Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86789 * 120.00167 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99640 * 3 2 1 5 5 H 1.48500 * 109.47262 * 29.99317 * 3 2 1 6 6 H 1.48505 * 109.47499 * 149.99579 * 3 2 1 7 7 C 1.37885 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00051 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.46890 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46703 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99769 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00301 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99902 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99873 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47035 * 179.97438 * 15 14 12 17 17 N 1.46896 * 109.47243 * 179.97438 * 16 15 14 18 18 C 1.47848 * 110.99790 * 290.84346 * 17 16 15 19 19 C 1.54910 * 104.79264 * 213.63553 * 18 17 16 20 20 C 1.55137 * 101.65409 * 37.07020 * 19 18 17 21 21 H 1.09000 * 110.70580 * 82.72694 * 20 19 18 22 22 O 1.42900 * 110.70416 * 205.96261 * 20 19 18 23 23 C 1.47442 * 111.00107 * 169.99731 * 17 16 15 24 24 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46550 * 60.00363 * 9 7 2 26 26 H 1.09000 * 109.46859 * 300.00246 * 9 7 2 27 27 H 1.08999 * 109.47498 * 60.00613 * 10 9 7 28 28 H 1.08992 * 109.47456 * 299.99928 * 10 9 7 29 29 H 0.96999 * 120.00180 * 0.02562 * 11 10 9 30 30 H 0.96999 * 120.00047 * 359.97438 * 14 12 11 31 31 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 32 32 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 33 33 H 1.09004 * 109.46930 * 299.99770 * 16 15 14 34 34 H 1.09004 * 109.47059 * 59.99372 * 16 15 14 35 35 H 1.09003 * 110.37476 * 332.46346 * 18 17 16 36 36 H 1.08998 * 110.37475 * 94.80877 * 18 17 16 37 37 H 1.09003 * 110.99148 * 278.97515 * 19 18 17 38 38 H 1.08998 * 111.02103 * 155.17619 * 19 18 17 39 39 H 0.96694 * 114.00292 * 293.59881 * 22 20 19 40 40 H 1.08996 * 109.89070 * 242.66189 * 23 17 16 41 41 H 1.09004 * 109.88699 * 3.85512 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4865 -2.6366 0.0009 12 6 6.1604 -3.8038 0.0014 13 8 5.5524 -4.8569 0.0013 14 7 7.5081 -3.8038 0.0018 15 6 8.2406 -5.0726 0.0017 16 6 9.7449 -4.7931 0.0017 17 7 10.4794 -6.0652 0.0022 18 6 10.3189 -6.7692 1.2924 19 6 11.6672 -7.4986 1.5154 20 6 12.6790 -6.4656 0.9534 21 1 12.9102 -5.7066 1.7007 22 8 13.8703 -7.1166 0.5070 23 6 11.9175 -5.8452 -0.2369 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 3.6586 -3.1503 -0.8893 28 1 3.6578 -3.1507 0.8906 29 1 5.9715 -1.7966 0.0014 30 1 7.9932 -2.9638 0.0015 31 1 7.9770 -5.6445 0.8915 32 1 7.9776 -5.6440 -0.8885 33 1 10.0082 -4.2215 -0.8883 34 1 10.0082 -4.2215 0.8917 35 1 10.1370 -6.0541 2.0948 36 1 9.5031 -7.4895 1.2327 37 1 11.7054 -8.4299 0.9504 38 1 11.8428 -7.6801 2.5757 39 1 14.3858 -7.5233 1.2168 40 1 12.2182 -6.3328 -1.1642 41 1 12.1248 -4.7765 -0.2932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602287560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = -79.073738 kcal Electronic energy + Delta-G solvation = -20134.530287 eV Core-core repulsion = 16856.234412 eV Total energy + Delta-G solvation = -3278.295875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98233 -39.43753 -36.78565 -35.25571 -34.49969 -32.79548 -31.74697 -30.11255 -29.20407 -27.40613 -24.74764 -23.08934 -21.64314 -21.15466 -20.78852 -20.59487 -18.23148 -18.01242 -16.89388 -16.47509 -15.91544 -15.79411 -15.12955 -14.81015 -14.52888 -14.34454 -14.14655 -13.85789 -13.64015 -13.35340 -13.29849 -12.79012 -12.59041 -12.22130 -12.03108 -11.69735 -11.48874 -11.44889 -11.25870 -11.16768 -10.47043 -10.37210 -10.25748 -9.97011 -9.76398 -9.31101 -9.06880 -8.81911 -8.61547 -8.36765 -6.09743 -4.09590 2.80630 3.25724 3.33099 3.34456 3.50026 3.54349 3.68760 4.12229 4.20265 4.38567 4.50688 4.59841 4.63230 4.75704 4.81862 4.99676 5.10068 5.13385 5.23071 5.29448 5.46550 5.57018 5.61912 5.70162 5.81570 6.10385 6.26882 6.41776 6.45677 6.59477 6.63804 6.83476 7.05111 7.09168 7.26272 7.30789 7.68883 8.30832 8.47423 8.92041 8.95730 9.50304 11.03313 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.052536 B = 0.002414 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.842137 B =11596.173484 C =11931.933237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.742 5.742 12 C 0.700 3.300 13 O -0.593 6.593 14 N -0.754 5.754 15 C 0.145 3.855 16 C 0.039 3.961 17 N -0.520 5.520 18 C 0.039 3.961 19 C -0.163 4.163 20 C 0.081 3.919 21 H 0.064 0.936 22 O -0.559 6.559 23 C 0.050 3.950 24 H 0.264 0.736 25 H 0.021 0.979 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.391 0.609 30 H 0.392 0.608 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.380 0.620 40 H 0.092 0.908 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.776 -9.865 3.384 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.396 5.396 12 C 0.400 3.600 13 O -0.471 6.471 14 N -0.412 5.412 15 C 0.020 3.980 16 C -0.089 4.089 17 N -0.246 5.246 18 C -0.088 4.088 19 C -0.201 4.201 20 C 0.021 3.979 21 H 0.082 0.918 22 O -0.364 6.364 23 C -0.078 4.078 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.224 0.776 30 H 0.225 0.775 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.228 0.772 40 H 0.110 0.890 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 27.578 -10.830 2.399 29.725 hybrid contribution 1.282 2.097 1.240 2.752 sum 28.859 -8.733 3.639 30.371 Atomic orbital electron populations 1.69907 1.06271 1.27014 1.50493 1.25010 0.94780 0.99151 0.94442 0.86737 0.80218 0.83537 0.78461 1.20253 1.21316 1.19137 1.20926 0.88653 0.94914 1.51514 0.90567 1.19795 0.97931 0.91453 0.96765 1.21377 0.74741 0.99818 1.01528 1.45519 1.08938 1.06198 1.78970 1.15986 0.81128 0.84854 0.78071 1.90914 1.67677 1.30576 1.57933 1.45021 1.05177 1.09014 1.81970 1.20961 0.88689 0.85340 1.03029 1.22509 0.93930 0.90856 1.01648 1.63494 1.08402 1.20319 1.32353 1.23082 0.98109 0.97834 0.89816 1.23437 0.95090 0.99930 1.01673 1.23055 0.85059 0.93742 0.96026 0.91817 1.86505 1.36724 1.74933 1.38281 1.22728 0.86212 0.99910 0.98921 0.92575 0.96058 0.96463 0.92129 0.92146 0.77616 0.77456 0.91834 0.90754 0.89866 0.93914 0.92929 0.89237 0.89459 0.90484 0.77218 0.88965 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.50 4.16 -27.89 -0.12 -0.61 16 10 C 0.15 3.09 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -12.49 5.56 -65.23 -0.36 -12.85 16 12 C 0.70 11.97 8.57 -86.92 -0.74 11.23 16 13 O -0.59 -12.79 16.34 5.28 0.09 -12.70 16 14 N -0.75 -9.07 5.56 -65.22 -0.36 -9.43 16 15 C 0.14 1.59 5.72 -4.04 -0.02 1.57 16 16 C 0.04 0.31 4.68 -3.83 -0.02 0.29 16 17 N -0.52 -4.32 5.16 -231.24 -1.19 -5.52 16 18 C 0.04 0.29 5.78 -2.29 -0.01 0.27 16 19 C -0.16 -0.96 6.80 -24.59 -0.17 -1.13 16 20 C 0.08 0.51 4.32 -24.91 -0.11 0.40 16 21 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 22 O -0.56 -3.70 13.39 -35.23 -0.47 -4.17 16 23 C 0.05 0.37 6.64 -2.83 -0.02 0.35 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 26 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.39 5.36 8.49 -40.82 -0.35 5.01 16 30 H 0.39 3.45 8.49 -40.82 -0.35 3.10 16 31 H 0.06 0.76 7.49 -51.93 -0.39 0.37 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 34 H 0.04 0.30 7.85 -51.93 -0.41 -0.11 16 35 H 0.05 0.36 7.62 -51.93 -0.40 -0.03 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.38 0.89 9.12 45.56 0.42 1.31 16 40 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 41 H 0.06 0.41 7.55 -51.93 -0.39 0.02 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -34.91 336.35 -8.80 -43.71 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.01 Total: 3.90 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.66 Total: 2.26 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -1.15 Total: -54.46 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.39 Total: -16.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.91 -8.80 -43.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602287560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.365 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds