Wall clock time and date at job start Mon Mar 30 2020 01:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48502 * 109.47055 * 269.99808 * 3 2 1 5 5 H 1.48503 * 109.47243 * 29.99568 * 3 2 1 6 6 H 1.48499 * 109.47241 * 150.00053 * 3 2 1 7 7 C 1.37868 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00394 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47520 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47336 * 179.97438 * 10 9 7 12 12 C 1.47847 * 111.00371 * 290.84922 * 11 10 9 13 13 C 1.54904 * 104.79520 * 213.63356 * 12 11 10 14 14 C 1.55135 * 101.65352 * 37.07026 * 13 12 11 15 15 C 1.47437 * 111.00329 * 170.00428 * 11 10 9 16 16 H 1.09001 * 109.88697 * 242.66845 * 15 11 10 17 17 C 1.50697 * 109.88749 * 3.85290 * 15 11 10 18 18 C 1.32571 * 120.00200 * 246.21622 * 17 15 11 19 19 C 1.47810 * 120.00162 * 7.20401 * 18 17 15 20 20 C 1.39533 * 120.14336 * 219.01771 * 19 18 17 21 21 C 1.37974 * 119.85544 * 179.67905 * 20 19 18 22 22 C 1.38346 * 120.14148 * 0.60989 * 21 20 19 23 23 C 1.38345 * 120.28450 * 359.68576 * 22 21 20 24 24 C 1.37975 * 120.14162 * 359.97438 * 23 22 21 25 25 H 0.96993 * 119.99991 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46997 * 59.99645 * 9 7 2 27 27 H 1.09004 * 109.46581 * 300.00119 * 9 7 2 28 28 H 1.08992 * 109.47347 * 300.00452 * 10 9 7 29 29 H 1.09009 * 109.46775 * 60.00500 * 10 9 7 30 30 H 1.08999 * 110.37152 * 332.46406 * 12 11 10 31 31 H 1.09001 * 110.37299 * 94.80141 * 12 11 10 32 32 H 1.09004 * 110.99115 * 278.97261 * 13 12 11 33 33 H 1.08998 * 111.02030 * 155.17462 * 13 12 11 34 34 H 1.09002 * 110.70642 * 205.96773 * 14 13 12 35 35 H 1.08996 * 110.85885 * 82.80101 * 14 13 12 36 36 H 1.08004 * 120.00056 * 66.20936 * 17 15 11 37 37 H 1.07997 * 120.00017 * 187.20971 * 18 17 15 38 38 H 1.08000 * 120.06928 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.92686 * 180.32107 * 21 20 19 40 40 H 1.07999 * 119.85365 * 179.69802 * 22 21 20 41 41 H 1.07999 * 119.93013 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.06876 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 7 5.4906 -2.6365 0.0022 12 6 6.0205 -2.1463 -1.2881 13 6 7.3264 -2.9493 -1.5101 14 6 6.9375 -4.3418 -0.9474 15 6 6.0191 -3.9918 0.2422 16 1 6.5914 -4.0078 1.1698 17 6 4.8829 -4.9786 0.3203 18 6 4.6200 -5.5978 1.4627 19 6 5.3335 -5.2066 2.6966 20 6 5.7378 -6.1801 3.6108 21 6 6.4093 -5.8089 4.7575 22 6 6.6709 -4.4737 5.0080 23 6 6.2673 -3.5031 4.1086 24 6 5.6011 -3.8617 2.9548 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6580 -3.1497 0.8923 29 1 3.6587 -3.1509 -0.8876 30 1 5.3106 -2.3467 -2.0905 31 1 6.2364 -1.0795 -1.2289 32 1 8.1519 -2.5164 -0.9450 33 1 7.5718 -3.0113 -2.5703 34 1 7.8217 -4.8802 -0.6062 35 1 6.3970 -4.9246 -1.6932 36 1 4.2826 -5.1814 -0.5544 37 1 3.8845 -6.3881 1.4918 38 1 5.5297 -7.2224 3.4189 39 1 6.7274 -6.5620 5.4634 40 1 7.1926 -4.1879 5.9094 41 1 6.4748 -2.4624 4.3096 42 1 5.2869 -3.1031 2.2533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611554683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:12 Heat of formation + Delta-G solvation = 47.129240 kcal Electronic energy + Delta-G solvation = -20801.123947 eV Core-core repulsion = 17939.149907 eV Total energy + Delta-G solvation = -2861.974040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88343 -38.46011 -34.26737 -33.65923 -31.88392 -30.88130 -29.89080 -28.89144 -27.61390 -24.40917 -22.97609 -22.40276 -21.44195 -20.68755 -20.20163 -18.43851 -16.94523 -16.25159 -15.91145 -15.52485 -14.92121 -14.81579 -14.19134 -14.03686 -13.73934 -13.45927 -13.09382 -12.90239 -12.66716 -12.52385 -12.34479 -12.08892 -11.65120 -11.30529 -11.10252 -10.96388 -10.91730 -10.79853 -10.72305 -10.45800 -9.94414 -9.85273 -9.68259 -9.59865 -9.17160 -8.74914 -8.50686 -8.25888 -7.66567 -6.01987 -3.99837 1.16331 1.55448 2.48010 3.33316 3.40935 3.47138 3.97466 4.48473 4.49488 4.76863 4.82376 4.95586 5.00754 5.03795 5.09580 5.28846 5.32661 5.33254 5.53419 5.59536 5.67287 5.72210 5.79269 5.88562 5.98839 6.05108 6.09569 6.11117 6.21441 6.29108 6.35978 6.42449 6.47246 6.60921 6.65533 6.75476 6.83210 6.93418 7.15953 7.19825 7.31462 7.56339 7.65020 7.87925 8.55858 9.02331 9.60890 11.11477 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.005617 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.663389 B = 4983.927928 C = 5786.276713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.064 3.936 11 N -0.525 5.525 12 C 0.044 3.956 13 C -0.129 4.129 14 C -0.133 4.133 15 C 0.084 3.916 16 H 0.099 0.901 17 C -0.139 4.139 18 C -0.125 4.125 19 C -0.056 4.056 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.009 0.991 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.045 -11.044 3.546 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.044 4.044 10 C -0.062 4.062 11 N -0.249 5.249 12 C -0.084 4.084 13 C -0.168 4.168 14 C -0.172 4.172 15 C -0.024 4.024 16 H 0.116 0.884 17 C -0.158 4.158 18 C -0.145 4.145 19 C -0.056 4.056 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.121 4.121 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.043 -10.576 3.947 19.617 hybrid contribution -0.148 0.316 -0.670 0.756 sum 15.896 -10.260 3.277 19.201 Atomic orbital electron populations 1.69916 1.06311 1.26846 1.51302 1.24983 0.94681 0.99114 0.94534 0.86785 0.80564 0.83586 0.78451 1.20425 1.21469 1.18727 1.21079 0.89460 0.94423 1.50800 0.91214 1.19550 0.96401 0.91794 0.96682 1.22356 0.83830 1.00049 1.00004 1.63881 1.10322 1.19228 1.31424 1.23039 0.94712 0.99891 0.90772 1.22715 0.98221 0.95242 1.00574 1.22813 0.99296 0.97427 0.97636 1.21982 0.93707 0.87254 0.99433 0.88363 1.23607 0.97430 0.96654 0.98130 1.21585 1.00293 1.00906 0.91671 1.19085 0.98426 0.93306 0.94737 1.21206 0.99016 0.98810 0.94209 1.20989 1.00152 0.96110 0.97503 1.21176 1.00527 0.93200 0.99369 1.21152 0.98904 0.99508 0.94359 1.21963 0.96733 0.96119 0.97244 0.92787 0.95878 0.97223 0.90963 0.95383 0.93397 0.90409 0.90976 0.91260 0.91306 0.91517 0.86557 0.86300 0.86360 0.86508 0.86554 0.86001 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C -0.01 -0.16 4.08 -27.88 -0.11 -0.27 16 10 C 0.06 1.30 3.25 -3.83 -0.01 1.28 16 11 N -0.52 -8.90 4.32 -224.73 -0.97 -9.87 16 12 C 0.04 0.67 5.78 -2.30 -0.01 0.66 16 13 C -0.13 -1.57 7.08 -24.60 -0.17 -1.74 16 14 C -0.13 -1.62 6.46 -24.91 -0.16 -1.78 16 15 C 0.08 1.20 2.55 -67.88 -0.17 1.03 16 16 H 0.10 1.46 4.86 -51.93 -0.25 1.21 16 17 C -0.14 -1.98 5.93 -36.22 -0.21 -2.20 16 18 C -0.13 -1.72 9.61 -37.57 -0.36 -2.08 16 19 C -0.06 -0.78 5.14 -105.02 -0.54 -1.32 16 20 C -0.11 -1.40 9.79 -39.20 -0.38 -1.78 16 21 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 22 C -0.12 -1.47 10.04 -39.50 -0.40 -1.86 16 23 C -0.12 -1.63 10.03 -39.64 -0.40 -2.03 16 24 C -0.10 -1.55 7.31 -39.20 -0.29 -1.84 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 27 H 0.01 0.23 6.92 -51.93 -0.36 -0.13 16 28 H 0.07 1.50 6.10 -51.93 -0.32 1.19 16 29 H 0.03 0.57 7.20 -51.92 -0.37 0.20 16 30 H 0.05 0.77 7.62 -51.93 -0.40 0.38 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 36 H 0.12 1.64 7.59 -52.48 -0.40 1.24 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.15 2.53 4.58 -52.49 -0.24 2.29 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -30.86 327.78 -10.49 -41.35 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.51 Total: 2.73 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -4.06 Total: -29.16 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.20 Total: -37.27 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.86 -10.49 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611554683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.482 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds