Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.79116 * 2 1 4 4 C 1.52889 * 109.63015 * 120.48944 * 2 1 3 5 5 C 1.50719 * 109.95894 * 170.11363 * 4 2 1 6 6 C 1.38675 * 118.49262 * 163.30287 * 5 4 2 7 7 C 1.38029 * 120.35422 * 179.56290 * 6 5 4 8 8 C 1.38262 * 119.82272 * 0.03416 * 7 6 5 9 9 C 1.38019 * 119.87269 * 0.07791 * 8 7 6 10 10 C 1.37844 * 121.65810 * 343.03872 * 5 4 2 11 11 C 1.50623 * 121.84508 * 0.52746 * 10 5 4 12 12 N 1.46631 * 110.49683 * 342.42164 * 11 10 5 13 13 C 1.46904 * 110.99803 * 175.95266 * 12 11 10 14 14 C 1.53003 * 109.47025 * 77.37124 * 13 12 11 15 15 C 1.50703 * 115.55714 * 211.68236 * 14 13 12 16 16 H 1.08007 * 119.99136 * 118.87786 * 15 14 13 17 17 C 1.37876 * 120.00308 * 298.87562 * 15 14 13 18 18 N 1.31513 * 119.99928 * 182.94278 * 17 15 14 19 19 Si 1.86794 * 119.99723 * 2.94159 * 17 15 14 20 20 H 1.48502 * 109.47137 * 84.56093 * 19 17 15 21 21 H 1.48508 * 109.46804 * 204.55906 * 19 17 15 22 22 H 1.48494 * 109.47671 * 324.55867 * 19 17 15 23 23 C 1.52997 * 117.49691 * 66.00014 * 14 13 12 24 24 C 1.53002 * 117.50108 * 357.37662 * 14 13 12 25 25 H 1.09000 * 109.46928 * 170.97380 * 1 2 3 26 26 H 1.08998 * 109.46993 * 290.98063 * 1 2 3 27 27 H 1.08999 * 109.46764 * 50.98349 * 1 2 3 28 28 H 1.08997 * 109.39414 * 49.96683 * 4 2 1 29 29 H 1.08998 * 109.38984 * 290.25976 * 4 2 1 30 30 H 1.08001 * 119.82175 * 359.55987 * 6 5 4 31 31 H 1.07994 * 120.08849 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.06449 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.80871 * 179.97438 * 9 8 7 34 34 H 1.09005 * 109.26316 * 222.15904 * 11 10 5 35 35 H 1.08997 * 109.26891 * 102.68606 * 11 10 5 36 36 H 1.08992 * 109.46811 * 317.37043 * 13 12 11 37 37 H 1.08996 * 109.46922 * 197.36839 * 13 12 11 38 38 H 0.96991 * 119.99862 * 179.97438 * 18 17 15 39 39 H 1.09008 * 117.49714 * 145.02264 * 23 14 13 40 40 H 1.08999 * 117.50507 * 359.97438 * 23 14 13 41 41 H 1.08998 * 117.49639 * 0.02562 * 24 14 13 42 42 H 1.08997 * 117.49707 * 214.98071 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0436 -0.7306 1.2409 5 6 3.5310 -0.9482 1.1310 6 6 4.2393 -1.2685 2.2794 7 6 5.6013 -1.4848 2.2213 8 6 6.2631 -1.3808 1.0118 9 6 5.5595 -1.0598 -0.1314 10 6 4.1907 -0.8415 -0.0746 11 6 3.4670 -0.4904 -1.3481 12 7 2.0244 -0.7033 -1.1943 13 6 1.2978 -0.2739 -2.3967 14 6 1.4510 -1.3327 -3.4905 15 6 1.4555 -0.8110 -4.9044 16 1 2.3208 -0.9621 -5.5329 17 6 0.3551 -0.1410 -5.3955 18 7 0.3359 0.2634 -6.6467 19 14 -1.1084 0.1922 -4.2836 20 1 -0.8662 1.4334 -3.5051 21 1 -2.3309 0.3571 -5.1106 22 1 -1.2918 -0.9489 -3.3513 23 6 0.8112 -2.7005 -3.2442 24 6 2.3321 -2.5450 -3.1819 25 1 -0.3633 -1.0150 -0.1612 26 1 -0.3633 0.3680 0.9595 27 1 -0.3633 0.6470 -0.7985 28 1 1.5424 -1.6947 1.3267 29 1 1.8299 -0.1331 2.1271 30 1 3.7225 -1.3492 3.2243 31 1 6.1487 -1.7344 3.1182 32 1 7.3286 -1.5496 0.9617 33 1 6.0775 -0.9784 -1.0756 34 1 3.8391 -1.1181 -2.1579 35 1 3.6525 0.5560 -1.5904 36 1 1.7057 0.6736 -2.7486 37 1 0.2418 -0.1486 -2.1577 38 1 -0.4383 0.7344 -6.9923 39 1 0.3937 -3.2231 -4.1049 40 1 0.2816 -2.8463 -2.3028 41 1 2.8022 -2.5883 -2.1995 42 1 2.9150 -2.9651 -4.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602778058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = 45.695059 kcal Electronic energy + Delta-G solvation = -21438.447144 eV Core-core repulsion = 18576.410914 eV Total energy + Delta-G solvation = -2862.036231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30169 -39.33347 -37.34107 -34.36554 -33.86552 -32.87251 -31.29791 -28.81591 -27.57171 -27.10217 -24.69298 -23.32676 -22.79766 -22.44358 -20.75839 -20.10662 -18.43577 -17.74241 -16.83714 -16.67508 -16.51036 -15.99029 -15.59830 -15.19108 -15.02404 -14.77283 -14.55540 -14.27451 -13.91091 -13.61031 -13.49378 -13.24843 -12.94498 -12.78644 -12.70248 -12.55698 -12.46321 -12.08733 -12.02901 -11.87005 -11.66850 -11.40831 -11.21313 -10.86894 -10.65918 -10.10657 -9.69878 -9.43352 -9.19719 -8.31520 -6.36454 0.49979 0.53232 1.29043 1.35477 1.47543 2.34289 2.84012 2.92215 2.99741 3.41983 3.74084 3.78190 3.98166 4.13547 4.23393 4.25033 4.31498 4.36879 4.43593 4.47719 4.52919 4.55056 4.62592 4.75980 4.78516 4.79890 4.88473 4.93270 5.01222 5.02442 5.10384 5.15014 5.20335 5.26440 5.33903 5.44250 5.62114 5.64047 5.65190 5.68492 5.77933 6.10601 6.19584 6.22584 6.34564 6.72287 7.31062 8.84500 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.005884 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.795102 B = 4757.210061 C = 5313.968669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.069 3.931 3 H 0.035 0.965 4 C -0.061 4.061 5 C -0.083 4.083 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.128 4.128 9 C -0.131 4.131 10 C -0.091 4.091 11 C 0.090 3.910 12 N -0.521 5.521 13 C 0.084 3.916 14 C -0.019 4.019 15 C -0.489 4.489 16 H 0.028 0.972 17 C 0.023 3.977 18 N -0.950 5.950 19 Si 0.932 3.068 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.231 1.231 23 C -0.179 4.179 24 C -0.160 4.160 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.017 0.983 37 H 0.077 0.923 38 H 0.266 0.734 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 -1.974 22.071 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.039 4.039 3 H 0.053 0.947 4 C -0.098 4.098 5 C -0.083 4.083 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.146 4.146 9 C -0.149 4.149 10 C -0.091 4.091 11 C -0.037 4.037 12 N -0.245 5.245 13 C -0.044 4.044 14 C -0.020 4.020 15 C -0.527 4.527 16 H 0.047 0.953 17 C -0.175 4.175 18 N -0.590 5.590 19 Si 0.757 3.243 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.154 1.154 23 C -0.216 4.216 24 C -0.197 4.197 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.363 -2.388 22.001 22.771 hybrid contribution -0.355 1.269 -1.049 1.684 sum 5.008 -1.119 20.952 21.571 Atomic orbital electron populations 1.21995 0.93613 1.02530 1.02655 1.21811 0.95955 0.95266 0.90832 0.94680 1.20567 0.90782 1.01632 0.96833 1.19810 0.96308 0.99506 0.92656 1.21352 0.94773 1.00074 0.98035 1.21420 0.94607 0.99700 0.98501 1.21322 1.00831 0.99977 0.92423 1.21234 0.93354 1.00639 0.99704 1.19686 0.94236 1.01113 0.94096 1.21039 0.87900 0.98881 0.95928 1.62382 1.02772 1.56738 1.02587 1.21956 0.98059 0.95491 0.88844 1.19243 1.03396 0.87114 0.92294 1.20603 1.00994 1.35353 0.95718 0.95324 1.25768 1.01154 0.94601 0.95939 1.70039 1.31772 1.40776 1.16366 0.86058 0.78186 0.80499 0.79597 1.19080 1.22204 1.15386 1.22880 0.95549 1.02558 1.00620 1.22823 0.92742 1.02765 1.01341 0.91699 0.88995 0.94048 0.89544 0.88169 0.83871 0.83511 0.84058 0.85984 0.89635 0.95210 0.96434 0.90545 0.92505 0.91634 0.89209 0.87138 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 8.14 71.98 0.59 -3.26 16 2 C 0.07 1.93 2.60 44.83 0.12 2.05 16 3 H 0.04 1.02 8.05 -2.39 -0.02 1.00 16 4 C -0.06 -1.36 5.25 29.82 0.16 -1.20 16 5 C -0.08 -2.04 5.77 -19.85 -0.11 -2.15 16 6 C -0.12 -2.45 9.66 22.32 0.22 -2.24 16 7 C -0.12 -2.26 10.05 22.23 0.22 -2.04 16 8 C -0.13 -2.59 10.05 22.22 0.22 -2.36 16 9 C -0.13 -3.30 9.65 22.33 0.22 -3.08 16 10 C -0.09 -2.59 5.79 -19.87 -0.12 -2.70 16 11 C 0.09 3.02 4.32 85.58 0.37 3.39 16 12 N -0.52 -17.82 3.47 -875.96 -3.04 -20.86 16 13 C 0.08 3.50 3.38 86.30 0.29 3.79 16 14 C -0.02 -0.90 1.29 -52.93 -0.07 -0.97 16 15 C -0.49 -28.46 9.38 25.60 0.24 -28.22 16 16 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 17 C 0.02 1.34 5.47 84.65 0.46 1.80 16 18 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 19 Si 0.93 44.36 24.66 68.60 1.69 46.05 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.23 -10.08 6.28 99.48 0.62 -9.45 16 23 C -0.18 -7.66 9.13 30.59 0.28 -7.38 16 24 C -0.16 -6.69 8.21 30.60 0.25 -6.44 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 1.72 8.13 -2.39 -0.02 1.70 16 27 H 0.04 1.20 6.56 -2.39 -0.02 1.18 16 28 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 33 H 0.12 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.09 3.11 5.71 -2.38 -0.01 3.09 16 35 H 0.03 1.06 7.97 -2.39 -0.02 1.04 16 36 H 0.02 0.80 7.74 -2.39 -0.02 0.78 16 37 H 0.08 3.10 2.59 -2.39 -0.01 3.09 16 38 H 0.27 15.76 8.31 -92.72 -0.77 14.99 16 39 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 40 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.11 4.23 5.53 -2.39 -0.01 4.22 16 42 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -66.84 320.41 3.19 -63.65 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.91 Total: 21.94 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 3.33 Total: -51.02 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.74 Total: -80.62 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.69 Total: 46.05 kcal Total: -66.84 3.19 -63.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602778058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.346 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds