Wall clock time and date at job start Mon Mar 30 2020 01:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99563 * 2 1 4 4 C 1.53002 * 109.46856 * 125.00019 * 3 2 1 5 5 C 1.50699 * 109.46781 * 184.88078 * 4 3 2 6 6 C 1.38122 * 120.04219 * 263.58713 * 5 4 3 7 7 C 1.38267 * 120.07587 * 180.02562 * 6 5 4 8 8 C 1.38308 * 120.15008 * 359.97438 * 7 6 5 9 9 C 1.38086 * 120.07339 * 0.02562 * 8 7 6 10 10 C 1.38897 * 120.03059 * 83.59047 * 5 4 3 11 11 N 1.39666 * 120.07928 * 0.02562 * 10 5 4 12 12 C 1.46496 * 120.00309 * 174.53389 * 11 10 5 13 13 C 1.52999 * 109.47335 * 175.73168 * 12 11 10 14 14 C 1.50701 * 115.54544 * 278.47156 * 13 12 11 15 15 H 1.08005 * 119.99927 * 122.32100 * 14 13 12 16 16 C 1.37876 * 120.00116 * 302.32159 * 14 13 12 17 17 N 1.31518 * 119.99753 * 190.99672 * 16 14 13 18 18 Si 1.86803 * 120.00161 * 11.00401 * 16 14 13 19 19 H 1.48501 * 109.47118 * 95.41245 * 18 16 14 20 20 H 1.48497 * 109.46845 * 215.41297 * 18 16 14 21 21 H 1.48494 * 109.46619 * 335.41016 * 18 16 14 22 22 C 1.53003 * 117.50327 * 132.76980 * 13 12 11 23 23 C 1.52994 * 117.50464 * 64.14197 * 13 12 11 24 24 H 1.07997 * 120.00383 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99948 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00383 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46966 * 5.00221 * 3 2 1 28 28 H 1.09003 * 109.46980 * 244.99734 * 3 2 1 29 29 H 1.08997 * 109.46713 * 64.88660 * 4 3 2 30 30 H 1.08999 * 109.47166 * 304.88469 * 4 3 2 31 31 H 1.07996 * 119.96117 * 0.27268 * 6 5 4 32 32 H 1.08000 * 119.92451 * 179.97438 * 7 6 5 33 33 H 1.07993 * 119.96574 * 180.02562 * 8 7 6 34 34 H 1.07994 * 120.03685 * 180.02562 * 9 8 7 35 35 H 0.97000 * 120.00220 * 354.53594 * 11 10 5 36 36 H 1.09007 * 109.47346 * 295.72810 * 12 11 10 37 37 H 1.08998 * 109.47505 * 55.72428 * 12 11 10 38 38 H 0.97003 * 119.99894 * 180.02562 * 17 16 14 39 39 H 1.08998 * 117.49710 * 359.97438 * 22 13 12 40 40 H 1.09000 * 117.50006 * 145.01861 * 22 13 12 41 41 H 1.08999 * 117.50438 * 214.98159 * 23 13 12 42 42 H 1.09009 * 117.49487 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7010 2.6832 1.2524 6 6 4.9465 2.8703 0.6854 7 6 5.5585 4.1085 0.7503 8 6 4.9260 5.1636 1.3824 9 6 3.6808 4.9835 1.9513 10 6 3.0630 3.7406 1.8880 11 7 1.8038 3.5548 2.4629 12 6 1.1847 4.6345 3.2356 13 6 -0.2237 4.2146 3.6610 14 6 -1.2961 4.3852 2.6160 15 1 -1.8814 3.5347 2.2991 16 6 -1.5301 5.6271 2.0647 17 7 -2.5962 5.8259 1.3207 18 14 -0.3328 7.0272 2.3742 19 1 0.6324 7.1111 1.2487 20 1 -1.0821 8.3049 2.4801 21 1 0.4030 6.7784 3.6399 22 6 -0.6177 4.4417 5.1219 23 6 -0.3485 3.0239 4.6135 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3584 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.7924 0.5610 1.0476 30 1 2.4879 1.1490 2.1062 31 1 5.4411 2.0496 0.1873 32 1 6.5325 4.2519 0.3065 33 1 5.4065 6.1296 1.4310 34 1 3.1873 5.8079 2.4444 35 1 1.3391 2.7108 2.3507 36 1 1.7862 4.8384 4.1216 37 1 1.1261 5.5333 2.6217 38 1 -2.7607 6.6995 0.9324 39 1 0.1266 4.8899 5.7800 40 1 -1.6528 4.7146 5.3274 41 1 -1.2065 2.3641 4.4847 42 1 0.5728 2.5393 4.9369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594708007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:41 Heat of formation + Delta-G solvation = 65.849745 kcal Electronic energy + Delta-G solvation = -20919.548630 eV Core-core repulsion = 18058.386372 eV Total energy + Delta-G solvation = -2861.162258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.48075 -37.33602 -35.54798 -34.19310 -32.22580 -32.10898 -29.22152 -28.23321 -26.47452 -24.90127 -23.73067 -21.70121 -21.22302 -20.51959 -19.56487 -19.12606 -17.09421 -16.53784 -15.73556 -15.29481 -15.17315 -14.81296 -14.06880 -13.73851 -13.68615 -13.41444 -13.19137 -13.09266 -12.86745 -12.47990 -12.26753 -12.06155 -11.71532 -11.29823 -11.10847 -10.92654 -10.72398 -10.62840 -10.51575 -10.34935 -10.24221 -9.72312 -9.56941 -9.18475 -8.97792 -8.74786 -8.56474 -8.41688 -6.84381 -6.21161 -4.20150 1.73406 2.01032 2.49923 3.22317 3.28771 3.33016 3.98106 4.21135 4.32216 4.86628 4.95145 5.09421 5.16249 5.25146 5.35800 5.44944 5.51468 5.62198 5.63949 5.74850 5.80569 5.89535 5.91035 6.06466 6.10157 6.13842 6.14238 6.17944 6.36709 6.37480 6.42950 6.46033 6.67102 6.73686 6.84402 6.85893 6.92582 6.95438 7.00760 7.07354 7.28782 7.65099 7.89489 8.33399 8.40012 8.82292 9.42565 10.90425 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.007560 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.564457 B = 3703.042428 C = 4676.321062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C -0.093 4.093 4 C -0.063 4.063 5 C -0.170 4.170 6 C -0.069 4.069 7 C -0.195 4.195 8 C -0.074 4.074 9 C -0.205 4.205 10 C 0.234 3.766 11 N -0.722 5.722 12 C 0.155 3.845 13 C -0.009 4.009 14 C -0.486 4.486 15 H 0.077 0.923 16 C 0.081 3.919 17 N -0.889 5.889 18 Si 0.874 3.126 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.257 1.257 22 C -0.191 4.191 23 C -0.182 4.182 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.403 0.597 36 H 0.040 0.960 37 H 0.053 0.947 38 H 0.266 0.734 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.530 -6.653 0.069 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C -0.131 4.131 4 C -0.100 4.100 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.215 4.215 8 C -0.093 4.093 9 C -0.228 4.228 10 C 0.127 3.873 11 N -0.349 5.349 12 C 0.031 3.969 13 C -0.010 4.010 14 C -0.523 4.523 15 H 0.095 0.905 16 C -0.122 4.122 17 N -0.525 5.525 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.181 1.181 22 C -0.230 4.230 23 C -0.219 4.219 24 H 0.122 0.878 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.240 0.760 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.286 -6.351 0.079 13.831 hybrid contribution 0.318 0.637 0.028 0.713 sum 12.604 -5.714 0.107 13.840 Atomic orbital electron populations 1.23979 0.96081 1.02189 1.00271 1.22904 0.95987 0.98144 1.00786 1.20806 0.98250 0.95708 0.98308 1.20290 0.97692 0.93627 0.98432 1.19284 0.96685 0.94934 1.06566 1.20668 0.93833 0.96841 0.97470 1.20705 1.00940 0.93752 1.06121 1.20791 0.94168 0.98210 0.96130 1.20656 0.97624 0.96183 1.08354 1.17780 0.85735 0.92896 0.90904 1.44943 1.16027 1.17844 1.56044 1.21484 0.92983 0.89325 0.93103 1.19509 0.92670 0.98689 0.90177 1.20247 1.15842 0.95949 1.20291 0.90467 1.24928 0.94679 0.98282 0.94350 1.69916 1.25266 1.23701 1.33640 0.87079 0.81374 0.81608 0.79555 1.20343 1.22288 1.18135 1.23096 1.01359 0.99043 0.99457 1.22715 1.01287 0.91225 1.06685 0.87837 0.88902 0.87930 0.90675 0.91243 0.91439 0.91540 0.86825 0.87142 0.86890 0.86672 0.76042 0.94216 0.92933 0.92439 0.91220 0.89206 0.89650 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 29.01 0.42 -2.13 16 2 C -0.16 -2.04 9.52 -36.02 -0.34 -2.39 16 3 C -0.09 -1.29 5.55 -27.88 -0.15 -1.45 16 4 C -0.06 -0.84 4.71 -27.88 -0.13 -0.97 16 5 C -0.17 -2.61 5.15 -104.42 -0.54 -3.15 16 6 C -0.07 -0.96 9.67 -39.61 -0.38 -1.34 16 7 C -0.19 -2.69 10.04 -39.54 -0.40 -3.09 16 8 C -0.07 -1.11 10.04 -39.61 -0.40 -1.51 16 9 C -0.21 -3.58 9.29 -39.38 -0.37 -3.95 16 10 C 0.23 4.14 6.63 -83.79 -0.56 3.59 16 11 N -0.72 -13.61 5.56 -58.63 -0.33 -13.94 16 12 C 0.15 3.21 3.67 -4.04 -0.01 3.20 16 13 C -0.01 -0.20 0.96 -155.66 -0.15 -0.35 16 14 C -0.49 -12.98 9.48 -34.44 -0.33 -13.31 16 15 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 17 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 18 Si 0.87 21.20 24.90 -169.99 -4.23 16.97 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -5.79 5.79 56.52 0.33 -5.46 16 22 C -0.19 -3.89 9.88 -26.73 -0.26 -4.15 16 23 C -0.18 -3.52 9.79 -26.73 -0.26 -3.78 16 24 H 0.10 1.60 7.84 -52.49 -0.41 1.18 16 25 H 0.09 1.09 8.06 -52.48 -0.42 0.67 16 26 H 0.10 1.12 8.06 -52.49 -0.42 0.69 16 27 H 0.07 1.24 7.56 -51.93 -0.39 0.85 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 30 H 0.07 0.93 6.98 -51.93 -0.36 0.56 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.12 2.07 6.64 -52.49 -0.35 1.72 16 35 H 0.40 7.41 6.30 -40.82 -0.26 7.15 16 36 H 0.04 0.78 7.93 -51.93 -0.41 0.37 16 37 H 0.05 1.19 2.52 -51.93 -0.13 1.06 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -28.36 339.71 -9.22 -37.57 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.59 Total: 12.49 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: -3.96 Total: -32.64 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.45 Total: -39.52 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.23 Total: 16.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.36 -9.22 -37.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.424 kcal (2) G-P(sol) polarization free energy of solvation -28.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds