Wall clock time and date at job start Mon Mar 30 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00363 * 2 1 4 4 H 1.48497 * 109.47179 * 269.23727 * 3 2 1 5 5 H 1.48505 * 109.46989 * 29.23638 * 3 2 1 6 6 H 1.48498 * 109.47331 * 149.23514 * 3 2 1 7 7 C 1.37886 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99796 * 1.68515 * 7 2 1 9 9 C 1.50698 * 120.00058 * 181.68941 * 7 2 1 10 10 C 1.53007 * 115.55935 * 86.91354 * 9 7 2 11 11 N 1.46899 * 109.47017 * 39.70735 * 10 9 7 12 12 C 1.46904 * 110.99815 * 174.14647 * 11 10 9 13 13 C 1.50692 * 112.85386 * 294.77235 * 12 11 10 14 14 C 1.38235 * 120.00530 * 158.78412 * 13 12 11 15 15 C 1.38232 * 120.00133 * 179.78717 * 14 13 12 16 16 C 1.38234 * 120.00124 * 0.45290 * 15 14 13 17 17 C 1.38236 * 120.00092 * 359.77523 * 16 15 14 18 18 C 1.38239 * 119.99742 * 0.02562 * 17 16 15 19 19 C 1.53774 * 113.61487 * 163.56518 * 12 11 10 20 20 C 1.54048 * 86.99262 * 270.84497 * 19 12 11 21 21 C 1.53781 * 87.07483 * 334.56827 * 20 19 12 22 22 C 1.52993 * 117.49977 * 301.22776 * 9 7 2 23 23 C 1.52997 * 117.50002 * 232.60091 * 9 7 2 24 24 H 0.97000 * 119.99863 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46780 * 159.71027 * 10 9 7 26 26 H 1.09000 * 109.47176 * 279.70887 * 10 9 7 27 27 H 1.00892 * 111.00340 * 298.10439 * 11 10 9 28 28 H 1.08004 * 119.99485 * 359.97438 * 14 13 12 29 29 H 1.08004 * 120.00077 * 180.24972 * 15 14 13 30 30 H 1.08001 * 120.00161 * 179.79609 * 16 15 14 31 31 H 1.07994 * 120.00186 * 179.97438 * 17 16 15 32 32 H 1.08004 * 120.00068 * 179.97438 * 18 17 16 33 33 H 1.09005 * 113.61597 * 25.44008 * 19 12 11 34 34 H 1.09000 * 113.61796 * 156.33856 * 19 12 11 35 35 H 1.08997 * 113.62378 * 220.02406 * 20 19 12 36 36 H 1.09003 * 113.69370 * 89.12073 * 20 19 12 37 37 H 1.09002 * 113.61474 * 270.88315 * 21 20 19 38 38 H 1.09002 * 113.61776 * 139.97339 * 21 20 19 39 39 H 1.09002 * 117.50235 * 145.02096 * 22 9 7 40 40 H 1.09001 * 117.50156 * 359.97438 * 22 9 7 41 41 H 1.08999 * 117.49418 * 0.02562 * 23 9 7 42 42 H 1.09000 * 117.52028 * 214.96967 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5129 2.0370 -1.3999 5 1 1.4387 2.6573 0.6838 6 1 3.5386 1.4448 0.7161 7 6 2.0045 -1.1941 0.0005 8 1 1.4648 -2.1293 -0.0266 9 6 3.5110 -1.1945 0.0390 10 6 4.1357 -1.1400 1.4347 11 7 3.3619 -1.9883 2.3509 12 6 4.0110 -2.0713 3.6662 13 6 5.3472 -2.7662 3.6166 14 6 6.2732 -2.5564 4.6214 15 6 7.4972 -3.1973 4.5781 16 6 7.7990 -4.0407 3.5253 17 6 6.8749 -4.2468 2.5180 18 6 5.6492 -3.6091 2.5634 19 6 3.0858 -2.5936 4.7778 20 6 2.6755 -1.1276 5.0134 21 6 4.0401 -0.7335 4.4242 22 6 4.2467 -0.4745 -1.0928 23 6 4.2449 -2.0034 -1.0324 24 1 -0.4850 0.8401 -0.0004 25 1 5.1636 -1.4998 1.3869 26 1 4.1271 -0.1119 1.7967 27 1 2.4129 -1.6566 2.4363 28 1 6.0390 -1.8941 5.4418 29 1 8.2191 -3.0365 5.3652 30 1 8.7566 -4.5389 3.4898 31 1 7.1108 -4.9054 1.6953 32 1 4.9274 -3.7698 1.7763 33 1 2.2742 -3.2221 4.4111 34 1 3.6199 -3.0379 5.6177 35 1 2.5636 -0.8692 6.0664 36 1 1.8288 -0.8068 4.4066 37 1 4.8349 -0.6701 5.1675 38 1 3.9986 0.1389 3.7719 39 1 5.1759 0.0379 -0.8433 40 1 3.6412 -0.0010 -1.8656 41 1 3.6380 -2.5349 -1.7653 42 1 5.1729 -2.4967 -0.7434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602780833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:43 Heat of formation + Delta-G solvation = 77.040672 kcal Electronic energy + Delta-G solvation = -21415.309339 eV Core-core repulsion = 18554.632357 eV Total energy + Delta-G solvation = -2860.676983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23895 -37.85054 -36.86605 -32.48940 -32.06430 -30.74807 -30.46934 -26.20040 -25.59266 -24.85132 -23.57094 -22.27439 -21.54741 -21.20028 -18.90499 -18.34589 -17.00342 -16.11544 -15.39586 -15.26467 -14.92304 -14.69865 -14.27164 -13.88082 -13.46452 -13.16496 -13.10411 -12.78295 -12.63650 -12.57428 -12.06079 -11.92536 -11.40591 -11.38339 -11.07994 -10.87259 -10.74669 -10.45436 -10.34031 -10.26378 -10.01010 -9.96728 -9.46383 -9.00741 -8.68084 -8.61418 -8.40734 -8.37516 -7.55561 -6.09393 -4.10329 1.55936 1.64412 3.28125 3.37950 3.42668 3.98615 4.42609 4.56334 4.82227 4.90721 4.98353 5.05595 5.14536 5.17971 5.21999 5.25303 5.36788 5.57650 5.78370 5.84031 5.88627 5.90976 5.94928 6.07618 6.16697 6.19876 6.23396 6.26708 6.30736 6.38355 6.45896 6.54718 6.57625 6.61596 6.66762 6.78149 6.80727 6.94101 7.10282 7.19483 7.25251 7.78254 7.90703 8.26312 8.58126 8.98380 9.54503 11.02088 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.006844 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.220348 B = 4090.222255 C = 4837.486593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.874 3.126 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.081 0.919 9 C 0.011 3.989 10 C 0.096 3.904 11 N -0.644 5.644 12 C 0.132 3.868 13 C -0.053 4.053 14 C -0.122 4.122 15 C -0.129 4.129 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.091 4.091 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.176 4.176 22 C -0.210 4.210 23 C -0.175 4.175 24 H 0.263 0.737 25 H 0.052 0.948 26 H 0.022 0.978 27 H 0.363 0.637 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.864 -4.386 9.584 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.184 1.184 7 C -0.513 4.513 8 H 0.099 0.901 9 C 0.009 3.991 10 C -0.033 4.033 11 N -0.276 5.276 12 C 0.039 3.961 13 C -0.054 4.054 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.109 4.109 19 C -0.162 4.162 20 C -0.180 4.180 21 C -0.216 4.216 22 C -0.247 4.247 23 C -0.213 4.213 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.186 0.814 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.933 -4.853 9.335 15.909 hybrid contribution 0.326 1.991 0.221 2.030 sum 12.259 -2.862 9.556 15.805 Atomic orbital electron populations 1.69897 1.06206 1.26878 1.50628 1.24976 0.94517 0.98733 0.94416 0.86960 0.80464 0.83752 0.78549 1.20597 1.22458 1.18372 1.20271 0.86495 0.94301 1.50206 0.90108 1.19369 0.94735 0.98777 0.86186 1.21608 0.95341 0.93423 0.92953 1.60232 1.06489 1.55421 1.05478 1.20880 0.91268 0.93593 0.90377 1.19672 0.94529 0.96771 0.94422 1.21013 0.93793 1.00262 0.99003 1.20994 0.96862 0.98199 0.98631 1.21066 0.99264 0.99453 0.95096 1.21205 0.94361 1.00266 0.98717 1.21339 0.96484 0.94871 0.98194 1.23086 0.99186 0.96659 0.97262 1.22888 0.97615 0.96667 1.00871 1.23794 0.97862 0.99403 1.00525 1.22978 1.01659 0.95090 1.05011 1.22793 1.01123 0.92524 1.04827 0.92718 0.92952 0.95986 0.81368 0.86379 0.86723 0.86810 0.86470 0.84218 0.90385 0.90080 0.91696 0.89630 0.90076 0.91298 0.91350 0.89668 0.89833 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.38 24.99 -169.99 -4.25 17.13 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.07 5.46 56.52 0.31 -5.76 16 7 C -0.47 -12.59 8.09 -34.44 -0.28 -12.87 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 9 C 0.01 0.24 1.22 -155.66 -0.19 0.05 16 10 C 0.10 1.95 4.93 -3.82 -0.02 1.93 16 11 N -0.64 -12.22 5.25 -100.31 -0.53 -12.74 16 12 C 0.13 2.08 1.03 -131.94 -0.14 1.95 16 13 C -0.05 -0.81 4.64 -104.63 -0.49 -1.30 16 14 C -0.12 -1.64 9.12 -39.58 -0.36 -2.00 16 15 C -0.13 -1.57 10.05 -39.59 -0.40 -1.96 16 16 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 17 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 18 C -0.09 -1.41 8.03 -39.58 -0.32 -1.73 16 19 C -0.12 -1.75 7.31 -25.78 -0.19 -1.93 16 20 C -0.14 -2.00 7.75 -25.78 -0.20 -2.20 16 21 C -0.18 -2.62 6.96 -25.91 -0.18 -2.80 16 22 C -0.21 -4.50 7.52 -26.73 -0.20 -4.71 16 23 C -0.18 -3.60 9.88 -26.73 -0.26 -3.86 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.05 1.02 6.07 -51.93 -0.32 0.71 16 26 H 0.02 0.48 5.21 -51.93 -0.27 0.21 16 27 H 0.36 7.60 6.90 -39.30 -0.27 7.33 16 28 H 0.12 1.40 6.11 -52.48 -0.32 1.08 16 29 H 0.11 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 2.39 7.15 -52.48 -0.38 2.01 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.33 7.73 -51.93 -0.40 0.93 16 37 H 0.08 1.05 5.89 -51.93 -0.31 0.74 16 38 H 0.07 1.15 6.77 -51.93 -0.35 0.80 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.93 7.09 -51.93 -0.37 1.56 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -27.98 324.10 -9.65 -37.63 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.43 Total: 12.28 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -4.11 Total: -33.55 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.25 Total: -38.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.25 Total: 17.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.98 -9.65 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.674 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds