Wall clock time and date at job start Mon Mar 30 2020 01:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00072 * 2 1 4 4 H 1.48496 * 109.46995 * 240.00235 * 3 2 1 5 5 H 1.48493 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46711 * 120.00543 * 3 2 1 7 7 C 1.37882 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 173.38252 * 7 2 1 9 9 C 1.50704 * 119.99778 * 353.38654 * 7 2 1 10 10 C 1.52996 * 115.55052 * 85.36089 * 9 7 2 11 11 N 1.46498 * 109.47386 * 65.12360 * 10 9 7 12 12 C 1.39679 * 120.00257 * 180.72346 * 11 10 9 13 13 C 1.38930 * 120.07008 * 359.97438 * 12 11 10 14 14 C 1.38086 * 119.91844 * 180.02562 * 13 12 11 15 15 C 1.38305 * 120.07608 * 0.02562 * 14 13 12 16 16 C 1.38256 * 120.15219 * 359.97315 * 15 14 13 17 17 C 1.50704 * 119.96434 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.69048 * 320.93639 * 17 16 15 19 19 C 1.53779 * 87.08165 * 139.99005 * 18 17 16 20 20 C 1.53781 * 87.08193 * 334.56821 * 19 18 17 21 21 C 1.38128 * 120.07333 * 0.29820 * 16 15 14 22 22 C 1.52994 * 117.49452 * 231.03116 * 9 7 2 23 23 C 1.52999 * 117.49611 * 299.69239 * 9 7 2 24 24 H 0.97001 * 119.99881 * 5.05373 * 1 2 3 25 25 H 1.09005 * 109.47313 * 305.12492 * 10 9 7 26 26 H 1.08998 * 109.46874 * 185.12627 * 10 9 7 27 27 H 0.97000 * 119.99660 * 0.71759 * 11 10 9 28 28 H 1.07997 * 120.04191 * 359.97438 * 13 12 11 29 29 H 1.07998 * 119.95763 * 179.97438 * 14 13 12 30 30 H 1.08009 * 119.92159 * 180.02562 * 15 14 13 31 31 H 1.09004 * 112.84733 * 189.67054 * 17 16 15 32 32 H 1.08999 * 113.61445 * 254.54485 * 18 17 16 33 33 H 1.09004 * 113.61151 * 25.44476 * 18 17 16 34 34 H 1.09001 * 113.61637 * 220.01756 * 19 18 17 35 35 H 1.09001 * 113.68737 * 89.12579 * 19 18 17 36 36 H 1.08996 * 113.61672 * 270.88473 * 20 19 18 37 37 H 1.08997 * 113.61139 * 139.97607 * 20 19 18 38 38 H 1.07998 * 120.03567 * 179.72350 * 21 16 15 39 39 H 1.09009 * 117.49691 * 214.99917 * 22 9 7 40 40 H 1.08998 * 117.50293 * 0.02562 * 22 9 7 41 41 H 1.08998 * 117.49990 * 359.97305 * 23 9 7 42 42 H 1.08993 * 117.49965 * 144.97534 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0792 -1.1972 -0.1083 9 6 1.2586 -2.4949 0.1492 10 6 0.6983 -3.0871 -1.1455 11 7 1.8044 -3.4601 -2.0307 12 6 1.5388 -4.0117 -3.2861 13 6 0.2261 -4.2078 -3.6967 14 6 -0.0329 -4.7538 -4.9383 15 6 1.0126 -5.1058 -5.7725 16 6 2.3201 -4.9120 -5.3669 17 6 3.4560 -5.2966 -6.2795 18 6 3.2137 -6.6052 -7.0501 19 6 3.8579 -5.9170 -8.2651 20 6 3.4223 -4.5811 -7.6403 21 6 2.5864 -4.3715 -4.1240 22 6 1.7508 -3.4725 1.2182 23 6 0.4462 -2.7000 1.4294 24 1 -0.4850 0.8368 -0.0740 25 1 0.0698 -2.3473 -1.6413 26 1 0.1046 -3.9713 -0.9134 27 1 2.7213 -3.3240 -1.7449 28 1 -0.5907 -3.9342 -3.0453 29 1 -1.0531 -4.9069 -5.2579 30 1 0.8071 -5.5324 -6.7433 31 1 4.4276 -5.2533 -5.7873 32 1 3.7895 -7.4489 -6.6699 33 1 2.1586 -6.8403 -7.1902 34 1 3.3600 -6.1407 -9.2085 35 1 4.9394 -6.0426 -8.3170 36 1 2.4244 -4.2629 -7.9416 37 1 4.1668 -3.7908 -7.7365 38 1 3.6080 -4.2245 -3.8061 39 1 1.6755 -4.5377 0.9991 40 1 2.6140 -3.1746 1.8135 41 1 0.4517 -1.8944 2.1635 42 1 -0.4875 -3.2566 1.3492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594704192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:26 Heat of formation + Delta-G solvation = 47.181007 kcal Electronic energy + Delta-G solvation = -20103.163897 eV Core-core repulsion = 17241.192102 eV Total energy + Delta-G solvation = -2861.971795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85607 -39.30568 -38.29473 -35.40175 -34.00097 -31.98940 -30.32839 -27.71002 -26.83658 -26.37832 -25.91210 -23.30941 -22.89660 -21.97745 -20.97860 -19.85225 -18.26136 -17.92613 -16.96992 -16.60883 -16.44139 -16.00767 -15.69581 -15.51524 -14.91942 -14.49445 -14.43211 -14.26745 -13.77590 -13.48251 -13.29442 -13.26888 -12.98790 -12.87414 -12.68558 -12.42118 -12.38484 -12.06818 -12.04891 -11.43253 -11.30904 -11.28406 -11.01733 -10.96612 -10.62230 -10.46168 -10.04519 -9.49075 -8.15071 -8.09386 -6.24528 0.61354 0.86899 1.39750 1.40768 1.47358 2.39510 2.70661 3.04320 3.15552 3.52555 3.81137 3.83736 3.94603 4.16062 4.20712 4.22616 4.28417 4.42811 4.53848 4.62446 4.64563 4.70146 4.78182 4.81512 4.90754 4.94887 4.96531 4.97207 5.13536 5.15413 5.16874 5.23397 5.24885 5.37015 5.57952 5.59988 5.60688 5.62248 5.74697 5.76112 5.94196 6.17328 6.34879 6.65523 6.80131 7.07561 7.43944 8.94565 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.004095 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.419336 B = 6835.160422 C = 7339.331426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.053 0.947 9 C 0.008 3.992 10 C 0.188 3.812 11 N -0.727 5.727 12 C 0.211 3.789 13 C -0.231 4.231 14 C -0.071 4.071 15 C -0.190 4.190 16 C -0.024 4.024 17 C -0.081 4.081 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.216 4.216 22 C -0.183 4.183 23 C -0.156 4.156 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.398 0.602 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -11.705 -13.397 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.007 3.993 10 C 0.063 3.937 11 N -0.353 5.353 12 C 0.105 3.895 13 C -0.254 4.254 14 C -0.089 4.089 15 C -0.210 4.210 16 C -0.025 4.025 17 C -0.099 4.099 18 C -0.167 4.167 19 C -0.170 4.170 20 C -0.170 4.170 21 C -0.239 4.239 22 C -0.220 4.220 23 C -0.194 4.194 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.232 0.768 28 H 0.123 0.877 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.218 -11.513 -13.181 18.002 hybrid contribution 0.375 1.466 0.709 1.671 sum 4.593 -10.047 -12.473 16.662 Atomic orbital electron populations 1.70064 1.06990 1.27379 1.49763 1.25618 0.95509 1.01744 0.94326 0.85807 0.78535 0.79784 0.78651 1.20102 1.21185 1.19654 1.20583 0.92821 0.90048 1.51044 0.92861 1.19042 0.99411 0.94120 0.86719 1.20525 0.88009 0.94892 0.90293 1.44720 1.08849 1.67227 1.14484 1.18217 0.94279 0.91340 0.85668 1.20744 0.94597 1.10356 0.99701 1.21071 0.99971 0.95452 0.92411 1.20835 0.91586 1.07340 1.01210 1.19666 0.95086 0.94878 0.92860 1.21638 0.96159 0.98341 0.93784 1.23017 1.01860 0.95705 0.96084 1.22806 1.01224 0.95195 0.97768 1.22985 1.02034 0.97455 0.94500 1.20586 0.97406 1.09826 0.96073 1.22984 0.97441 0.96341 1.05242 1.22427 0.93660 1.01200 1.02130 0.93121 0.95265 0.94790 0.76784 0.87737 0.84541 0.84564 0.88795 0.91007 0.89440 0.90369 0.89412 0.90102 0.91512 0.86368 0.89437 0.90191 0.91993 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.09 12.92 21.45 0.28 -50.82 16 2 C 0.03 1.56 5.39 84.66 0.46 2.02 16 3 Si 0.95 43.18 29.55 68.60 2.03 45.21 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.51 -26.82 8.66 25.60 0.22 -26.60 16 8 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 9 C 0.01 0.37 1.37 -52.93 -0.07 0.30 16 10 C 0.19 8.42 4.74 86.38 0.41 8.83 16 11 N -0.73 -29.39 5.65 -339.43 -1.92 -31.30 16 12 C 0.21 7.83 6.65 38.21 0.25 8.09 16 13 C -0.23 -8.22 9.31 22.40 0.21 -8.01 16 14 C -0.07 -2.05 10.04 22.25 0.22 -1.83 16 15 C -0.19 -4.96 8.54 22.29 0.19 -4.77 16 16 C -0.02 -0.66 5.29 -19.89 -0.11 -0.77 16 17 C -0.08 -1.71 3.98 -11.01 -0.04 -1.75 16 18 C -0.13 -2.16 7.46 31.12 0.23 -1.93 16 19 C -0.13 -1.89 8.08 31.12 0.25 -1.63 16 20 C -0.13 -2.42 7.54 31.12 0.23 -2.19 16 21 C -0.22 -7.00 9.56 22.40 0.21 -6.79 16 22 C -0.18 -7.55 9.96 30.62 0.30 -7.24 16 23 C -0.16 -7.14 9.42 30.62 0.29 -6.85 16 24 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 25 H 0.03 1.50 7.92 -2.38 -0.02 1.48 16 26 H 0.03 1.45 7.93 -2.39 -0.02 1.43 16 27 H 0.40 15.81 8.41 -92.71 -0.78 15.03 16 28 H 0.10 3.91 6.74 -2.91 -0.02 3.89 16 29 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.14 2.81 6.72 -2.91 -0.02 2.79 16 31 H 0.09 1.94 8.08 -2.39 -0.02 1.92 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.43 6.40 -2.39 -0.02 1.42 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.53 7.64 -2.39 -0.02 1.51 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.12 3.59 8.05 -2.91 -0.02 3.57 16 39 H 0.09 3.22 8.14 -2.38 -0.02 3.21 16 40 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -57.85 342.62 3.87 -53.98 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.22 Total: 34.06 kcal Atomic # 6 Polarization: -54.40 SS G_CDS: 3.27 Total: -51.13 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -1.64 Total: -82.12 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -57.85 3.87 -53.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.162 kcal (2) G-P(sol) polarization free energy of solvation -57.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds