Wall clock time and date at job start Mon Mar 30 2020 02:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.24106 * 2 1 4 4 C 1.50622 * 109.26856 * 119.49154 * 2 1 3 5 5 C 1.38732 * 118.43405 * 317.73836 * 4 2 1 6 6 C 1.38013 * 120.37440 * 180.43977 * 5 4 2 7 7 C 1.38263 * 119.87296 * 359.97438 * 6 5 4 8 8 C 1.38031 * 119.82470 * 359.92092 * 7 6 5 9 9 C 1.37834 * 121.83950 * 138.01907 * 4 2 1 10 10 C 1.50717 * 121.65838 * 359.22609 * 9 4 2 11 11 C 1.52895 * 109.95577 * 17.11142 * 10 9 4 12 12 N 1.46648 * 109.25894 * 240.48599 * 2 1 3 13 13 C 1.46900 * 110.99508 * 63.74344 * 12 2 1 14 14 C 1.53002 * 109.46960 * 59.68684 * 13 12 2 15 15 C 1.50700 * 115.54520 * 277.91203 * 14 13 12 16 16 H 1.08002 * 119.99894 * 144.12354 * 15 14 13 17 17 C 1.37888 * 120.00200 * 324.12430 * 15 14 13 18 18 N 1.31513 * 119.99456 * 340.69775 * 17 15 14 19 19 Si 1.86792 * 120.00119 * 160.69952 * 17 15 14 20 20 H 1.48499 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47502 * 119.99808 * 19 17 15 22 22 H 1.48501 * 109.47231 * 240.00345 * 19 17 15 23 23 C 1.52998 * 117.50253 * 132.20935 * 14 13 12 24 24 C 1.52994 * 117.50266 * 63.58169 * 14 13 12 25 25 H 1.09002 * 109.47421 * 307.92554 * 1 2 3 26 26 H 1.09001 * 109.47313 * 67.91530 * 1 2 3 27 27 H 1.09000 * 109.47264 * 187.92099 * 1 2 3 28 28 H 1.08001 * 119.81381 * 0.41947 * 5 4 2 29 29 H 1.07998 * 120.06523 * 180.02562 * 6 5 4 30 30 H 1.08006 * 120.08989 * 179.89781 * 7 6 5 31 31 H 1.08003 * 119.82487 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.39120 * 137.25724 * 10 9 4 33 33 H 1.09003 * 109.39249 * 256.96245 * 10 9 4 34 34 H 1.08996 * 109.63546 * 69.26622 * 11 10 9 35 35 H 1.09000 * 109.63238 * 189.65907 * 11 10 9 36 36 H 1.09007 * 109.46514 * 179.68052 * 13 12 2 37 37 H 1.08993 * 109.47378 * 299.67933 * 13 12 2 38 38 H 0.97006 * 119.99614 * 185.04868 * 18 17 15 39 39 H 1.09001 * 117.49276 * 359.97438 * 23 14 13 40 40 H 1.09001 * 117.49841 * 145.01397 * 23 14 13 41 41 H 1.09001 * 117.50056 * 214.97595 * 24 14 13 42 42 H 1.09002 * 117.49911 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8892 1.0291 0.0000 4 6 2.0270 -0.7000 1.2376 5 6 1.3927 -0.4395 2.4436 6 6 1.8210 -1.0518 3.6039 7 6 2.8879 -1.9305 3.5655 8 6 3.5187 -2.1924 2.3661 9 6 3.0887 -1.5782 1.1995 10 6 3.8023 -1.9012 -0.0882 11 6 3.4749 -0.8459 -1.1450 12 7 2.0137 -0.6820 -1.2048 13 6 1.6145 0.0450 -2.4172 14 6 2.1971 1.4592 -2.3789 15 6 1.4162 2.4620 -1.5692 16 1 1.9356 3.2246 -1.0077 17 6 0.0387 2.4060 -1.5451 18 7 -0.6095 1.7576 -2.4879 19 14 -0.9066 3.2512 -0.1735 20 1 0.0489 3.9071 0.7550 21 1 -1.8129 4.2742 -0.7542 22 1 -1.7072 2.2448 0.5690 23 6 2.9072 1.9651 -3.6362 24 6 3.7208 1.5963 -2.3940 25 1 -0.3634 0.6316 0.8106 26 1 -0.3634 0.3864 -0.9523 27 1 -0.3634 -1.0179 0.1416 28 1 0.5592 0.2466 2.4747 29 1 1.3233 -0.8457 4.5400 30 1 3.2270 -2.4104 4.4717 31 1 4.3523 -2.8785 2.3361 32 1 4.8778 -1.9155 0.0879 33 1 3.4822 -2.8807 -0.4435 34 1 3.9388 0.1019 -0.8722 35 1 3.8498 -1.1710 -2.1156 36 1 1.9909 -0.4794 -3.2957 37 1 0.5271 0.1011 -2.4658 38 1 -1.5790 1.7793 -2.5127 39 1 2.9597 1.2902 -4.4905 40 1 2.8096 3.0235 -3.8779 41 1 4.1585 2.4121 -1.8186 42 1 4.3083 0.6789 -2.4316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602777472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:19 Heat of formation + Delta-G solvation = 62.037238 kcal Electronic energy + Delta-G solvation = -22223.732395 eV Core-core repulsion = 19362.404814 eV Total energy + Delta-G solvation = -2861.327580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34690 -39.35542 -36.55163 -35.10501 -33.88773 -32.42351 -30.54737 -28.65011 -27.74911 -26.75423 -24.35035 -23.46885 -22.88434 -22.16206 -20.86447 -19.91110 -18.17389 -17.53354 -16.92284 -16.55520 -16.33921 -15.69127 -15.57973 -15.01615 -14.91626 -14.84888 -14.30350 -14.03567 -13.79107 -13.34511 -13.11405 -12.96121 -12.91781 -12.87850 -12.55517 -12.44638 -12.26965 -12.10080 -11.82955 -11.79046 -11.47242 -11.32593 -11.09202 -10.83636 -10.54092 -9.91085 -9.61876 -9.33341 -8.82012 -8.13756 -6.11300 0.55820 0.58044 1.31437 1.39782 1.45205 2.35673 2.89120 2.96523 3.29287 3.65249 3.91929 3.96746 4.14531 4.24964 4.30316 4.38294 4.50731 4.56213 4.61746 4.64958 4.73056 4.74740 4.80472 4.86304 4.90522 4.91816 4.99608 5.02405 5.18057 5.18754 5.23136 5.36102 5.40538 5.48167 5.55394 5.57342 5.66136 5.72090 5.74301 5.87400 6.05477 6.22196 6.36745 6.48736 6.62083 6.81116 7.40204 8.86210 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.008980 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.536968 B = 3117.119912 C = 4188.635130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.063 0.937 4 C -0.085 4.085 5 C -0.140 4.140 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.123 4.123 9 C -0.089 4.089 10 C -0.070 4.070 11 C 0.040 3.960 12 N -0.521 5.521 13 C 0.080 3.920 14 C 0.004 3.996 15 C -0.499 4.499 16 H 0.040 0.960 17 C 0.062 3.938 18 N -0.884 5.884 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.205 4.205 24 C -0.199 4.199 25 H 0.039 0.961 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.107 0.893 38 H 0.266 0.734 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -8.166 8.261 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.085 4.085 5 C -0.158 4.158 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.090 4.090 10 C -0.107 4.107 11 C -0.088 4.088 12 N -0.244 5.244 13 C -0.048 4.048 14 C 0.002 3.998 15 C -0.536 4.536 16 H 0.058 0.942 17 C -0.139 4.139 18 N -0.522 5.522 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.186 1.186 23 C -0.244 4.244 24 C -0.236 4.236 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.950 -8.748 8.216 13.395 hybrid contribution -0.469 1.911 0.308 1.991 sum 5.481 -6.838 8.524 12.225 Atomic orbital electron populations 1.22305 0.95293 0.99764 1.04058 1.20358 0.94919 0.96148 0.87028 0.91919 1.20035 0.96071 0.97439 0.94960 1.21230 1.00453 1.01173 0.92982 1.21296 0.97943 0.97610 0.97823 1.21374 0.96075 0.98488 0.98638 1.21372 1.00853 1.00155 0.91743 1.19882 0.95832 0.96746 0.96498 1.20589 0.99815 0.99235 0.91057 1.22509 0.89166 0.98016 0.99137 1.62752 1.11356 1.48235 1.02008 1.21939 1.04094 0.89036 0.89683 1.19744 0.88988 0.95408 0.95615 1.20566 0.91272 1.13590 1.28155 0.94180 1.25160 0.97759 0.94825 0.96173 1.69920 1.08418 1.42729 1.31165 0.86441 0.79558 0.78920 0.81796 1.19968 1.21289 1.18630 1.22930 1.09364 0.99598 0.92477 1.23201 0.96314 1.01886 1.02171 0.94256 0.88647 0.94249 0.87293 0.84219 0.83252 0.83691 0.88604 0.89925 0.94199 0.90423 0.93823 0.87515 0.92341 0.90517 0.92041 0.91679 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.89 6.64 71.98 0.48 -6.41 16 2 C 0.12 5.27 1.83 44.19 0.08 5.35 16 3 H 0.06 3.09 5.21 -2.39 -0.01 3.07 16 4 C -0.08 -3.16 5.47 -19.87 -0.11 -3.27 16 5 C -0.14 -4.79 9.08 22.33 0.20 -4.59 16 6 C -0.13 -3.50 10.05 22.22 0.22 -3.28 16 7 C -0.13 -3.05 10.05 22.23 0.22 -2.83 16 8 C -0.12 -3.16 9.66 22.33 0.22 -2.95 16 9 C -0.09 -2.85 5.77 -19.85 -0.11 -2.97 16 10 C -0.07 -2.00 5.94 29.82 0.18 -1.82 16 11 C 0.04 1.38 3.74 86.22 0.32 1.70 16 12 N -0.52 -21.41 4.65 -875.67 -4.08 -25.49 16 13 C 0.08 3.65 5.05 86.30 0.44 4.09 16 14 C 0.00 0.20 1.33 -52.93 -0.07 0.13 16 15 C -0.50 -26.15 6.41 25.60 0.16 -25.99 16 16 H 0.04 2.20 7.89 -2.91 -0.02 2.18 16 17 C 0.06 3.15 2.85 84.66 0.24 3.39 16 18 N -0.88 -46.31 9.89 21.45 0.21 -46.10 16 19 Si 0.91 41.30 27.19 68.60 1.87 43.17 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.26 -11.39 6.55 99.48 0.65 -10.74 16 23 C -0.20 -9.15 9.88 30.59 0.30 -8.84 16 24 C -0.20 -8.28 7.87 30.59 0.24 -8.04 16 25 H 0.04 1.67 4.92 -2.39 -0.01 1.66 16 26 H 0.10 4.59 2.82 -2.39 -0.01 4.58 16 27 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 28 H 0.11 3.81 6.58 -2.91 -0.02 3.79 16 29 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.50 5.43 -2.39 -0.01 1.48 16 35 H 0.08 2.49 7.36 -2.39 -0.02 2.47 16 36 H 0.04 1.90 7.83 -2.38 -0.02 1.88 16 37 H 0.11 5.45 3.97 -2.39 -0.01 5.44 16 38 H 0.27 13.36 8.32 -92.70 -0.77 12.59 16 39 H 0.08 3.18 8.07 -2.39 -0.02 3.16 16 40 H 0.06 2.85 8.14 -2.39 -0.02 2.84 16 41 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.10 3.73 5.29 -2.39 -0.01 3.72 16 Total: -1.00 -55.88 302.67 1.98 -53.90 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.96 Total: 30.85 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 3.01 Total: -56.33 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -3.86 Total: -71.59 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.87 Total: 43.17 kcal Total: -55.88 1.98 -53.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602777472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.935 kcal (2) G-P(sol) polarization free energy of solvation -55.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds