Wall clock time and date at job start Mon Mar 30 2020 01:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99802 * 2 1 4 4 H 1.48495 * 109.47260 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47160 * 119.99941 * 3 2 1 6 6 H 1.48495 * 109.47178 * 239.99943 * 3 2 1 7 7 C 1.37870 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99556 * 187.17471 * 7 2 1 9 9 C 1.50697 * 120.00212 * 7.17389 * 7 2 1 10 10 C 1.52998 * 115.55210 * 275.21332 * 9 7 2 11 11 N 1.46505 * 109.47011 * 297.92078 * 10 9 7 12 12 C 1.39674 * 119.99997 * 184.40841 * 11 10 9 13 13 C 1.38910 * 120.07551 * 359.72977 * 12 11 10 14 14 C 1.38105 * 119.92483 * 179.76755 * 13 12 11 15 15 C 1.38283 * 120.07324 * 0.50492 * 14 13 12 16 16 C 1.50701 * 119.92538 * 179.76946 * 15 14 13 17 17 C 1.53777 * 113.61226 * 37.47320 * 16 15 14 18 18 C 1.53779 * 87.08111 * 220.02002 * 17 16 15 19 19 C 1.53782 * 113.60933 * 299.97949 * 16 15 14 20 20 C 1.38284 * 120.15149 * 359.74803 * 15 14 13 21 21 C 1.38103 * 120.07455 * 0.02562 * 20 15 14 22 22 C 1.53002 * 117.49782 * 129.54009 * 9 7 2 23 23 C 1.53002 * 117.49799 * 60.88517 * 9 7 2 24 24 H 0.96998 * 120.00388 * 175.40704 * 1 2 3 25 25 H 1.08995 * 109.47249 * 57.91980 * 10 9 7 26 26 H 1.08994 * 109.47272 * 177.92379 * 10 9 7 27 27 H 0.97003 * 120.00045 * 4.41660 * 11 10 9 28 28 H 1.08003 * 120.03319 * 359.97438 * 13 12 11 29 29 H 1.07996 * 119.96228 * 180.25231 * 14 13 12 30 30 H 1.08998 * 112.85259 * 168.78596 * 16 15 14 31 31 H 1.09003 * 113.61995 * 334.57131 * 17 16 15 32 32 H 1.09000 * 113.61359 * 105.47701 * 17 16 15 33 33 H 1.08996 * 113.61758 * 270.88506 * 18 17 16 34 34 H 1.09002 * 113.61682 * 139.98390 * 18 17 16 35 35 H 1.08999 * 113.61309 * 254.52589 * 19 16 15 36 36 H 1.08999 * 113.62087 * 25.35063 * 19 16 15 37 37 H 1.07998 * 119.96514 * 180.02562 * 20 15 14 38 38 H 1.08000 * 120.03888 * 179.97438 * 21 20 15 39 39 H 1.09004 * 117.50003 * 0.02562 * 22 9 7 40 40 H 1.09003 * 117.49897 * 145.01952 * 22 9 7 41 41 H 1.09002 * 117.49699 * 214.98383 * 23 9 7 42 42 H 1.09005 * 117.49562 * 359.97086 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0781 -1.1975 0.1174 9 6 1.2599 -2.4941 -0.1619 10 6 0.6769 -3.0857 1.1231 11 7 1.7638 -3.3925 2.0563 12 6 1.4851 -4.0294 3.2677 13 6 0.1774 -4.3676 3.5917 14 6 -0.0940 -5.0017 4.7882 15 6 0.9330 -5.2905 5.6680 16 6 0.6324 -5.9778 6.9750 17 6 -0.4693 -7.0455 6.8704 18 6 -0.9834 -6.5352 8.2269 19 6 -0.3282 -5.1880 7.8796 20 6 2.2354 -4.9505 5.3509 21 6 2.5144 -4.3205 4.1541 22 6 1.7693 -3.4723 -1.2223 23 6 0.4694 -2.6986 -1.4558 24 1 -0.4850 -0.8373 -0.0673 25 1 -0.0015 -2.3651 1.5797 26 1 0.1315 -3.9995 0.8875 27 1 2.6769 -3.1531 1.8330 28 1 -0.6258 -4.1380 2.9071 29 1 -1.1100 -5.2686 5.0389 30 1 1.5300 -6.3235 7.4878 31 1 -1.1647 -6.8763 6.0482 32 1 -0.0916 -8.0674 6.9031 33 1 -0.5283 -7.0345 9.0822 34 1 -2.0704 -6.4880 8.2923 35 1 0.1636 -4.7103 8.7270 36 1 -0.9840 -4.5099 7.3335 37 1 3.0352 -5.1779 6.0400 38 1 3.5317 -4.0549 3.9072 39 1 2.6433 -3.1756 -1.8022 40 1 1.6889 -4.5373 -1.0047 41 1 -0.4658 -3.2548 -1.3917 42 1 0.4876 -1.8925 -2.1894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594708309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:40 Heat of formation + Delta-G solvation = 53.544871 kcal Electronic energy + Delta-G solvation = -20091.339260 eV Core-core repulsion = 17229.643423 eV Total energy + Delta-G solvation = -2861.695837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.79043 -38.15643 -36.99854 -34.07980 -31.95602 -30.53973 -29.48727 -26.14882 -25.61373 -24.91658 -24.06083 -22.42727 -21.40509 -20.68366 -19.53368 -19.06208 -17.11043 -16.60773 -15.76222 -15.55071 -14.88592 -14.16500 -14.14589 -13.78695 -13.63222 -13.16238 -13.01824 -12.88921 -12.75597 -12.46600 -12.39765 -12.19431 -11.70236 -11.56141 -10.96095 -10.84799 -10.77440 -10.54166 -10.46561 -10.37208 -10.16198 -10.10789 -9.69343 -9.33159 -8.61751 -8.53631 -8.52701 -8.39490 -6.71792 -6.42918 -4.18401 1.83877 2.01198 3.39358 3.39634 3.58615 4.10369 4.20839 4.45217 4.63658 4.71240 4.72380 5.06527 5.08121 5.24730 5.25773 5.31349 5.42100 5.60382 5.66169 5.73853 5.77107 5.79636 5.84431 5.92410 5.98005 6.08675 6.16405 6.18483 6.21083 6.30896 6.41949 6.44424 6.49453 6.58568 6.79260 6.80457 6.84151 7.08757 7.13646 7.16396 7.35508 8.01389 8.15563 8.30362 8.47245 8.78514 9.57077 10.96308 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.003838 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.607540 B = 7293.060057 C = 7633.963739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.030 3.970 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.575 4.575 8 H 0.052 0.948 9 C 0.008 3.992 10 C 0.162 3.838 11 N -0.718 5.718 12 C 0.230 3.770 13 C -0.205 4.205 14 C -0.064 4.064 15 C -0.154 4.154 16 C -0.057 4.057 17 C -0.136 4.136 18 C -0.145 4.145 19 C -0.134 4.134 20 C -0.066 4.066 21 C -0.208 4.208 22 C -0.193 4.193 23 C -0.173 4.173 24 H 0.274 0.726 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.402 0.598 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -11.339 11.408 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.613 4.613 8 H 0.070 0.930 9 C 0.008 3.992 10 C 0.038 3.962 11 N -0.342 5.342 12 C 0.123 3.877 13 C -0.228 4.228 14 C -0.083 4.083 15 C -0.157 4.157 16 C -0.076 4.076 17 C -0.174 4.174 18 C -0.183 4.183 19 C -0.171 4.171 20 C -0.084 4.084 21 C -0.231 4.231 22 C -0.231 4.231 23 C -0.212 4.212 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.237 0.763 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.138 -9.618 11.295 14.836 hybrid contribution 0.546 -1.530 -0.296 1.652 sum 0.408 -11.148 10.999 15.666 Atomic orbital electron populations 1.70747 1.06804 1.31553 1.44358 1.25756 0.96502 1.02282 0.93074 0.83583 0.74991 0.75484 0.76542 1.20749 1.21446 1.21450 1.21178 0.94166 0.89712 1.56216 0.92995 1.19270 0.98875 0.95464 0.85639 1.21000 0.88683 0.96280 0.90269 1.44811 1.10741 1.62325 1.16319 1.18001 0.93377 0.90143 0.86229 1.20612 0.95141 1.07634 0.99393 1.20599 0.98072 0.96613 0.92990 1.19242 0.93335 1.06239 0.96849 1.21277 0.97021 0.95791 0.93490 1.23050 0.98375 0.98426 0.97521 1.22841 1.00273 0.97557 0.97589 1.23013 0.98515 0.96318 0.99280 1.20619 0.95621 0.96761 0.95438 1.20516 0.97967 1.08459 0.96134 1.22886 0.97842 0.95584 1.06757 1.22752 0.93285 1.02190 1.02932 0.91421 0.92614 0.95031 0.76282 0.86524 0.86955 0.89394 0.89840 0.91821 0.90514 0.91729 0.91816 0.89956 0.87032 0.86732 0.90125 0.91422 0.91387 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 13.57 55.43 0.75 -25.02 16 2 C 0.03 0.82 5.39 -17.82 -0.10 0.73 16 3 Si 1.07 24.40 29.91 -169.99 -5.08 19.32 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.58 -15.11 8.45 -34.44 -0.29 -15.40 16 8 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 9 C 0.01 0.19 0.99 -155.66 -0.15 0.04 16 10 C 0.16 3.49 4.70 -4.04 -0.02 3.47 16 11 N -0.72 -14.24 5.63 -58.63 -0.33 -14.57 16 12 C 0.23 4.20 6.65 -83.79 -0.56 3.64 16 13 C -0.20 -3.54 9.29 -39.38 -0.37 -3.90 16 14 C -0.06 -0.95 8.60 -39.61 -0.34 -1.30 16 15 C -0.15 -2.15 5.29 -104.59 -0.55 -2.71 16 16 C -0.06 -0.64 3.98 -90.96 -0.36 -1.01 16 17 C -0.14 -1.36 7.45 -25.92 -0.19 -1.56 16 18 C -0.15 -1.30 8.08 -25.92 -0.21 -1.50 16 19 C -0.13 -1.39 7.55 -25.92 -0.20 -1.58 16 20 C -0.07 -0.95 9.70 -39.61 -0.38 -1.33 16 21 C -0.21 -3.37 9.90 -39.38 -0.39 -3.76 16 22 C -0.19 -4.04 9.95 -26.70 -0.27 -4.31 16 23 C -0.17 -3.84 8.74 -26.69 -0.23 -4.07 16 24 H 0.27 7.75 6.19 -40.82 -0.25 7.50 16 25 H 0.06 1.34 7.78 -51.93 -0.40 0.93 16 26 H 0.03 0.64 7.70 -51.93 -0.40 0.24 16 27 H 0.40 8.01 8.24 -40.82 -0.34 7.67 16 28 H 0.12 2.04 6.73 -52.48 -0.35 1.68 16 29 H 0.11 1.45 6.65 -52.49 -0.35 1.10 16 30 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 31 H 0.08 0.87 6.30 -51.93 -0.33 0.54 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.92 7.72 -51.93 -0.40 0.52 16 37 H 0.11 1.34 8.05 -52.49 -0.42 0.92 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -27.71 339.60 -10.83 -38.54 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.68 Total: 11.17 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: -4.61 Total: -34.55 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.42 Total: -39.59 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.32 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.71 -10.83 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.086 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds