Wall clock time and date at job start Mon Mar 30 2020 01:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99563 * 2 1 4 4 C 1.53002 * 109.46856 * 125.00019 * 3 2 1 5 5 C 1.50699 * 109.46781 * 184.88078 * 4 3 2 6 6 C 1.38122 * 120.04219 * 263.58713 * 5 4 3 7 7 C 1.38267 * 120.07587 * 180.02562 * 6 5 4 8 8 C 1.38308 * 120.15008 * 359.97438 * 7 6 5 9 9 C 1.38086 * 120.07339 * 0.02562 * 8 7 6 10 10 C 1.38897 * 120.03059 * 83.59047 * 5 4 3 11 11 N 1.39666 * 120.07928 * 0.02562 * 10 5 4 12 12 C 1.46496 * 120.00309 * 174.53389 * 11 10 5 13 13 C 1.52999 * 109.47335 * 175.73168 * 12 11 10 14 14 C 1.50701 * 115.54544 * 278.47156 * 13 12 11 15 15 H 1.08005 * 119.99927 * 122.32100 * 14 13 12 16 16 C 1.37876 * 120.00116 * 302.32159 * 14 13 12 17 17 N 1.31518 * 119.99753 * 190.99672 * 16 14 13 18 18 Si 1.86803 * 120.00161 * 11.00401 * 16 14 13 19 19 H 1.48501 * 109.47118 * 95.41245 * 18 16 14 20 20 H 1.48497 * 109.46845 * 215.41297 * 18 16 14 21 21 H 1.48494 * 109.46619 * 335.41016 * 18 16 14 22 22 C 1.53003 * 117.50327 * 132.76980 * 13 12 11 23 23 C 1.52994 * 117.50464 * 64.14197 * 13 12 11 24 24 H 1.07997 * 120.00383 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99948 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00383 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46966 * 5.00221 * 3 2 1 28 28 H 1.09003 * 109.46980 * 244.99734 * 3 2 1 29 29 H 1.08997 * 109.46713 * 64.88660 * 4 3 2 30 30 H 1.08999 * 109.47166 * 304.88469 * 4 3 2 31 31 H 1.07996 * 119.96117 * 0.27268 * 6 5 4 32 32 H 1.08000 * 119.92451 * 179.97438 * 7 6 5 33 33 H 1.07993 * 119.96574 * 180.02562 * 8 7 6 34 34 H 1.07994 * 120.03685 * 180.02562 * 9 8 7 35 35 H 0.97000 * 120.00220 * 354.53594 * 11 10 5 36 36 H 1.09007 * 109.47346 * 295.72810 * 12 11 10 37 37 H 1.08998 * 109.47505 * 55.72428 * 12 11 10 38 38 H 0.97003 * 119.99894 * 180.02562 * 17 16 14 39 39 H 1.08998 * 117.49710 * 359.97438 * 22 13 12 40 40 H 1.09000 * 117.50006 * 145.01861 * 22 13 12 41 41 H 1.08999 * 117.50438 * 214.98159 * 23 13 12 42 42 H 1.09009 * 117.49487 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7010 2.6832 1.2524 6 6 4.9465 2.8703 0.6854 7 6 5.5585 4.1085 0.7503 8 6 4.9260 5.1636 1.3824 9 6 3.6808 4.9835 1.9513 10 6 3.0630 3.7406 1.8880 11 7 1.8038 3.5548 2.4629 12 6 1.1847 4.6345 3.2356 13 6 -0.2237 4.2146 3.6610 14 6 -1.2961 4.3852 2.6160 15 1 -1.8814 3.5347 2.2991 16 6 -1.5301 5.6271 2.0647 17 7 -2.5962 5.8259 1.3207 18 14 -0.3328 7.0272 2.3742 19 1 0.6324 7.1111 1.2487 20 1 -1.0821 8.3049 2.4801 21 1 0.4030 6.7784 3.6399 22 6 -0.6177 4.4417 5.1219 23 6 -0.3485 3.0239 4.6135 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3584 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.7924 0.5610 1.0476 30 1 2.4879 1.1490 2.1062 31 1 5.4411 2.0496 0.1873 32 1 6.5325 4.2519 0.3065 33 1 5.4065 6.1296 1.4310 34 1 3.1873 5.8079 2.4444 35 1 1.3391 2.7108 2.3507 36 1 1.7862 4.8384 4.1216 37 1 1.1261 5.5333 2.6217 38 1 -2.7607 6.6995 0.9324 39 1 0.1266 4.8899 5.7800 40 1 -1.6528 4.7146 5.3274 41 1 -1.2065 2.3641 4.4847 42 1 0.5728 2.5393 4.9369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594708007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:41 Heat of formation + Delta-G solvation = 51.452961 kcal Electronic energy + Delta-G solvation = -20920.172922 eV Core-core repulsion = 18058.386372 eV Total energy + Delta-G solvation = -2861.786549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71140 -38.95011 -36.63825 -35.57044 -34.33579 -33.22699 -30.48590 -29.44379 -28.22575 -26.62806 -24.84995 -23.25101 -22.54259 -21.72061 -20.91393 -20.63454 -18.68400 -18.05470 -17.26022 -16.97042 -16.28057 -16.04619 -15.52761 -15.20376 -15.01596 -14.90226 -14.76172 -14.40467 -14.29097 -13.84573 -13.73459 -13.33603 -13.06001 -12.92560 -12.57508 -12.36852 -12.20129 -12.04303 -12.01644 -11.64934 -11.57488 -11.44646 -11.12602 -10.77469 -10.62037 -10.42949 -10.24933 -9.56448 -8.37102 -8.15943 -6.38270 0.57617 0.82859 1.27409 1.29627 1.39024 1.43585 2.27488 2.55315 2.95031 3.03938 3.36365 3.85994 3.98389 4.00272 4.13185 4.22941 4.30188 4.36904 4.43029 4.45060 4.48353 4.55376 4.59817 4.70103 4.73466 4.78400 4.85404 4.99006 5.04053 5.05881 5.08915 5.24026 5.26441 5.35136 5.46934 5.56369 5.64765 5.72048 5.75352 5.81222 5.96174 6.13421 6.23715 6.53956 6.65157 6.96697 7.26936 8.78372 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.007560 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.564457 B = 3703.042428 C = 4676.321062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.091 4.091 4 C -0.057 4.057 5 C -0.174 4.174 6 C -0.069 4.069 7 C -0.188 4.188 8 C -0.081 4.081 9 C -0.231 4.231 10 C 0.205 3.795 11 N -0.730 5.730 12 C 0.165 3.835 13 C -0.036 4.036 14 C -0.480 4.480 15 H 0.034 0.966 16 C 0.025 3.975 17 N -0.941 5.941 18 Si 0.934 3.066 19 H -0.283 1.283 20 H -0.300 1.300 21 H -0.227 1.227 22 C -0.183 4.183 23 C -0.160 4.160 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.135 0.865 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.102 0.898 35 H 0.401 0.599 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.231 -7.759 0.776 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.164 4.164 3 C -0.129 4.129 4 C -0.094 4.094 5 C -0.179 4.179 6 C -0.087 4.087 7 C -0.208 4.208 8 C -0.099 4.099 9 C -0.254 4.254 10 C 0.101 3.899 11 N -0.358 5.358 12 C 0.041 3.959 13 C -0.037 4.037 14 C -0.518 4.518 15 H 0.052 0.948 16 C -0.173 4.173 17 N -0.580 5.580 18 Si 0.762 3.238 19 H -0.210 1.210 20 H -0.228 1.228 21 H -0.150 1.150 22 C -0.221 4.221 23 C -0.197 4.197 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.153 0.847 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.237 0.763 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.024 -7.472 0.802 17.698 hybrid contribution -0.787 0.878 -0.263 1.208 sum 15.237 -6.594 0.539 16.611 Atomic orbital electron populations 1.23966 0.96743 1.01636 1.02070 1.23072 0.95563 0.98755 0.99058 1.20758 0.97829 0.95030 0.99242 1.20281 0.97976 0.93585 0.97571 1.19572 0.97282 0.95079 1.05935 1.21088 0.93085 0.97983 0.96572 1.21135 1.01874 0.93179 1.04613 1.21100 0.93385 0.99798 0.95663 1.20787 0.98972 0.95908 1.09699 1.18073 0.85572 0.93991 0.92309 1.44803 1.16766 1.17230 1.57022 1.21201 0.92089 0.89140 0.93487 1.19393 0.92337 1.02094 0.89914 1.20407 1.16142 0.94318 1.20919 0.94775 1.25696 0.96080 1.01025 0.94479 1.70056 1.27559 1.24377 1.35988 0.86115 0.79114 0.78062 0.80557 1.20991 1.22816 1.14995 1.23121 1.01559 0.99693 0.97742 1.22735 1.02188 0.90652 1.04166 0.91132 0.86927 0.84737 0.94505 0.90199 0.88429 0.92344 0.83575 0.84035 0.84800 0.88031 0.76282 0.92563 0.95072 0.92583 0.88364 0.90357 0.90344 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.68 14.32 67.78 0.97 -4.71 16 2 C -0.15 -3.53 9.52 25.65 0.24 -3.29 16 3 C -0.09 -2.44 5.55 29.85 0.17 -2.28 16 4 C -0.06 -1.39 4.71 29.85 0.14 -1.25 16 5 C -0.17 -4.97 5.15 -19.73 -0.10 -5.07 16 6 C -0.07 -1.64 9.67 22.25 0.22 -1.43 16 7 C -0.19 -4.46 10.04 22.29 0.22 -4.24 16 8 C -0.08 -2.23 10.04 22.25 0.22 -2.00 16 9 C -0.23 -7.83 9.29 22.40 0.21 -7.62 16 10 C 0.21 7.10 6.63 38.22 0.25 7.35 16 11 N -0.73 -27.43 5.56 -339.42 -1.89 -29.32 16 12 C 0.17 6.74 3.67 86.38 0.32 7.06 16 13 C -0.04 -1.60 0.96 -52.93 -0.05 -1.65 16 14 C -0.48 -26.78 9.48 25.60 0.24 -26.54 16 15 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 16 C 0.03 1.47 5.47 84.65 0.46 1.93 16 17 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 18 Si 0.93 45.06 24.90 68.60 1.71 46.77 16 19 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 21 H -0.23 -9.73 5.79 99.48 0.58 -9.15 16 22 C -0.18 -7.14 9.88 30.60 0.30 -6.84 16 23 C -0.16 -6.01 9.79 30.59 0.30 -5.71 16 24 H 0.07 2.38 7.84 -2.91 -0.02 2.36 16 25 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 26 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 27 H 0.04 1.26 7.56 -2.39 -0.02 1.24 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 1.81 8.04 -2.39 -0.02 1.79 16 30 H 0.06 1.53 6.98 -2.39 -0.02 1.52 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.10 3.62 6.64 -2.91 -0.02 3.60 16 35 H 0.40 14.95 6.30 -92.71 -0.58 14.37 16 36 H 0.06 2.09 7.93 -2.38 -0.02 2.07 16 37 H 0.03 1.41 2.52 -2.39 -0.01 1.40 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.10 3.30 8.07 -2.39 -0.02 3.28 16 40 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -64.90 339.71 4.52 -60.38 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.28 Total: 36.86 kcal Atomic # 6 Polarization: -60.39 SS G_CDS: 4.12 Total: -56.27 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.59 Total: -87.74 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.71 Total: 46.77 kcal Total: -64.90 4.52 -60.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.834 kcal (2) G-P(sol) polarization free energy of solvation -64.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds