Wall clock time and date at job start Mon Mar 30 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.79116 * 2 1 4 4 C 1.52889 * 109.63015 * 120.48944 * 2 1 3 5 5 C 1.50719 * 109.95894 * 170.11363 * 4 2 1 6 6 C 1.38675 * 118.49262 * 163.30287 * 5 4 2 7 7 C 1.38029 * 120.35422 * 179.56290 * 6 5 4 8 8 C 1.38262 * 119.82272 * 0.03416 * 7 6 5 9 9 C 1.38019 * 119.87269 * 0.07791 * 8 7 6 10 10 C 1.37844 * 121.65810 * 343.03872 * 5 4 2 11 11 C 1.50623 * 121.84508 * 0.52746 * 10 5 4 12 12 N 1.46631 * 110.49683 * 342.42164 * 11 10 5 13 13 C 1.46904 * 110.99803 * 175.95266 * 12 11 10 14 14 C 1.53003 * 109.47025 * 77.37124 * 13 12 11 15 15 C 1.50703 * 115.55714 * 211.68236 * 14 13 12 16 16 H 1.08007 * 119.99136 * 118.87786 * 15 14 13 17 17 C 1.37876 * 120.00308 * 298.87562 * 15 14 13 18 18 N 1.31513 * 119.99928 * 182.94278 * 17 15 14 19 19 Si 1.86794 * 119.99723 * 2.94159 * 17 15 14 20 20 H 1.48502 * 109.47137 * 84.56093 * 19 17 15 21 21 H 1.48508 * 109.46804 * 204.55906 * 19 17 15 22 22 H 1.48494 * 109.47671 * 324.55867 * 19 17 15 23 23 C 1.52997 * 117.49691 * 66.00014 * 14 13 12 24 24 C 1.53002 * 117.50108 * 357.37662 * 14 13 12 25 25 H 1.09000 * 109.46928 * 170.97380 * 1 2 3 26 26 H 1.08998 * 109.46993 * 290.98063 * 1 2 3 27 27 H 1.08999 * 109.46764 * 50.98349 * 1 2 3 28 28 H 1.08997 * 109.39414 * 49.96683 * 4 2 1 29 29 H 1.08998 * 109.38984 * 290.25976 * 4 2 1 30 30 H 1.08001 * 119.82175 * 359.55987 * 6 5 4 31 31 H 1.07994 * 120.08849 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.06449 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.80871 * 179.97438 * 9 8 7 34 34 H 1.09005 * 109.26316 * 222.15904 * 11 10 5 35 35 H 1.08997 * 109.26891 * 102.68606 * 11 10 5 36 36 H 1.08992 * 109.46811 * 317.37043 * 13 12 11 37 37 H 1.08996 * 109.46922 * 197.36839 * 13 12 11 38 38 H 0.96991 * 119.99862 * 179.97438 * 18 17 15 39 39 H 1.09008 * 117.49714 * 145.02264 * 23 14 13 40 40 H 1.08999 * 117.50507 * 359.97438 * 23 14 13 41 41 H 1.08998 * 117.49639 * 0.02562 * 24 14 13 42 42 H 1.08997 * 117.49707 * 214.98071 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0436 -0.7306 1.2409 5 6 3.5310 -0.9482 1.1310 6 6 4.2393 -1.2685 2.2794 7 6 5.6013 -1.4848 2.2213 8 6 6.2631 -1.3808 1.0118 9 6 5.5595 -1.0598 -0.1314 10 6 4.1907 -0.8415 -0.0746 11 6 3.4670 -0.4904 -1.3481 12 7 2.0244 -0.7033 -1.1943 13 6 1.2978 -0.2739 -2.3967 14 6 1.4510 -1.3327 -3.4905 15 6 1.4555 -0.8110 -4.9044 16 1 2.3208 -0.9621 -5.5329 17 6 0.3551 -0.1410 -5.3955 18 7 0.3359 0.2634 -6.6467 19 14 -1.1084 0.1922 -4.2836 20 1 -0.8662 1.4334 -3.5051 21 1 -2.3309 0.3571 -5.1106 22 1 -1.2918 -0.9489 -3.3513 23 6 0.8112 -2.7005 -3.2442 24 6 2.3321 -2.5450 -3.1819 25 1 -0.3633 -1.0150 -0.1612 26 1 -0.3633 0.3680 0.9595 27 1 -0.3633 0.6470 -0.7985 28 1 1.5424 -1.6947 1.3267 29 1 1.8299 -0.1331 2.1271 30 1 3.7225 -1.3492 3.2243 31 1 6.1487 -1.7344 3.1182 32 1 7.3286 -1.5496 0.9617 33 1 6.0775 -0.9784 -1.0756 34 1 3.8391 -1.1181 -2.1579 35 1 3.6525 0.5560 -1.5904 36 1 1.7057 0.6736 -2.7486 37 1 0.2418 -0.1486 -2.1577 38 1 -0.4383 0.7344 -6.9923 39 1 0.3937 -3.2231 -4.1049 40 1 0.2816 -2.8463 -2.3028 41 1 2.8022 -2.5883 -2.1995 42 1 2.9150 -2.9651 -4.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602778058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:49 Heat of formation + Delta-G solvation = 61.906696 kcal Electronic energy + Delta-G solvation = -21437.744155 eV Core-core repulsion = 18576.410914 eV Total energy + Delta-G solvation = -2861.333241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.15900 -37.98527 -35.85357 -32.85903 -32.06581 -31.78367 -30.21445 -27.14556 -26.49538 -25.35407 -23.30789 -22.11573 -21.58109 -21.03488 -19.21120 -18.59283 -16.66431 -16.46029 -15.58580 -15.36707 -15.06759 -14.55171 -14.37316 -13.88337 -13.56287 -13.40830 -13.07181 -12.73454 -12.66170 -12.41155 -11.96494 -11.88365 -11.72027 -11.65753 -11.41869 -11.05954 -10.84655 -10.71770 -10.62226 -10.32100 -10.03443 -9.92763 -9.43096 -8.92674 -8.72277 -8.60371 -8.44600 -8.23541 -7.80813 -6.09759 -4.09877 1.45042 1.45975 3.25037 3.36260 3.42104 3.82801 4.23444 4.42732 4.76188 4.81749 5.00783 5.02876 5.07416 5.13886 5.30275 5.41563 5.45287 5.53156 5.57901 5.71155 5.79936 5.84446 5.91678 5.99384 6.04290 6.06824 6.14335 6.22360 6.28325 6.34048 6.37035 6.50948 6.55082 6.59437 6.70919 6.77176 6.78116 6.98973 7.09037 7.19265 7.40110 7.51778 7.58659 7.87967 8.55889 8.94076 9.54058 11.02523 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.005884 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.795102 B = 4757.210061 C = 5313.968669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 H 0.041 0.959 4 C -0.068 4.068 5 C -0.068 4.068 6 C -0.124 4.124 7 C -0.128 4.128 8 C -0.126 4.126 9 C -0.116 4.116 10 C -0.067 4.067 11 C 0.085 3.915 12 N -0.522 5.522 13 C 0.071 3.929 14 C 0.002 3.998 15 C -0.482 4.482 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.900 5.900 19 Si 0.872 3.128 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.253 1.253 23 C -0.188 4.188 24 C -0.179 4.179 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -1.299 17.719 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.034 4.034 3 H 0.059 0.941 4 C -0.106 4.106 5 C -0.069 4.069 6 C -0.142 4.142 7 C -0.146 4.146 8 C -0.144 4.144 9 C -0.135 4.135 10 C -0.067 4.067 11 C -0.042 4.042 12 N -0.246 5.246 13 C -0.056 4.056 14 C 0.001 3.999 15 C -0.520 4.520 16 H 0.093 0.907 17 C -0.125 4.125 18 N -0.538 5.538 19 Si 0.700 3.300 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.177 1.177 23 C -0.225 4.225 24 C -0.216 4.216 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.665 -1.700 17.625 18.591 hybrid contribution -0.628 1.084 0.326 1.295 sum 5.037 -0.615 17.951 18.654 Atomic orbital electron populations 1.21991 0.94486 1.03033 1.01423 1.21638 0.95191 0.95404 0.91176 0.94107 1.20574 0.91376 1.01347 0.97265 1.19613 0.95671 0.99081 0.92494 1.21045 0.94329 1.01064 0.97733 1.21000 0.94567 1.01363 0.97685 1.21004 0.99606 1.00937 0.92822 1.21087 0.93628 1.00099 0.98678 1.19782 0.93594 0.98717 0.94601 1.21174 0.88098 1.00078 0.94840 1.62428 1.02605 1.56509 1.03069 1.22308 0.97484 0.97692 0.88084 1.19349 1.00884 0.85829 0.93884 1.20418 1.02556 1.35395 0.93652 0.90655 1.24935 0.98013 0.94847 0.94658 1.69889 1.30565 1.39144 1.14160 0.87032 0.82382 0.79415 0.81209 1.20555 1.22062 1.17685 1.22898 0.94918 1.04585 1.00144 1.22860 0.93080 1.04828 1.00821 0.91328 0.92303 0.92256 0.89897 0.90995 0.86513 0.86528 0.86374 0.86004 0.87746 0.93710 0.93894 0.91027 0.92599 0.90499 0.91394 0.89031 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.14 37.16 0.30 -1.87 16 2 C 0.07 1.12 2.60 -67.63 -0.18 0.94 16 3 H 0.04 0.63 8.05 -51.93 -0.42 0.21 16 4 C -0.07 -0.88 5.25 -27.93 -0.15 -1.03 16 5 C -0.07 -0.94 5.77 -104.60 -0.60 -1.54 16 6 C -0.12 -1.47 9.66 -39.50 -0.38 -1.85 16 7 C -0.13 -1.43 10.05 -39.65 -0.40 -1.83 16 8 C -0.13 -1.45 10.05 -39.65 -0.40 -1.85 16 9 C -0.12 -1.53 9.65 -39.48 -0.38 -1.91 16 10 C -0.07 -0.98 5.79 -104.62 -0.61 -1.59 16 11 C 0.09 1.42 4.32 -5.16 -0.02 1.40 16 12 N -0.52 -9.17 3.47 -228.22 -0.79 -9.96 16 13 C 0.07 1.48 3.38 -3.82 -0.01 1.47 16 14 C 0.00 0.04 1.29 -155.66 -0.20 -0.16 16 15 C -0.48 -13.41 9.38 -34.44 -0.32 -13.74 16 16 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 19 Si 0.87 21.33 24.66 -169.99 -4.19 17.14 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.25 -5.91 6.28 56.52 0.35 -5.55 16 23 C -0.19 -4.13 9.13 -26.73 -0.24 -4.37 16 24 C -0.18 -3.74 8.21 -26.73 -0.22 -3.96 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 28 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.10 1.83 5.71 -51.93 -0.30 1.53 16 35 H 0.05 0.76 7.97 -51.93 -0.41 0.34 16 36 H 0.04 0.95 7.74 -51.93 -0.40 0.55 16 37 H 0.07 1.50 2.59 -51.93 -0.13 1.37 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.09 1.79 5.53 -51.93 -0.29 1.50 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -29.64 320.41 -9.84 -39.48 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.55 Total: 4.80 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -3.91 Total: -29.77 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.02 Total: -36.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.19 Total: 17.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.64 -9.84 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602778058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.386 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds