Wall clock time and date at job start Mon Mar 30 2020 01:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48502 * 109.47055 * 269.99808 * 3 2 1 5 5 H 1.48503 * 109.47243 * 29.99568 * 3 2 1 6 6 H 1.48499 * 109.47241 * 150.00053 * 3 2 1 7 7 C 1.37868 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00394 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47520 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47336 * 179.97438 * 10 9 7 12 12 C 1.47847 * 111.00371 * 290.84922 * 11 10 9 13 13 C 1.54904 * 104.79520 * 213.63356 * 12 11 10 14 14 C 1.55135 * 101.65352 * 37.07026 * 13 12 11 15 15 C 1.47437 * 111.00329 * 170.00428 * 11 10 9 16 16 H 1.09001 * 109.88697 * 242.66845 * 15 11 10 17 17 C 1.50697 * 109.88749 * 3.85290 * 15 11 10 18 18 C 1.32571 * 120.00200 * 246.21622 * 17 15 11 19 19 C 1.47810 * 120.00162 * 7.20401 * 18 17 15 20 20 C 1.39533 * 120.14336 * 219.01771 * 19 18 17 21 21 C 1.37974 * 119.85544 * 179.67905 * 20 19 18 22 22 C 1.38346 * 120.14148 * 0.60989 * 21 20 19 23 23 C 1.38345 * 120.28450 * 359.68576 * 22 21 20 24 24 C 1.37975 * 120.14162 * 359.97438 * 23 22 21 25 25 H 0.96993 * 119.99991 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46997 * 59.99645 * 9 7 2 27 27 H 1.09004 * 109.46581 * 300.00119 * 9 7 2 28 28 H 1.08992 * 109.47347 * 300.00452 * 10 9 7 29 29 H 1.09009 * 109.46775 * 60.00500 * 10 9 7 30 30 H 1.08999 * 110.37152 * 332.46406 * 12 11 10 31 31 H 1.09001 * 110.37299 * 94.80141 * 12 11 10 32 32 H 1.09004 * 110.99115 * 278.97261 * 13 12 11 33 33 H 1.08998 * 111.02030 * 155.17462 * 13 12 11 34 34 H 1.09002 * 110.70642 * 205.96773 * 14 13 12 35 35 H 1.08996 * 110.85885 * 82.80101 * 14 13 12 36 36 H 1.08004 * 120.00056 * 66.20936 * 17 15 11 37 37 H 1.07997 * 120.00017 * 187.20971 * 18 17 15 38 38 H 1.08000 * 120.06928 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.92686 * 180.32107 * 21 20 19 40 40 H 1.07999 * 119.85365 * 179.69802 * 22 21 20 41 41 H 1.07999 * 119.93013 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.06876 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 7 5.4906 -2.6365 0.0022 12 6 6.0205 -2.1463 -1.2881 13 6 7.3264 -2.9493 -1.5101 14 6 6.9375 -4.3418 -0.9474 15 6 6.0191 -3.9918 0.2422 16 1 6.5914 -4.0078 1.1698 17 6 4.8829 -4.9786 0.3203 18 6 4.6200 -5.5978 1.4627 19 6 5.3335 -5.2066 2.6966 20 6 5.7378 -6.1801 3.6108 21 6 6.4093 -5.8089 4.7575 22 6 6.6709 -4.4737 5.0080 23 6 6.2673 -3.5031 4.1086 24 6 5.6011 -3.8617 2.9548 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6580 -3.1497 0.8923 29 1 3.6587 -3.1509 -0.8876 30 1 5.3106 -2.3467 -2.0905 31 1 6.2364 -1.0795 -1.2289 32 1 8.1519 -2.5164 -0.9450 33 1 7.5718 -3.0113 -2.5703 34 1 7.8217 -4.8802 -0.6062 35 1 6.3970 -4.9246 -1.6932 36 1 4.2826 -5.1814 -0.5544 37 1 3.8845 -6.3881 1.4918 38 1 5.5297 -7.2224 3.4189 39 1 6.7274 -6.5620 5.4634 40 1 7.1926 -4.1879 5.9094 41 1 6.4748 -2.4624 4.3096 42 1 5.2869 -3.1031 2.2533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611554683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:12 Heat of formation + Delta-G solvation = 30.240735 kcal Electronic energy + Delta-G solvation = -20801.856287 eV Core-core repulsion = 17939.149907 eV Total energy + Delta-G solvation = -2862.706380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02182 -39.53108 -35.66624 -35.24348 -33.72580 -31.87183 -30.95639 -30.55806 -28.70670 -26.24355 -24.01717 -23.38610 -23.02139 -21.78237 -21.57327 -19.67543 -19.00102 -17.37583 -17.15459 -16.60082 -16.25764 -16.07808 -15.81409 -15.52038 -14.96182 -14.68916 -14.50862 -14.17354 -14.02744 -13.90087 -13.51496 -13.39887 -13.09015 -12.95254 -12.64610 -12.12152 -11.97785 -11.86718 -11.83042 -11.77145 -11.71678 -11.57984 -11.43007 -11.36772 -10.77755 -10.65982 -9.74362 -9.43749 -8.88056 -8.30972 -6.34878 0.15001 0.57152 1.33596 1.36252 1.42192 1.49483 2.35178 2.98384 3.04684 3.19004 3.70889 3.77204 3.86496 3.96053 4.12669 4.20134 4.28448 4.33828 4.40893 4.46907 4.58685 4.63635 4.64863 4.66331 4.77509 4.93495 4.94891 5.00499 5.05681 5.12220 5.17775 5.22127 5.31425 5.38164 5.44525 5.47217 5.55203 5.63424 5.67349 5.74222 5.88771 6.13653 6.17864 6.21580 6.31133 6.72412 7.29938 8.85854 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.005617 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.663389 B = 4983.927928 C = 5786.276713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.530 4.530 8 H 0.030 0.970 9 C 0.002 3.998 10 C 0.086 3.914 11 N -0.531 5.531 12 C 0.035 3.965 13 C -0.117 4.117 14 C -0.129 4.129 15 C 0.086 3.914 16 H 0.096 0.904 17 C -0.155 4.155 18 C -0.123 4.123 19 C -0.073 4.073 20 C -0.116 4.116 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.126 4.126 25 H 0.267 0.733 26 H 0.017 0.983 27 H 0.015 0.985 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.774 -11.487 4.236 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.569 4.569 8 H 0.049 0.951 9 C -0.036 4.036 10 C -0.042 4.042 11 N -0.255 5.255 12 C -0.093 4.093 13 C -0.155 4.155 14 C -0.167 4.167 15 C -0.021 4.021 16 H 0.114 0.886 17 C -0.174 4.174 18 C -0.142 4.142 19 C -0.073 4.073 20 C -0.134 4.134 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.144 4.144 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.792 -11.036 4.632 22.280 hybrid contribution -1.039 0.354 -0.805 1.361 sum 17.753 -10.683 3.826 21.070 Atomic orbital electron populations 1.70063 1.08219 1.28155 1.52645 1.25939 0.95558 1.03333 0.94013 0.85670 0.79467 0.78359 0.79255 1.19007 1.20811 1.17372 1.21383 0.91878 0.93100 1.50500 0.95138 1.19413 0.93384 0.94491 0.96345 1.21927 0.86293 0.97032 0.98951 1.63767 1.07752 1.21453 1.32487 1.23138 0.96268 1.00269 0.89617 1.22679 0.96437 0.94268 1.02137 1.22817 0.99458 0.97737 0.96679 1.21963 0.93995 0.85759 1.00391 0.88610 1.23603 0.97962 0.97444 0.98364 1.21808 1.00023 1.00794 0.91573 1.19188 0.99315 0.93408 0.95391 1.21505 0.98461 0.99468 0.93980 1.21398 0.98899 0.96692 0.97470 1.21512 0.99772 0.93106 0.99670 1.21317 0.99179 1.00444 0.94394 1.21848 0.98421 0.96191 0.97892 0.92459 0.96452 0.96680 0.92241 0.96332 0.94485 0.90845 0.90077 0.89087 0.89409 0.91143 0.86969 0.85089 0.84249 0.83355 0.83869 0.85561 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.80 13.96 21.44 0.30 -60.50 16 2 C 0.01 0.51 5.47 84.65 0.46 0.97 16 3 Si 0.95 45.73 27.47 68.60 1.88 47.62 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 7 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 9 C 0.00 0.07 4.08 29.85 0.12 0.20 16 10 C 0.09 3.57 3.25 86.30 0.28 3.85 16 11 N -0.53 -18.10 4.32 -864.93 -3.74 -21.84 16 12 C 0.03 1.04 5.78 86.77 0.50 1.55 16 13 C -0.12 -2.58 7.08 31.98 0.23 -2.36 16 14 C -0.13 -2.89 6.46 31.77 0.21 -2.69 16 15 C 0.09 2.44 2.55 44.51 0.11 2.55 16 16 H 0.10 2.82 4.86 -2.39 -0.01 2.80 16 17 C -0.15 -4.46 5.93 24.53 0.15 -4.31 16 18 C -0.12 -3.38 9.61 23.65 0.23 -3.15 16 19 C -0.07 -2.01 5.14 -20.12 -0.10 -2.12 16 20 C -0.12 -2.60 9.79 22.52 0.22 -2.38 16 21 C -0.13 -2.49 10.03 22.23 0.22 -2.27 16 22 C -0.12 -2.59 10.04 22.32 0.22 -2.36 16 23 C -0.14 -3.54 10.03 22.23 0.22 -3.32 16 24 C -0.13 -3.82 7.31 22.52 0.16 -3.65 16 25 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 27 H 0.01 0.72 6.92 -2.38 -0.02 0.70 16 28 H 0.06 2.61 6.10 -2.39 -0.01 2.59 16 29 H 0.02 0.79 7.20 -2.38 -0.02 0.78 16 30 H 0.04 1.19 7.62 -2.39 -0.02 1.17 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 36 H 0.11 3.26 7.59 -2.91 -0.02 3.23 16 37 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.12 4.36 4.58 -2.91 -0.01 4.35 16 Total: -1.00 -68.35 327.78 2.86 -65.49 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.93 Total: 20.09 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 3.48 Total: -50.85 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -3.44 Total: -82.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.62 kcal Total: -68.35 2.86 -65.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611554683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.730 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds