9.62990 11.10617 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.006579 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.441726 B = 4254.887327 C = 5090.762665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C 0.081 3.919 4 N -0.523 5.523 5 C 0.193 3.807 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.090 3.910 15 C -0.048 4.048 16 C -0.107 4.107 17 C -0.124 4.124 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.067 4.067 21 C -0.073 4.073 22 C -0.122 4.122 23 C -0.077 4.077 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.036 0.964 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -14.634 0.429 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.147 4.147 3 C -0.046 4.046 4 N -0.247 5.247 5 C 0.068 3.932 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.038 4.038 15 C -0.049 4.049 16 C -0.125 4.125 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.110 4.110 20 C -0.068 4.068 21 C -0.110 4.110 22 C -0.159 4.159 23 C -0.114 4.114 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.006 0.994 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.647 -14.635 0.859 14.752 hybrid contribution -0.180 1.168 -0.223 1.202 sum 1.467 -13.467 0.636 13.562 Atomic orbital electron populations 1.23684 0.95967 1.01141 1.03245 1.22979 0.95808 0.98417 0.97483 1.21205 0.96127 0.95557 0.91731 1.62126 1.12397 1.13976 1.36176 1.19774 0.96889 0.81238 0.95311 1.21194 0.95590 0.94870 1.42615 0.91871 1.24967 0.95899 0.97706 0.95968 1.69966 1.22844 1.12076 1.48867 0.86501 0.83023 0.79815 0.78466 1.19667 1.21062 1.21153 1.21007 0.92698 0.97421 0.92666 1.19345 0.94014 0.94984 0.96508 1.20966 0.95545 0.98890 0.97148 1.20887 1.00211 0.98308 0.94760 1.20393 0.95613 0.97896 0.99452 1.20506 0.95441 0.98875 0.96199 1.20287 0.95632 0.96635 0.94197 1.20937 0.96067 0.95031 0.98942 1.22297 0.99318 0.97789 0.96506 1.20964 0.96739 0.95964 0.97767 0.89350 0.88667 0.88503 0.88970 0.95423 0.94573 0.99390 0.93068 0.94995 0.91475 0.86279 0.86442 0.87099 0.91524 0.89418 0.91588 0.90984 0.90611 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 14.32 29.01 0.42 -2.57 16 2 C -0.13 -2.05 9.33 -36.03 -0.34 -2.38 16 3 C 0.08 1.56 5.24 -4.98 -0.03 1.54 16 4 N -0.52 -11.10 4.34 -238.97 -1.04 -12.14 16 5 C 0.19 5.01 4.55 -4.97 -0.02 4.98 16 6 C -0.50 -14.18 8.23 -34.43 -0.28 -14.46 16 7 H 0.06 1.77 7.31 -52.49 -0.38 1.39 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.09 1.65 4.69 -4.97 -0.02 1.63 16 15 C -0.05 -0.88 4.81 -104.57 -0.50 -1.38 16 16 C -0.11 -1.91 8.99 -39.62 -0.36 -2.26 16 17 C -0.12 -1.98 10.05 -39.63 -0.40 -2.38 16 18 C -0.12 -1.77 10.03 -39.61 -0.40 -2.17 16 19 C -0.11 -1.73 6.15 -104.19 -0.64 -2.37 16 20 C -0.07 -1.14 6.02 -104.12 -0.63 -1.77 16 21 C -0.07 -1.07 6.42 -26.85 -0.17 -1.24 16 22 C -0.12 -1.43 7.08 -25.35 -0.18 -1.60 16 23 C -0.08 -0.97 6.76 -26.88 -0.18 -1.15 16 24 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 25 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 26 H 0.10 1.40 7.28 -52.49 -0.38 1.02 16 27 H 0.09 1.97 6.23 -51.93 -0.32 1.65 16 28 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 29 H 0.04 1.02 6.87 -51.93 -0.36 0.66 16 30 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.59 7.80 -51.93 -0.41 0.19 16 33 H 0.07 1.09 6.63 -51.93 -0.34 0.75 16 34 H 0.12 2.07 7.99 -52.49 -0.42 1.65 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -30.25 341.83 -10.79 -41.04 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.79 Total: 1.29 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -3.83 Total: -26.10 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.30 Total: -38.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.25 -10.79 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.299 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds