Wall clock time and date at job start Mon Mar 30 2020 01:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48496 * 109.47083 * 274.73232 * 3 2 1 5 5 H 1.48506 * 109.46974 * 34.72902 * 3 2 1 6 6 H 1.48498 * 109.47325 * 154.73149 * 3 2 1 7 7 C 1.39949 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00208 * 158.48586 * 7 2 1 9 9 C 1.41398 * 119.99347 * 338.48509 * 7 2 1 10 10 C 1.40721 * 120.23922 * 158.07300 * 9 7 2 11 11 C 1.37613 * 119.74539 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24618 * 359.97379 * 11 10 9 13 13 C 1.50702 * 119.74730 * 180.02562 * 12 11 10 14 14 N 1.46899 * 109.47059 * 93.97970 * 13 12 11 15 15 C 1.48139 * 111.00093 * 291.33110 * 14 13 12 16 16 C 1.53321 * 85.47574 * 221.43955 * 15 14 13 17 17 H 1.09000 * 111.42156 * 273.85278 * 16 15 14 18 18 C 1.50411 * 115.80304 * 145.35372 * 16 15 14 19 19 C 1.51627 * 114.50189 * 289.85816 * 18 16 15 20 20 C 1.52621 * 110.99880 * 313.28280 * 19 18 16 21 21 C 1.52975 * 108.75799 * 63.96907 * 20 19 18 22 22 C 1.48890 * 111.08591 * 192.41939 * 14 13 12 23 23 H 1.09003 * 115.14147 * 253.43968 * 22 14 13 24 24 C 1.38630 * 120.50163 * 0.29970 * 12 11 10 25 25 C 1.37617 * 120.24934 * 359.44631 * 24 12 11 26 26 H 0.97001 * 120.00079 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.12607 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.88069 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47240 * 333.97672 * 13 12 11 30 30 H 1.09003 * 109.46694 * 213.97985 * 13 12 11 31 31 H 1.09006 * 113.89220 * 107.27092 * 15 14 13 32 32 H 1.09001 * 113.89837 * 335.60819 * 15 14 13 33 33 H 1.08998 * 108.47909 * 51.16021 * 18 16 15 34 34 H 1.09007 * 108.47820 * 168.72153 * 18 16 15 35 35 H 1.08994 * 109.17054 * 73.67841 * 19 18 16 36 36 H 1.08996 * 109.17037 * 192.89106 * 19 18 16 37 37 H 1.09000 * 109.58859 * 183.75536 * 20 19 18 38 38 H 1.09004 * 109.59110 * 304.19119 * 20 19 18 39 39 H 1.09008 * 109.50126 * 56.19496 * 21 20 19 40 40 H 1.09007 * 109.50330 * 176.27140 * 21 20 19 41 41 H 1.08008 * 119.87823 * 179.70262 * 24 12 11 42 42 H 1.08005 * 120.13003 * 180.27225 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3897 2.1042 -1.3953 5 1 1.4932 2.6218 0.7977 6 1 3.5862 1.4134 0.5976 7 6 2.0080 -1.2119 -0.0005 8 1 3.0315 -1.2444 -0.3436 9 6 1.3748 -2.3940 0.4481 10 6 1.8559 -3.6530 0.0435 11 6 1.2316 -4.7968 0.4858 12 6 0.1330 -4.7120 1.3272 13 6 -0.5417 -5.9719 1.8052 14 7 0.0143 -6.3610 3.1081 15 6 1.4197 -6.8093 2.9731 16 6 1.0352 -7.9138 3.9645 17 1 1.1372 -7.5761 4.9959 18 6 1.7073 -9.2432 3.7566 19 6 1.2528 -9.9908 2.5182 20 6 -0.2695 -9.9944 2.4095 21 6 -0.7531 -8.5544 2.2285 22 6 -0.4005 -7.7427 3.4764 23 1 -1.1531 -7.8064 4.2623 24 6 -0.3529 -3.4770 1.7276 25 6 0.2588 -2.3201 1.3019 26 1 -0.4850 0.8400 0.0004 27 1 2.7113 -3.7212 -0.6123 28 1 1.5988 -5.7642 0.1763 29 1 -0.3714 -6.7714 1.0841 30 1 -1.6126 -5.7949 1.9053 31 1 2.1490 -6.0995 3.3637 32 1 1.6724 -7.1770 1.9786 33 1 2.7826 -9.0794 3.6861 34 1 1.5109 -9.8695 4.6270 35 1 1.6737 -9.5100 1.6353 36 1 1.6104 -11.0191 2.5695 37 1 -0.5731 -10.5926 1.5504 38 1 -0.7000 -10.4127 3.3193 39 1 -0.2666 -8.1138 1.3582 40 1 -1.8334 -8.5489 2.0832 41 1 -1.2124 -3.4226 2.3795 42 1 -0.1188 -1.3590 1.6185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595566674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:45 Heat of formation + Delta-G solvation = 30.483274 kcal Electronic energy + Delta-G solvation = -20678.149276 eV Core-core repulsion = 17815.453413 eV Total energy + Delta-G solvation = -2862.695863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11707 -39.34080 -36.32347 -35.43816 -33.21222 -32.02644 -31.17163 -29.61633 -27.51609 -26.60485 -24.99315 -23.29265 -22.67305 -22.12391 -21.13881 -19.24175 -18.73409 -17.30391 -17.14027 -16.63386 -16.39779 -15.79899 -15.69597 -15.37884 -14.75757 -14.60667 -14.43973 -14.02265 -13.82601 -13.49982 -13.35079 -13.24695 -12.88541 -12.81057 -12.71579 -12.47271 -12.26667 -12.12295 -11.90258 -11.70617 -11.47103 -11.29634 -11.22715 -11.00517 -10.88857 -10.77706 -9.49250 -9.35148 -9.19074 -8.67535 -6.32138 0.95259 1.14411 1.36280 1.47275 1.54016 2.19300 2.66586 3.14163 3.50038 3.70090 3.79571 4.00833 4.11615 4.19964 4.24525 4.27734 4.34444 4.44915 4.48276 4.53665 4.67223 4.72391 4.77326 4.83697 4.95589 4.98846 5.06623 5.07008 5.13141 5.14631 5.22494 5.33881 5.36763 5.40775 5.43802 5.46164 5.55844 5.61122 5.70214 6.00066 6.09295 6.18324 6.33951 6.38126 6.70102 6.93341 7.04306 8.29916 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042603 B = 0.003776 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.067012 B = 7413.073487 C = 7570.332884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.247 4.247 11 C -0.080 4.080 12 C -0.199 4.199 13 C 0.081 3.919 14 N -0.494 5.494 15 C 0.012 3.988 16 C -0.094 4.094 17 H 0.086 0.914 18 C -0.104 4.104 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.140 4.140 22 C 0.037 3.963 23 H 0.099 0.901 24 C -0.089 4.089 25 C -0.196 4.196 26 H 0.289 0.711 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 -16.398 5.677 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.078 3.922 10 C -0.266 4.266 11 C -0.098 4.098 12 C -0.200 4.200 13 C -0.046 4.046 14 N -0.216 5.216 15 C -0.117 4.117 16 C -0.113 4.113 17 H 0.105 0.895 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.178 4.178 22 C -0.072 4.072 23 H 0.117 0.883 24 C -0.107 4.107 25 C -0.215 4.215 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.351 -15.672 6.084 16.815 hybrid contribution 0.343 0.776 -0.807 1.170 sum -0.008 -14.896 5.278 15.803 Atomic orbital electron populations 1.69897 1.09188 1.30660 1.34898 1.26779 0.95384 1.04605 0.91025 0.85236 0.79262 0.75961 0.79511 1.18459 1.18941 1.18320 1.19837 0.99893 0.93247 1.40370 0.90738 1.17936 0.91687 0.93064 0.89526 1.21113 1.04818 0.93018 1.07670 1.20607 0.95352 0.96612 0.97249 1.19286 1.00929 0.93863 1.05929 1.21390 0.97877 0.93965 0.91353 1.69085 1.04469 1.22072 1.25926 1.23707 0.92311 0.96582 0.99058 1.21963 0.94714 0.95196 0.99469 0.89522 1.20554 1.00034 0.94513 0.99113 1.21183 0.95998 1.00703 0.97620 1.21337 0.95723 0.94973 1.02591 1.22056 1.01697 0.96724 0.97339 1.23409 0.97572 0.88301 0.97897 0.88288 1.20705 0.98603 0.92785 0.98643 1.21239 1.00785 0.97056 1.02463 0.90068 0.88691 0.87175 0.91813 0.91778 0.92035 0.91600 0.91583 0.90778 0.93322 0.90281 0.90977 0.90892 0.91457 0.91035 0.88570 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.37 11.02 21.83 0.24 -44.13 16 2 C 0.04 1.96 5.08 85.26 0.43 2.39 16 3 Si 0.98 39.22 29.61 68.60 2.03 41.25 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -28.33 9.04 23.46 0.21 -28.12 16 8 H 0.07 4.04 7.93 -2.91 -0.02 4.01 16 9 C 0.08 4.54 5.59 -21.29 -0.12 4.42 16 10 C -0.25 -12.60 9.80 22.73 0.22 -12.38 16 11 C -0.08 -3.57 8.99 22.22 0.20 -3.37 16 12 C -0.20 -8.74 5.04 -19.67 -0.10 -8.84 16 13 C 0.08 2.83 4.48 85.56 0.38 3.22 16 14 N -0.49 -15.85 6.29 -909.96 -5.72 -21.57 16 15 C 0.01 0.37 6.22 86.16 0.54 0.90 16 16 C -0.09 -2.14 3.82 -11.60 -0.04 -2.18 16 17 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.10 -1.80 5.50 29.31 0.16 -1.64 16 19 C -0.12 -1.88 5.79 30.02 0.17 -1.71 16 20 C -0.11 -1.72 5.90 30.46 0.18 -1.54 16 21 C -0.14 -2.92 4.50 30.58 0.14 -2.78 16 22 C 0.04 0.88 4.74 44.38 0.21 1.09 16 23 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 24 C -0.09 -4.38 9.68 22.22 0.22 -4.16 16 25 C -0.20 -10.90 8.73 22.73 0.20 -10.70 16 26 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 27 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.11 4.22 7.67 -2.91 -0.02 4.20 16 29 H 0.06 2.02 4.70 -2.39 -0.01 2.01 16 30 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 1.93 6.78 -2.39 -0.02 1.92 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.05 0.89 7.98 -2.39 -0.02 0.87 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.62 4.66 -2.38 -0.01 1.61 16 40 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 41 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.10 5.63 6.11 -2.91 -0.02 5.62 16 Total: -1.00 -61.04 322.76 0.54 -60.50 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.99 Total: 29.34 kcal Atomic # 6 Polarization: -68.39 SS G_CDS: 3.00 Total: -65.39 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -5.48 Total: -65.70 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -61.04 0.54 -60.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595566674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.982 kcal (2) G-P(sol) polarization free energy of solvation -61.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds