Wall clock time and date at job start Mon Mar 30 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48504 * 109.47377 * 84.70911 * 3 2 1 5 5 H 1.48496 * 109.47266 * 324.70914 * 3 2 1 6 6 H 1.48499 * 109.47300 * 204.70796 * 3 2 1 7 7 C 1.38814 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99196 * 19.65788 * 7 2 1 9 9 N 1.36929 * 120.00265 * 199.65176 * 7 2 1 10 10 C 1.46500 * 119.99992 * 39.88538 * 9 7 2 11 11 C 1.52996 * 109.47092 * 89.99797 * 10 9 7 12 12 C 1.52995 * 109.47059 * 185.10580 * 11 10 9 13 13 H 1.08996 * 110.26811 * 58.27998 * 12 11 10 14 14 C 1.54342 * 110.30578 * 296.20323 * 12 11 10 15 15 C 1.54348 * 102.39631 * 214.73018 * 14 12 11 16 16 C 1.51370 * 105.16661 * 26.34429 * 15 14 12 17 17 C 1.38501 * 130.38968 * 162.81338 * 16 15 14 18 18 C 1.38102 * 120.21663 * 180.02562 * 17 16 15 19 19 C 1.38258 * 119.93345 * 359.97438 * 18 17 16 20 20 C 1.38104 * 119.93253 * 0.02562 * 19 18 17 21 21 C 1.38215 * 109.76052 * 342.81587 * 16 15 14 22 22 C 1.46501 * 120.00057 * 219.88378 * 9 7 2 23 23 C 1.53007 * 117.50011 * 3.67786 * 22 9 7 24 24 C 1.53001 * 117.49954 * 295.02053 * 22 9 7 25 25 H 0.97002 * 119.99697 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46836 * 209.99450 * 10 9 7 27 27 H 1.08994 * 109.46826 * 329.99785 * 10 9 7 28 28 H 1.09001 * 109.47262 * 305.10921 * 11 10 9 29 29 H 1.09001 * 109.47297 * 65.10857 * 11 10 9 30 30 H 1.09006 * 110.82346 * 332.95166 * 14 12 11 31 31 H 1.09003 * 110.82424 * 96.50263 * 14 12 11 32 32 H 1.08997 * 110.30681 * 145.26966 * 15 14 12 33 33 H 1.09000 * 110.30188 * 267.33040 * 15 14 12 34 34 H 1.07997 * 119.89509 * 359.97438 * 17 16 15 35 35 H 1.07997 * 120.03587 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.03699 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.88799 * 180.02562 * 20 19 18 38 38 H 1.09000 * 115.55229 * 149.35267 * 22 9 7 39 39 H 1.09003 * 117.49639 * 0.02562 * 23 22 9 40 40 H 1.08993 * 117.50108 * 145.01954 * 23 22 9 41 41 H 1.08998 * 117.50240 * 214.98152 * 24 22 9 42 42 H 1.09008 * 117.49898 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3859 2.1111 1.3941 5 1 1.5080 2.6178 -0.8088 6 1 3.5991 1.4105 -0.5852 7 6 2.0103 -1.2021 0.0005 8 1 1.5174 -2.1103 -0.3137 9 7 3.3198 -1.2365 0.3993 10 6 3.7588 -0.4319 1.5422 11 6 3.6125 -1.2490 2.8274 12 6 3.9494 -0.3688 4.0325 13 1 3.2950 0.5025 4.0585 14 6 5.4272 0.0730 3.9767 15 6 5.8219 0.0987 5.4687 16 6 4.8973 -0.8941 6.1401 17 6 4.9901 -1.5134 7.3754 18 6 4.0119 -2.3982 7.7846 19 6 2.9357 -2.6669 6.9592 20 6 2.8415 -2.0502 5.7271 21 6 3.8215 -1.1627 5.3150 22 6 4.2818 -2.0778 -0.3168 23 6 3.7817 -2.8272 -1.5535 24 6 4.0746 -3.5927 -0.2607 25 1 -0.4850 0.8401 -0.0004 26 1 4.8030 -0.1495 1.4080 27 1 3.1454 0.4664 1.6111 28 1 2.5871 -1.6081 2.9150 29 1 4.2938 -2.0993 2.7968 30 1 6.0283 -0.6532 3.4295 31 1 5.5187 1.0651 3.5346 32 1 6.8603 -0.2093 5.5906 33 1 5.6727 1.0961 5.8822 34 1 5.8307 -1.3044 8.0205 35 1 4.0874 -2.8798 8.7483 36 1 2.1696 -3.3582 7.2777 37 1 2.0003 -2.2603 5.0831 38 1 5.3079 -1.7105 -0.3317 39 1 2.7369 -2.6938 -1.8345 40 1 4.4788 -2.9531 -2.3818 41 1 4.9643 -4.2220 -0.2390 42 1 3.2226 -3.9634 0.3094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595301422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:57 Heat of formation + Delta-G solvation = 64.282314 kcal Electronic energy + Delta-G solvation = -20805.217417 eV Core-core repulsion = 17943.987190 eV Total energy + Delta-G solvation = -2861.230227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.08167 -37.36648 -35.96151 -33.77997 -32.17163 -31.11681 -29.45958 -28.56810 -25.85130 -24.02914 -22.56794 -22.13503 -21.42857 -20.75506 -19.71909 -19.64192 -16.63705 -16.14200 -15.47645 -15.24296 -15.00897 -14.96209 -14.67159 -13.89538 -13.42572 -13.22474 -12.98266 -12.63813 -12.52478 -12.35924 -12.10645 -11.83893 -11.49343 -11.27604 -11.05616 -10.85779 -10.76240 -10.68785 -10.60389 -10.39281 -10.20149 -9.95417 -9.57466 -9.56436 -9.22537 -8.67098 -8.48778 -8.35751 -6.67140 -6.00609 -3.46064 1.48701 1.53309 3.28522 3.44961 3.50784 3.89081 4.50085 4.55047 4.70172 4.82970 4.86416 5.09576 5.12632 5.18558 5.25330 5.32811 5.45513 5.63104 5.70351 5.75091 5.80122 5.84089 5.95741 5.97225 6.03005 6.05886 6.10553 6.23419 6.26352 6.32588 6.41997 6.43345 6.49143 6.53138 6.59842 6.67973 6.81581 6.91194 6.93339 7.08192 7.12746 7.14915 8.05965 8.39637 8.99385 9.69829 10.11121 11.14321 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.005546 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.178298 B = 5047.479496 C = 5366.791249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.039 3.961 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.142 3.858 11 C -0.120 4.120 12 C -0.055 4.055 13 H 0.084 0.916 14 C -0.116 4.116 15 C -0.081 4.081 16 C -0.102 4.102 17 C -0.113 4.113 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.102 4.102 21 C -0.076 4.076 22 C 0.122 3.878 23 C -0.188 4.188 24 C -0.222 4.222 25 H 0.263 0.737 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.022 -1.958 11.694 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.162 4.162 3 Si 0.710 3.290 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.096 0.904 9 N -0.294 5.294 10 C 0.017 3.983 11 C -0.160 4.160 12 C -0.073 4.073 13 H 0.102 0.898 14 C -0.154 4.154 15 C -0.118 4.118 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.076 4.076 22 C 0.013 3.987 23 C -0.226 4.226 24 C -0.263 4.263 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.846 -1.818 11.669 16.034 hybrid contribution 0.243 0.809 0.080 0.848 sum 11.088 -1.009 11.748 16.186 Atomic orbital electron populations 1.69837 1.05966 1.26734 1.51594 1.25485 0.95065 0.97794 0.97829 0.86867 0.80678 0.84488 0.76935 1.21292 1.23009 1.19308 1.18641 0.84632 0.94046 1.42138 0.90376 1.43665 1.06054 1.50571 1.29124 1.21155 0.97046 0.93764 0.86304 1.22128 1.02359 0.98135 0.93402 1.20811 0.96639 0.97764 0.92117 0.89801 1.22407 0.95841 1.01943 0.95161 1.21053 0.98028 0.97501 0.95217 1.20639 0.97026 0.98091 0.94484 1.20548 0.99258 0.97805 0.95491 1.20955 0.94925 0.99112 0.99679 1.21028 0.98364 1.00274 0.94384 1.20770 0.98784 0.96288 0.96203 1.20696 0.94357 0.96315 0.96208 1.21066 0.92785 0.88344 0.96491 1.23082 1.02914 1.05616 0.90989 1.23390 1.02197 0.98291 1.02404 0.92675 0.94209 0.92984 0.91092 0.92572 0.90660 0.90719 0.91106 0.90575 0.86761 0.86364 0.86162 0.85871 0.89643 0.87793 0.90535 0.90832 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.97 55.49 0.78 -26.34 16 2 C 0.04 1.10 5.34 -17.43 -0.09 1.01 16 3 Si 0.88 22.01 24.96 -169.99 -4.24 17.77 16 4 H -0.28 -6.86 6.71 56.52 0.38 -6.49 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.27 -7.26 8.76 -15.06 -0.13 -7.39 16 8 H 0.08 2.33 7.21 -52.49 -0.38 1.95 16 9 N -0.58 -13.44 2.38 -165.66 -0.39 -13.83 16 10 C 0.14 2.98 4.25 -4.04 -0.02 2.97 16 11 C -0.12 -2.25 4.80 -26.74 -0.13 -2.37 16 12 C -0.05 -0.88 2.94 -90.74 -0.27 -1.14 16 13 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 14 C -0.12 -1.56 5.67 -25.32 -0.14 -1.70 16 15 C -0.08 -0.97 6.77 -26.85 -0.18 -1.15 16 16 C -0.10 -1.41 6.14 -104.20 -0.64 -2.05 16 17 C -0.11 -1.39 10.04 -39.53 -0.40 -1.79 16 18 C -0.13 -1.53 10.05 -39.62 -0.40 -1.93 16 19 C -0.12 -1.58 10.05 -39.62 -0.40 -1.98 16 20 C -0.10 -1.54 9.74 -39.54 -0.39 -1.92 16 21 C -0.08 -1.17 5.61 -104.21 -0.58 -1.75 16 22 C 0.12 2.48 6.56 -67.93 -0.45 2.03 16 23 C -0.19 -3.64 9.79 -26.69 -0.26 -3.90 16 24 C -0.22 -4.14 10.35 -26.69 -0.28 -4.42 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.04 0.75 7.49 -51.93 -0.39 0.36 16 27 H 0.05 1.20 3.37 -51.93 -0.17 1.02 16 28 H 0.07 1.49 7.86 -51.93 -0.41 1.08 16 29 H 0.06 1.03 8.11 -51.93 -0.42 0.60 16 30 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.87 7.83 -52.48 -0.41 1.46 16 38 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.10 2.28 6.63 -51.93 -0.34 1.94 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -29.72 333.10 -10.34 -40.06 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.75 Total: 4.80 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -4.75 Total: -27.48 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.38 Total: -40.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.24 Total: 17.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.72 -10.34 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.342 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds