Wall clock time and date at job start Mon Mar 30 2020 01:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48496 * 109.47083 * 274.73232 * 3 2 1 5 5 H 1.48506 * 109.46974 * 34.72902 * 3 2 1 6 6 H 1.48498 * 109.47325 * 154.73149 * 3 2 1 7 7 C 1.39949 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00208 * 158.48586 * 7 2 1 9 9 C 1.41398 * 119.99347 * 338.48509 * 7 2 1 10 10 C 1.40721 * 120.23922 * 158.07300 * 9 7 2 11 11 C 1.37613 * 119.74539 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24618 * 359.97379 * 11 10 9 13 13 C 1.50702 * 119.74730 * 180.02562 * 12 11 10 14 14 N 1.46899 * 109.47059 * 93.97970 * 13 12 11 15 15 C 1.48139 * 111.00093 * 291.33110 * 14 13 12 16 16 C 1.53321 * 85.47574 * 221.43955 * 15 14 13 17 17 H 1.09000 * 111.42156 * 273.85278 * 16 15 14 18 18 C 1.50411 * 115.80304 * 145.35372 * 16 15 14 19 19 C 1.51627 * 114.50189 * 289.85816 * 18 16 15 20 20 C 1.52621 * 110.99880 * 313.28280 * 19 18 16 21 21 C 1.52975 * 108.75799 * 63.96907 * 20 19 18 22 22 C 1.48890 * 111.08591 * 192.41939 * 14 13 12 23 23 H 1.09003 * 115.14147 * 253.43968 * 22 14 13 24 24 C 1.38630 * 120.50163 * 0.29970 * 12 11 10 25 25 C 1.37617 * 120.24934 * 359.44631 * 24 12 11 26 26 H 0.97001 * 120.00079 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.12607 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.88069 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47240 * 333.97672 * 13 12 11 30 30 H 1.09003 * 109.46694 * 213.97985 * 13 12 11 31 31 H 1.09006 * 113.89220 * 107.27092 * 15 14 13 32 32 H 1.09001 * 113.89837 * 335.60819 * 15 14 13 33 33 H 1.08998 * 108.47909 * 51.16021 * 18 16 15 34 34 H 1.09007 * 108.47820 * 168.72153 * 18 16 15 35 35 H 1.08994 * 109.17054 * 73.67841 * 19 18 16 36 36 H 1.08996 * 109.17037 * 192.89106 * 19 18 16 37 37 H 1.09000 * 109.58859 * 183.75536 * 20 19 18 38 38 H 1.09004 * 109.59110 * 304.19119 * 20 19 18 39 39 H 1.09008 * 109.50126 * 56.19496 * 21 20 19 40 40 H 1.09007 * 109.50330 * 176.27140 * 21 20 19 41 41 H 1.08008 * 119.87823 * 179.70262 * 24 12 11 42 42 H 1.08005 * 120.13003 * 180.27225 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3897 2.1042 -1.3953 5 1 1.4932 2.6218 0.7977 6 1 3.5862 1.4134 0.5976 7 6 2.0080 -1.2119 -0.0005 8 1 3.0315 -1.2444 -0.3436 9 6 1.3748 -2.3940 0.4481 10 6 1.8559 -3.6530 0.0435 11 6 1.2316 -4.7968 0.4858 12 6 0.1330 -4.7120 1.3272 13 6 -0.5417 -5.9719 1.8052 14 7 0.0143 -6.3610 3.1081 15 6 1.4197 -6.8093 2.9731 16 6 1.0352 -7.9138 3.9645 17 1 1.1372 -7.5761 4.9959 18 6 1.7073 -9.2432 3.7566 19 6 1.2528 -9.9908 2.5182 20 6 -0.2695 -9.9944 2.4095 21 6 -0.7531 -8.5544 2.2285 22 6 -0.4005 -7.7427 3.4764 23 1 -1.1531 -7.8064 4.2623 24 6 -0.3529 -3.4770 1.7276 25 6 0.2588 -2.3201 1.3019 26 1 -0.4850 0.8400 0.0004 27 1 2.7113 -3.7212 -0.6123 28 1 1.5988 -5.7642 0.1763 29 1 -0.3714 -6.7714 1.0841 30 1 -1.6126 -5.7949 1.9053 31 1 2.1490 -6.0995 3.3637 32 1 1.6724 -7.1770 1.9786 33 1 2.7826 -9.0794 3.6861 34 1 1.5109 -9.8695 4.6270 35 1 1.6737 -9.5100 1.6353 36 1 1.6104 -11.0191 2.5695 37 1 -0.5731 -10.5926 1.5504 38 1 -0.7000 -10.4127 3.3193 39 1 -0.2666 -8.1138 1.3582 40 1 -1.8334 -8.5489 2.0832 41 1 -1.2124 -3.4226 2.3795 42 1 -0.1188 -1.3590 1.6185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595566674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:45 Heat of formation + Delta-G solvation = 44.928774 kcal Electronic energy + Delta-G solvation = -20677.522872 eV Core-core repulsion = 17815.453413 eV Total energy + Delta-G solvation = -2862.069459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99328 -37.48515 -35.15322 -33.73249 -31.96505 -30.58888 -29.24175 -28.11088 -26.29653 -25.15310 -23.62919 -22.01460 -20.97240 -20.83008 -19.56025 -17.71869 -17.26830 -16.24918 -15.51380 -15.25105 -15.07744 -14.51167 -14.11989 -13.86299 -13.63007 -13.27864 -12.94511 -12.52868 -12.40127 -12.03393 -11.94345 -11.83554 -11.55224 -11.43345 -11.09954 -11.06463 -10.92628 -10.76530 -10.48890 -10.39100 -10.31989 -9.96744 -9.81326 -9.49969 -9.34772 -9.04433 -8.22118 -7.39409 -7.28450 -6.77011 -4.30470 2.77586 3.07677 3.11609 3.12423 3.21982 3.94006 4.22842 4.50005 4.61128 4.69784 4.92710 5.02707 5.14462 5.22668 5.31670 5.50199 5.59369 5.63648 5.71722 5.77177 5.83410 5.87517 5.92896 5.97020 6.05128 6.10579 6.19349 6.24304 6.29798 6.34399 6.42425 6.49716 6.58298 6.82721 7.00255 7.09192 7.33096 7.40195 7.51624 7.65388 7.91873 8.08854 8.20355 8.33460 8.67858 8.92494 9.02200 10.17565 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042603 B = 0.003776 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.067012 B = 7413.073487 C = 7570.332884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.231 4.231 11 C -0.082 4.082 12 C -0.210 4.210 13 C 0.074 3.926 14 N -0.468 5.468 15 C 0.018 3.982 16 C -0.110 4.110 17 H 0.088 0.912 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.143 4.143 22 C 0.032 3.968 23 H 0.091 0.909 24 C -0.079 4.079 25 C -0.172 4.172 26 H 0.280 0.720 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -14.380 5.155 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.250 4.250 11 C -0.101 4.101 12 C -0.212 4.212 13 C -0.053 4.053 14 N -0.190 5.190 15 C -0.111 4.111 16 C -0.128 4.128 17 H 0.106 0.894 18 C -0.144 4.144 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.181 4.181 22 C -0.077 4.077 23 H 0.109 0.891 24 C -0.098 4.098 25 C -0.191 4.191 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.417 -13.631 5.562 14.728 hybrid contribution 0.422 0.291 -0.688 0.858 sum 0.005 -13.340 4.874 14.202 Atomic orbital electron populations 1.69852 1.07704 1.29249 1.34444 1.25912 0.94614 1.01329 0.92113 0.86382 0.80965 0.80852 0.79031 1.19597 1.19995 1.18377 1.19587 0.99610 0.91882 1.38273 0.90508 1.17597 0.90890 0.91872 0.88652 1.20884 1.04202 0.92764 1.07163 1.20315 0.95741 0.96071 0.97979 1.18832 1.01801 0.92805 1.07733 1.21461 0.98366 0.95525 0.89900 1.69145 1.03549 1.19195 1.27099 1.23708 0.93431 0.95798 0.98140 1.22055 0.95398 0.94878 1.00509 0.89411 1.20563 1.00173 0.95689 0.97995 1.21163 0.96026 0.99832 0.98479 1.21348 0.95777 0.96483 1.01491 1.22100 1.01439 0.95573 0.99000 1.23300 0.96877 0.90472 0.97101 0.89065 1.20483 0.98303 0.92513 0.98486 1.21285 0.99772 0.96923 1.01115 0.90877 0.89280 0.90174 0.93611 0.91805 0.89957 0.91630 0.91857 0.92510 0.92245 0.92164 0.92117 0.92022 0.89933 0.91573 0.89610 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.62 11.02 55.55 0.61 -20.01 16 2 C 0.08 2.00 5.08 -17.34 -0.09 1.92 16 3 Si 0.90 18.81 29.61 -169.99 -5.03 13.78 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.54 9.04 -37.74 -0.34 -12.88 16 8 H 0.08 2.00 7.93 -52.49 -0.42 1.58 16 9 C 0.11 3.06 5.59 -106.82 -0.60 2.46 16 10 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 11 C -0.08 -1.86 8.99 -39.66 -0.36 -2.21 16 12 C -0.21 -4.65 5.04 -104.33 -0.53 -5.18 16 13 C 0.07 1.35 4.48 -4.98 -0.02 1.32 16 14 N -0.47 -7.83 6.29 -238.97 -1.50 -9.33 16 15 C 0.02 0.28 6.22 -2.99 -0.02 0.26 16 16 C -0.11 -1.36 3.82 -92.12 -0.35 -1.71 16 17 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 18 C -0.11 -1.08 5.50 -28.72 -0.16 -1.24 16 19 C -0.12 -1.14 5.79 -27.62 -0.16 -1.30 16 20 C -0.11 -1.10 5.90 -26.94 -0.16 -1.26 16 21 C -0.14 -1.69 4.50 -26.75 -0.12 -1.81 16 22 C 0.03 0.42 4.74 -66.83 -0.32 0.10 16 23 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 24 C -0.08 -1.91 9.68 -39.66 -0.38 -2.29 16 25 C -0.17 -4.58 8.73 -38.87 -0.34 -4.91 16 26 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 27 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 28 H 0.08 1.60 7.67 -52.49 -0.40 1.20 16 29 H 0.05 0.77 4.70 -51.93 -0.24 0.53 16 30 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.01 6.78 -51.93 -0.35 0.66 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.63 7.98 -51.93 -0.41 0.21 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.10 4.66 -51.92 -0.24 0.86 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 42 H 0.12 3.18 6.11 -52.48 -0.32 2.85 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -27.44 322.76 -11.98 -39.42 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.60 Total: 6.16 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: -4.32 Total: -34.89 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: -0.89 Total: -29.34 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.44 -11.98 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595566674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.352 kcal (2) G-P(sol) polarization free energy of solvation -27.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds