Wall clock time and date at job start Mon Mar 30 2020 01:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00072 * 2 1 4 4 H 1.48496 * 109.46995 * 240.00235 * 3 2 1 5 5 H 1.48493 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46711 * 120.00543 * 3 2 1 7 7 C 1.37882 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 173.38252 * 7 2 1 9 9 C 1.50704 * 119.99778 * 353.38654 * 7 2 1 10 10 C 1.52996 * 115.55052 * 85.36089 * 9 7 2 11 11 N 1.46498 * 109.47386 * 65.12360 * 10 9 7 12 12 C 1.39679 * 120.00257 * 180.72346 * 11 10 9 13 13 C 1.38930 * 120.07008 * 359.97438 * 12 11 10 14 14 C 1.38086 * 119.91844 * 180.02562 * 13 12 11 15 15 C 1.38305 * 120.07608 * 0.02562 * 14 13 12 16 16 C 1.38256 * 120.15219 * 359.97315 * 15 14 13 17 17 C 1.50704 * 119.96434 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.69048 * 320.93639 * 17 16 15 19 19 C 1.53779 * 87.08165 * 139.99005 * 18 17 16 20 20 C 1.53781 * 87.08193 * 334.56821 * 19 18 17 21 21 C 1.38128 * 120.07333 * 0.29820 * 16 15 14 22 22 C 1.52994 * 117.49452 * 231.03116 * 9 7 2 23 23 C 1.52999 * 117.49611 * 299.69239 * 9 7 2 24 24 H 0.97001 * 119.99881 * 5.05373 * 1 2 3 25 25 H 1.09005 * 109.47313 * 305.12492 * 10 9 7 26 26 H 1.08998 * 109.46874 * 185.12627 * 10 9 7 27 27 H 0.97000 * 119.99660 * 0.71759 * 11 10 9 28 28 H 1.07997 * 120.04191 * 359.97438 * 13 12 11 29 29 H 1.07998 * 119.95763 * 179.97438 * 14 13 12 30 30 H 1.08009 * 119.92159 * 180.02562 * 15 14 13 31 31 H 1.09004 * 112.84733 * 189.67054 * 17 16 15 32 32 H 1.08999 * 113.61445 * 254.54485 * 18 17 16 33 33 H 1.09004 * 113.61151 * 25.44476 * 18 17 16 34 34 H 1.09001 * 113.61637 * 220.01756 * 19 18 17 35 35 H 1.09001 * 113.68737 * 89.12579 * 19 18 17 36 36 H 1.08996 * 113.61672 * 270.88473 * 20 19 18 37 37 H 1.08997 * 113.61139 * 139.97607 * 20 19 18 38 38 H 1.07998 * 120.03567 * 179.72350 * 21 16 15 39 39 H 1.09009 * 117.49691 * 214.99917 * 22 9 7 40 40 H 1.08998 * 117.50293 * 0.02562 * 22 9 7 41 41 H 1.08998 * 117.49990 * 359.97305 * 23 9 7 42 42 H 1.08993 * 117.49965 * 144.97534 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0792 -1.1972 -0.1083 9 6 1.2586 -2.4949 0.1492 10 6 0.6983 -3.0871 -1.1455 11 7 1.8044 -3.4601 -2.0307 12 6 1.5388 -4.0117 -3.2861 13 6 0.2261 -4.2078 -3.6967 14 6 -0.0329 -4.7538 -4.9383 15 6 1.0126 -5.1058 -5.7725 16 6 2.3201 -4.9120 -5.3669 17 6 3.4560 -5.2966 -6.2795 18 6 3.2137 -6.6052 -7.0501 19 6 3.8579 -5.9170 -8.2651 20 6 3.4223 -4.5811 -7.6403 21 6 2.5864 -4.3715 -4.1240 22 6 1.7508 -3.4725 1.2182 23 6 0.4462 -2.7000 1.4294 24 1 -0.4850 0.8368 -0.0740 25 1 0.0698 -2.3473 -1.6413 26 1 0.1046 -3.9713 -0.9134 27 1 2.7213 -3.3240 -1.7449 28 1 -0.5907 -3.9342 -3.0453 29 1 -1.0531 -4.9069 -5.2579 30 1 0.8071 -5.5324 -6.7433 31 1 4.4276 -5.2533 -5.7873 32 1 3.7895 -7.4489 -6.6699 33 1 2.1586 -6.8403 -7.1902 34 1 3.3600 -6.1407 -9.2085 35 1 4.9394 -6.0426 -8.3170 36 1 2.4244 -4.2629 -7.9416 37 1 4.1668 -3.7908 -7.7365 38 1 3.6080 -4.2245 -3.8061 39 1 1.6755 -4.5377 0.9991 40 1 2.6140 -3.1746 1.8135 41 1 0.4517 -1.8944 2.1635 42 1 -0.4875 -3.2566 1.3492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594704192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:27 Heat of formation + Delta-G solvation = 58.348851 kcal Electronic energy + Delta-G solvation = -20102.679623 eV Core-core repulsion = 17241.192102 eV Total energy + Delta-G solvation = -2861.487521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76817 -38.04000 -36.74328 -33.95500 -31.99246 -30.80082 -28.93971 -25.84979 -25.60519 -25.45217 -24.59199 -22.01546 -21.19741 -20.78478 -19.18506 -18.87428 -16.84085 -16.33405 -15.60655 -15.33055 -14.74619 -14.64151 -14.52488 -13.89430 -13.44108 -13.28098 -12.98307 -12.79171 -12.48702 -12.44455 -12.26413 -11.63041 -11.50806 -11.28048 -11.03508 -10.99234 -10.90929 -10.56409 -10.44540 -10.35946 -10.29777 -10.08951 -9.58455 -9.45389 -8.86452 -8.50629 -8.28169 -8.21778 -6.68300 -6.09874 -4.17507 1.85960 2.14003 3.26537 3.31840 3.34045 4.19716 4.27520 4.35456 4.63186 4.71152 4.72106 5.06549 5.18511 5.26048 5.30604 5.36305 5.60016 5.64722 5.65268 5.75837 5.81308 5.88803 5.93504 5.96393 6.05565 6.11140 6.29001 6.34953 6.36822 6.41630 6.50071 6.56396 6.67005 6.80654 6.89547 6.99511 7.04522 7.12703 7.37813 7.38804 7.48595 7.79958 8.13238 8.33454 8.55735 8.82781 9.49045 10.98070 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.004095 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.419336 B = 6835.160422 C = 7339.331426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.058 0.942 9 C 0.031 3.969 10 C 0.166 3.834 11 N -0.720 5.720 12 C 0.236 3.764 13 C -0.209 4.209 14 C -0.069 4.069 15 C -0.197 4.197 16 C -0.026 4.026 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.130 4.130 21 C -0.206 4.206 22 C -0.211 4.211 23 C -0.149 4.149 24 H 0.262 0.738 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.399 0.601 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 -10.377 -11.563 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.030 3.970 10 C 0.042 3.958 11 N -0.344 5.344 12 C 0.128 3.872 13 C -0.232 4.232 14 C -0.088 4.088 15 C -0.218 4.218 16 C -0.027 4.027 17 C -0.090 4.090 18 C -0.170 4.170 19 C -0.182 4.182 20 C -0.168 4.168 21 C -0.230 4.230 22 C -0.248 4.248 23 C -0.187 4.187 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.234 0.766 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.196 -10.165 -11.324 15.549 hybrid contribution 0.674 1.119 0.231 1.327 sum 3.870 -9.046 -11.093 14.828 Atomic orbital electron populations 1.69955 1.05875 1.27007 1.48477 1.24960 0.94810 0.98898 0.94254 0.86694 0.79705 0.83157 0.78679 1.20230 1.21233 1.20195 1.20303 0.92842 0.88664 1.51801 0.92363 1.18974 0.98431 0.93877 0.85699 1.20973 0.87870 0.95877 0.91031 1.44909 1.09722 1.65898 1.13830 1.17963 0.93325 0.90164 0.85781 1.20646 0.95111 1.08932 0.98503 1.20757 0.98218 0.96467 0.93383 1.20473 0.92058 1.08776 1.00466 1.19273 0.93728 0.96355 0.93310 1.21490 0.97184 0.96561 0.93753 1.23014 1.01442 0.96454 0.96082 1.22845 1.00518 0.97082 0.97754 1.22966 1.02016 0.96504 0.95289 1.20387 0.97555 1.09578 0.95447 1.23016 0.98578 0.95695 1.07506 1.22492 0.92242 1.01089 1.02903 0.92830 0.91596 0.95433 0.76632 0.86396 0.87008 0.87352 0.89006 0.91689 0.89621 0.91670 0.90429 0.89777 0.91605 0.86927 0.91648 0.90433 0.89870 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.16 12.92 55.43 0.72 -23.45 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.79 29.55 -169.99 -5.02 15.76 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.50 -12.98 8.66 -34.44 -0.30 -13.28 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.72 1.37 -155.66 -0.21 0.51 16 10 C 0.17 3.63 4.74 -4.05 -0.02 3.61 16 11 N -0.72 -14.23 5.65 -58.64 -0.33 -14.56 16 12 C 0.24 4.33 6.65 -83.79 -0.56 3.78 16 13 C -0.21 -3.68 9.31 -39.38 -0.37 -4.05 16 14 C -0.07 -1.06 10.04 -39.61 -0.40 -1.45 16 15 C -0.20 -2.81 8.54 -39.55 -0.34 -3.15 16 16 C -0.03 -0.38 5.29 -104.65 -0.55 -0.93 16 17 C -0.07 -0.84 3.98 -90.96 -0.36 -1.20 16 18 C -0.13 -1.32 7.46 -25.92 -0.19 -1.52 16 19 C -0.14 -1.28 8.08 -25.92 -0.21 -1.49 16 20 C -0.13 -1.37 7.54 -25.92 -0.20 -1.56 16 21 C -0.21 -3.40 9.56 -39.38 -0.38 -3.77 16 22 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 23 C -0.15 -3.38 9.42 -26.69 -0.25 -3.64 16 24 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 25 H 0.07 1.61 7.92 -51.93 -0.41 1.20 16 26 H 0.03 0.57 7.93 -51.93 -0.41 0.16 16 27 H 0.40 7.77 8.41 -40.82 -0.34 7.43 16 28 H 0.12 2.11 6.74 -52.49 -0.35 1.76 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.11 1.32 6.72 -52.48 -0.35 0.96 16 31 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.86 6.40 -51.93 -0.33 0.52 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.91 7.64 -51.93 -0.40 0.52 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.11 1.72 8.05 -52.49 -0.42 1.30 16 39 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -26.87 342.62 -10.96 -37.84 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.79 Total: 10.18 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -4.69 Total: -30.94 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.39 Total: -38.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.87 -10.96 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.184 kcal (2) G-P(sol) polarization free energy of solvation -26.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds