Wall clock time and date at job start Mon Mar 30 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48504 * 109.47377 * 84.70911 * 3 2 1 5 5 H 1.48496 * 109.47266 * 324.70914 * 3 2 1 6 6 H 1.48499 * 109.47300 * 204.70796 * 3 2 1 7 7 C 1.38814 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99196 * 19.65788 * 7 2 1 9 9 N 1.36929 * 120.00265 * 199.65176 * 7 2 1 10 10 C 1.46500 * 119.99992 * 39.88538 * 9 7 2 11 11 C 1.52996 * 109.47092 * 89.99797 * 10 9 7 12 12 C 1.52995 * 109.47059 * 185.10580 * 11 10 9 13 13 H 1.08996 * 110.26811 * 58.27998 * 12 11 10 14 14 C 1.54342 * 110.30578 * 296.20323 * 12 11 10 15 15 C 1.54348 * 102.39631 * 214.73018 * 14 12 11 16 16 C 1.51370 * 105.16661 * 26.34429 * 15 14 12 17 17 C 1.38501 * 130.38968 * 162.81338 * 16 15 14 18 18 C 1.38102 * 120.21663 * 180.02562 * 17 16 15 19 19 C 1.38258 * 119.93345 * 359.97438 * 18 17 16 20 20 C 1.38104 * 119.93253 * 0.02562 * 19 18 17 21 21 C 1.38215 * 109.76052 * 342.81587 * 16 15 14 22 22 C 1.46501 * 120.00057 * 219.88378 * 9 7 2 23 23 C 1.53007 * 117.50011 * 3.67786 * 22 9 7 24 24 C 1.53001 * 117.49954 * 295.02053 * 22 9 7 25 25 H 0.97002 * 119.99697 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46836 * 209.99450 * 10 9 7 27 27 H 1.08994 * 109.46826 * 329.99785 * 10 9 7 28 28 H 1.09001 * 109.47262 * 305.10921 * 11 10 9 29 29 H 1.09001 * 109.47297 * 65.10857 * 11 10 9 30 30 H 1.09006 * 110.82346 * 332.95166 * 14 12 11 31 31 H 1.09003 * 110.82424 * 96.50263 * 14 12 11 32 32 H 1.08997 * 110.30681 * 145.26966 * 15 14 12 33 33 H 1.09000 * 110.30188 * 267.33040 * 15 14 12 34 34 H 1.07997 * 119.89509 * 359.97438 * 17 16 15 35 35 H 1.07997 * 120.03587 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.03699 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.88799 * 180.02562 * 20 19 18 38 38 H 1.09000 * 115.55229 * 149.35267 * 22 9 7 39 39 H 1.09003 * 117.49639 * 0.02562 * 23 22 9 40 40 H 1.08993 * 117.50108 * 145.01954 * 23 22 9 41 41 H 1.08998 * 117.50240 * 214.98152 * 24 22 9 42 42 H 1.09008 * 117.49898 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3859 2.1111 1.3941 5 1 1.5080 2.6178 -0.8088 6 1 3.5991 1.4105 -0.5852 7 6 2.0103 -1.2021 0.0005 8 1 1.5174 -2.1103 -0.3137 9 7 3.3198 -1.2365 0.3993 10 6 3.7588 -0.4319 1.5422 11 6 3.6125 -1.2490 2.8274 12 6 3.9494 -0.3688 4.0325 13 1 3.2950 0.5025 4.0585 14 6 5.4272 0.0730 3.9767 15 6 5.8219 0.0987 5.4687 16 6 4.8973 -0.8941 6.1401 17 6 4.9901 -1.5134 7.3754 18 6 4.0119 -2.3982 7.7846 19 6 2.9357 -2.6669 6.9592 20 6 2.8415 -2.0502 5.7271 21 6 3.8215 -1.1627 5.3150 22 6 4.2818 -2.0778 -0.3168 23 6 3.7817 -2.8272 -1.5535 24 6 4.0746 -3.5927 -0.2607 25 1 -0.4850 0.8401 -0.0004 26 1 4.8030 -0.1495 1.4080 27 1 3.1454 0.4664 1.6111 28 1 2.5871 -1.6081 2.9150 29 1 4.2938 -2.0993 2.7968 30 1 6.0283 -0.6532 3.4295 31 1 5.5187 1.0651 3.5346 32 1 6.8603 -0.2093 5.5906 33 1 5.6727 1.0961 5.8822 34 1 5.8307 -1.3044 8.0205 35 1 4.0874 -2.8798 8.7483 36 1 2.1696 -3.3582 7.2777 37 1 2.0003 -2.2603 5.0831 38 1 5.3079 -1.7105 -0.3317 39 1 2.7369 -2.6938 -1.8345 40 1 4.4788 -2.9531 -2.3818 41 1 4.9643 -4.2220 -0.2390 42 1 3.2226 -3.9634 0.3094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595301422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:57 Heat of formation + Delta-G solvation = 50.022552 kcal Electronic energy + Delta-G solvation = -20805.835766 eV Core-core repulsion = 17943.987190 eV Total energy + Delta-G solvation = -2861.848576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14872 -39.03858 -37.13139 -35.41529 -33.89842 -32.58038 -30.84014 -29.60948 -27.39409 -25.82557 -23.73710 -23.45663 -22.98763 -21.77979 -21.51533 -20.88200 -18.44474 -17.46207 -17.24902 -16.82690 -16.26109 -16.06090 -15.76003 -15.46291 -14.90053 -14.59736 -14.49370 -14.14019 -13.95688 -13.60707 -13.54158 -13.30754 -12.82008 -12.73775 -12.71480 -12.35317 -12.18733 -12.03866 -11.87955 -11.78354 -11.66900 -11.53160 -11.31439 -11.24221 -10.89100 -10.59029 -9.70245 -9.39663 -8.58076 -8.20134 -5.62538 0.47423 0.49635 1.28404 1.39354 1.51203 2.40719 2.85857 3.01167 3.17896 3.36350 3.53440 3.65187 4.01180 4.11433 4.20258 4.22428 4.26347 4.32567 4.38257 4.42040 4.46188 4.60810 4.64044 4.68402 4.76117 4.82894 4.86001 4.92487 4.95483 5.02649 5.08693 5.18960 5.23089 5.30493 5.33608 5.41589 5.47012 5.52119 5.60128 5.64396 5.80690 5.94036 6.15293 6.18125 7.00439 7.63738 8.04582 8.98998 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.005546 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.178298 B = 5047.479496 C = 5366.791249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.020 4.020 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.310 1.310 6 H -0.253 1.253 7 C -0.248 4.248 8 H 0.035 0.965 9 N -0.589 5.589 10 C 0.139 3.861 11 C -0.103 4.103 12 C -0.054 4.054 13 H 0.065 0.935 14 C -0.113 4.113 15 C -0.075 4.075 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.105 4.105 22 C 0.104 3.896 23 C -0.189 4.189 24 C -0.206 4.206 25 H 0.262 0.738 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.138 -1.583 13.392 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.216 4.216 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.239 1.239 6 H -0.177 1.177 7 C -0.378 4.378 8 H 0.053 0.947 9 N -0.309 5.309 10 C 0.015 3.985 11 C -0.143 4.143 12 C -0.073 4.073 13 H 0.083 0.917 14 C -0.150 4.150 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.131 4.131 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.105 4.105 22 C -0.004 4.004 23 C -0.227 4.227 24 C -0.246 4.246 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.004 -1.462 13.376 20.154 hybrid contribution -1.073 0.513 -0.401 1.255 sum 13.931 -0.949 12.975 19.061 Atomic orbital electron populations 1.69979 1.07760 1.27382 1.54477 1.26114 0.95652 1.01326 0.98503 0.85809 0.79598 0.79863 0.77378 1.19952 1.23921 1.17702 1.18420 0.86496 0.92452 1.40448 0.94710 1.43776 1.05190 1.51451 1.30514 1.21270 0.98183 0.92869 0.86221 1.21870 0.99912 0.98418 0.94066 1.20752 0.98592 0.96632 0.91324 0.91653 1.22418 0.93308 1.02473 0.96836 1.21069 0.98796 0.97711 0.93574 1.20946 0.96542 0.98392 0.94876 1.20954 1.00074 0.96931 0.95181 1.21373 0.93848 0.98417 1.00504 1.21282 0.99505 1.00282 0.93646 1.20837 0.98732 0.97816 0.97360 1.20742 0.95724 0.97404 0.96664 1.21449 0.93503 0.88627 0.96797 1.23071 1.01630 1.05765 0.92233 1.23331 1.02487 0.97695 1.01075 0.92898 0.90932 0.95066 0.95243 0.92182 0.90168 0.89649 0.88700 0.89315 0.83666 0.83125 0.84490 0.88073 0.86094 0.91556 0.86939 0.86997 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.46 13.97 21.65 0.30 -60.16 16 2 C -0.02 -1.17 5.34 84.86 0.45 -0.72 16 3 Si 0.95 46.43 24.96 68.60 1.71 48.14 16 4 H -0.27 -12.69 6.71 99.48 0.67 -12.02 16 5 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 6 H -0.25 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.25 -14.19 8.76 84.04 0.74 -13.45 16 8 H 0.04 2.25 7.21 -2.91 -0.02 2.23 16 9 N -0.59 -27.66 2.38 -678.03 -1.61 -29.28 16 10 C 0.14 5.72 4.25 86.38 0.37 6.09 16 11 C -0.10 -3.92 4.80 30.59 0.15 -3.77 16 12 C -0.05 -1.73 2.94 -10.87 -0.03 -1.76 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.11 -2.73 5.67 31.51 0.18 -2.55 16 15 C -0.07 -1.52 6.77 30.52 0.21 -1.31 16 16 C -0.11 -2.69 6.14 -19.59 -0.12 -2.81 16 17 C -0.11 -2.39 10.04 22.30 0.22 -2.17 16 18 C -0.12 -2.57 10.05 22.24 0.22 -2.34 16 19 C -0.13 -3.22 10.05 22.24 0.22 -3.00 16 20 C -0.13 -4.02 9.74 22.30 0.22 -3.81 16 21 C -0.11 -3.24 5.61 -19.60 -0.11 -3.35 16 22 C 0.10 4.03 6.56 44.99 0.30 4.33 16 23 C -0.19 -7.16 9.79 30.62 0.30 -6.86 16 24 C -0.21 -7.40 10.35 30.62 0.32 -7.09 16 25 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.07 2.52 7.49 -2.38 -0.02 2.50 16 27 H 0.03 1.43 3.37 -2.39 -0.01 1.42 16 28 H 0.03 1.32 7.86 -2.39 -0.02 1.30 16 29 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 30 H 0.08 1.86 7.89 -2.38 -0.02 1.84 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.10 3.43 7.83 -2.91 -0.02 3.41 16 38 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 39 H 0.07 3.03 6.63 -2.39 -0.02 3.01 16 40 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -68.67 333.10 4.97 -63.70 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.94 Total: 22.17 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 3.63 Total: -44.57 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -1.31 Total: -89.44 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.71 Total: 48.14 kcal Total: -68.67 4.97 -63.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.721 kcal (2) G-P(sol) polarization free energy of solvation -68.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds