Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00358 * 2 1 4 4 N 1.46894 * 109.47438 * 124.96222 * 3 2 1 5 5 C 1.46897 * 111.00381 * 199.67164 * 4 3 2 6 6 C 1.50706 * 109.46749 * 66.04687 * 5 4 3 7 7 H 1.07988 * 120.00322 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99662 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00050 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99761 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47400 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47238 * 120.00250 * 10 8 6 13 13 H 1.48501 * 109.47067 * 239.99973 * 10 8 6 14 14 C 1.46898 * 110.99959 * 75.71644 * 4 3 2 15 15 C 1.50707 * 109.47327 * 199.48500 * 14 4 3 16 16 C 1.38148 * 119.89078 * 254.84175 * 15 14 4 17 17 C 1.38215 * 119.92993 * 179.97438 * 16 15 14 18 18 C 1.38137 * 119.93705 * 0.02562 * 17 16 15 19 19 C 1.38262 * 120.28397 * 0.02562 * 18 17 16 20 20 C 1.38452 * 119.89084 * 74.81935 * 15 14 4 21 21 C 1.51367 * 130.39981 * 0.06445 * 20 15 14 22 22 C 1.54344 * 105.17199 * 162.76590 * 21 20 15 23 23 C 1.51367 * 130.56170 * 179.97438 * 19 18 17 24 24 H 1.08001 * 119.99801 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99531 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99531 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46717 * 4.96425 * 3 2 1 28 28 H 1.08996 * 109.46942 * 244.96559 * 3 2 1 29 29 H 1.09002 * 109.47588 * 186.04061 * 5 4 3 30 30 H 1.08997 * 109.47049 * 306.05070 * 5 4 3 31 31 H 0.96999 * 120.00032 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47216 * 79.48346 * 14 4 3 33 33 H 1.08997 * 109.47118 * 319.48271 * 14 4 3 34 34 H 1.07994 * 120.03261 * 359.95578 * 16 15 14 35 35 H 1.07996 * 120.02634 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.89405 * 179.97438 * 18 17 16 37 37 H 1.09001 * 110.29979 * 43.84799 * 21 20 15 38 38 H 1.08994 * 110.38815 * 281.73914 * 21 20 15 39 39 H 1.08995 * 110.82367 * 268.13211 * 22 21 20 40 40 H 1.09001 * 110.98856 * 144.65764 * 22 21 20 41 41 H 1.08999 * 110.30624 * 78.22564 * 23 19 18 42 42 H 1.09000 * 110.30181 * 316.17489 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9957 1.3323 1.1350 5 6 3.3973 2.7089 1.4535 6 6 2.2016 3.4781 1.9531 7 1 1.2395 2.9931 2.0262 8 6 2.3357 4.8016 2.3159 9 7 3.5072 5.3925 2.2263 10 14 0.8534 5.7553 2.9344 11 1 -0.3382 4.8692 2.9402 12 1 1.1169 6.2402 4.3130 13 1 0.6030 6.9149 2.0412 14 6 4.1694 0.4888 0.8726 15 6 4.8470 0.1513 2.1757 16 6 6.0300 0.7768 2.5189 17 6 6.6518 0.4682 3.7141 18 6 6.0894 -0.4654 4.5628 19 6 4.9061 -1.0941 4.2220 20 6 4.2815 -0.7844 3.0253 21 6 3.0132 -1.5982 2.8836 22 6 3.1542 -2.7471 3.9046 23 6 4.0965 -2.1367 4.9629 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0889 28 1 2.6218 1.4022 -0.9311 29 1 4.1675 2.6936 2.2247 30 1 3.7899 3.1894 0.5574 31 1 3.6016 6.3235 2.4819 32 1 4.8663 1.0260 0.2292 33 1 3.8535 -0.4300 0.3787 34 1 6.4686 1.5059 1.8538 35 1 7.5764 0.9565 3.9841 36 1 6.5760 -0.7063 5.4964 37 1 2.9316 -1.9984 1.8729 38 1 2.1418 -0.9875 3.1193 39 1 3.6087 -3.6231 3.4419 40 1 2.1891 -2.9997 4.3438 41 1 3.5169 -1.6699 5.7593 42 1 4.7531 -2.9037 5.3736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593630325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = 23.706322 kcal Electronic energy + Delta-G solvation = -20962.738120 eV Core-core repulsion = 18099.748386 eV Total energy + Delta-G solvation = -2862.989734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07025 -38.64901 -36.46003 -34.97261 -34.27099 -32.53222 -29.82869 -29.29053 -28.38237 -26.99693 -25.64950 -23.16464 -22.32829 -21.78311 -20.81704 -20.38897 -18.53724 -17.23800 -16.75523 -16.56674 -16.49863 -15.98446 -15.75173 -15.41649 -15.24039 -14.49994 -14.08397 -14.04561 -13.76704 -13.58164 -13.39882 -13.30609 -13.02799 -12.80255 -12.58516 -12.50841 -12.45138 -12.05555 -11.99083 -11.87727 -11.71160 -11.62362 -11.40336 -11.21759 -10.62798 -10.21164 -9.46812 -9.26930 -8.97383 -8.20903 -6.29967 0.51918 0.56699 1.37341 1.38253 1.50597 1.52106 2.38527 2.85399 3.11815 3.53038 3.62064 3.78124 4.06973 4.13629 4.15206 4.26364 4.31102 4.35193 4.42662 4.49352 4.52169 4.70311 4.74417 4.81338 4.92016 4.94938 5.01115 5.03608 5.07912 5.16912 5.22648 5.30193 5.34399 5.38958 5.47721 5.63558 5.65103 5.71238 5.78795 5.86772 6.04261 6.06917 6.22380 6.37557 6.62740 6.86526 7.39009 8.90420 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.006579 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.441726 B = 4254.887327 C = 5090.762665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.082 3.918 4 N -0.523 5.523 5 C 0.213 3.787 6 C -0.517 4.517 7 H 0.061 0.939 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.095 3.905 15 C -0.073 4.073 16 C -0.134 4.134 17 C -0.131 4.131 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.086 4.086 21 C -0.072 4.072 22 C -0.112 4.112 23 C -0.076 4.076 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.007 0.993 30 H -0.045 1.045 31 H 0.263 0.737 32 H 0.020 0.980 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -16.887 1.654 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.159 4.159 3 C -0.046 4.046 4 N -0.246 5.246 5 C 0.087 3.913 6 C -0.556 4.556 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.203 1.203 14 C -0.032 4.032 15 C -0.074 4.074 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.087 4.087 21 C -0.109 4.109 22 C -0.149 4.149 23 C -0.113 4.113 24 H 0.139 0.861 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.025 0.975 30 H -0.027 1.027 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.165 -16.910 2.072 17.037 hybrid contribution 0.312 1.855 -0.623 1.981 sum 0.477 -15.055 1.449 15.132 Atomic orbital electron populations 1.23901 0.95511 1.02253 1.00613 1.22814 0.96161 0.97147 0.99785 1.21185 0.95433 0.96950 0.90993 1.62063 1.13707 1.11269 1.37599 1.19336 0.95384 0.83764 0.92834 1.21465 0.95940 0.95522 1.42652 0.92119 1.25877 0.98918 0.98762 0.96025 1.70097 1.25081 1.12542 1.49743 0.85404 0.79410 0.78375 0.77894 1.18678 1.20572 1.20269 1.21020 0.91451 0.97478 0.93296 1.19459 0.94601 0.96303 0.97003 1.21076 0.96393 0.99501 0.98277 1.21180 1.00928 0.98610 0.94137 1.20781 0.95633 0.97061 1.00210 1.21037 0.95477 0.99190 0.96014 1.20670 0.96821 0.96606 0.94580 1.20965 0.93891 0.95502 1.00557 1.22308 1.00301 0.96970 0.95323 1.21059 0.96857 0.95640 0.97732 0.86053 0.89652 0.86413 0.91722 0.95361 0.97529 1.02709 0.92816 0.96217 0.89008 0.87539 0.84502 0.84132 0.90660 0.91474 0.89869 0.89091 0.90334 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.05 14.32 67.78 0.97 -4.08 16 2 C -0.14 -4.31 9.33 25.64 0.24 -4.07 16 3 C 0.08 3.22 5.24 85.56 0.45 3.67 16 4 N -0.52 -23.06 4.34 -909.96 -3.95 -27.00 16 5 C 0.21 11.72 4.55 85.56 0.39 12.11 16 6 C -0.52 -30.10 8.23 25.60 0.21 -29.89 16 7 H 0.06 3.49 7.31 -2.92 -0.02 3.46 16 8 C 0.00 0.12 5.46 84.66 0.46 0.58 16 9 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 10 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.10 3.62 4.69 85.56 0.40 4.02 16 15 C -0.07 -2.76 4.81 -19.83 -0.10 -2.86 16 16 C -0.13 -5.03 8.99 22.24 0.20 -4.83 16 17 C -0.13 -4.22 10.05 22.24 0.22 -4.00 16 18 C -0.12 -3.48 10.03 22.25 0.22 -3.26 16 19 C -0.12 -3.50 6.15 -19.58 -0.12 -3.62 16 20 C -0.09 -2.89 6.02 -19.54 -0.12 -3.01 16 21 C -0.07 -1.98 6.42 30.52 0.20 -1.79 16 22 C -0.11 -2.23 7.08 31.49 0.22 -2.01 16 23 C -0.08 -1.67 6.76 30.50 0.21 -1.46 16 24 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 25 H 0.09 2.50 7.84 -2.91 -0.02 2.48 16 26 H 0.12 3.12 7.28 -2.91 -0.02 3.10 16 27 H 0.06 2.87 6.23 -2.38 -0.01 2.86 16 28 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 29 H 0.01 0.40 6.87 -2.39 -0.02 0.38 16 30 H -0.04 -2.69 8.12 -2.39 -0.02 -2.71 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.02 0.78 7.80 -2.39 -0.02 0.76 16 33 H 0.09 2.97 6.63 -2.39 -0.02 2.95 16 34 H 0.11 4.08 7.99 -2.91 -0.02 4.06 16 35 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.07 1.89 7.97 -2.39 -0.02 1.87 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -67.69 341.83 3.40 -64.30 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.97 Total: 17.08 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 4.06 Total: -44.48 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -3.66 Total: -84.31 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.69 3.40 -64.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.005 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds