Wall clock time and date at job start Mon Mar 30 2020 01:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48504 * 109.46831 * 240.00002 * 3 2 1 5 5 H 1.48500 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46836 * 119.99894 * 3 2 1 7 7 C 1.39949 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99311 * 197.85732 * 7 2 1 9 9 C 1.41393 * 120.00006 * 17.85558 * 7 2 1 10 10 C 1.40712 * 120.24736 * 24.38915 * 9 7 2 11 11 C 1.37615 * 119.74445 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24776 * 0.02777 * 11 10 9 13 13 C 1.50704 * 119.74685 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47510 * 89.99426 * 13 12 11 15 15 C 1.48671 * 111.11004 * 285.41866 * 14 13 12 16 16 C 1.54373 * 104.67125 * 201.09681 * 15 14 13 17 17 C 1.54265 * 105.06249 * 23.77105 * 16 15 14 18 18 C 1.48562 * 111.00062 * 169.99881 * 14 13 12 19 19 H 1.08994 * 110.41132 * 40.13975 * 18 14 13 20 20 C 1.52999 * 110.40926 * 277.81979 * 18 14 13 21 21 C 1.53000 * 117.52002 * 112.93547 * 20 18 14 22 22 C 1.52998 * 60.00260 * 107.47908 * 21 20 18 23 23 C 1.38635 * 120.50322 * 0.24485 * 12 11 10 24 24 C 1.37617 * 120.24275 * 359.45190 * 23 12 11 25 25 H 0.96998 * 119.99922 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.12601 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.87881 * 179.97438 * 11 10 9 28 28 H 1.09003 * 109.47269 * 329.98947 * 13 12 11 29 29 H 1.09002 * 109.46873 * 209.99521 * 13 12 11 30 30 H 1.09002 * 110.44009 * 82.25582 * 15 14 13 31 31 H 1.09006 * 110.30312 * 319.86723 * 15 14 13 32 32 H 1.08997 * 110.32570 * 264.87304 * 16 15 14 33 33 H 1.09007 * 110.32525 * 142.66753 * 16 15 14 34 34 H 1.09001 * 110.32271 * 241.10087 * 17 16 15 35 35 H 1.08999 * 110.32447 * 118.89605 * 17 16 15 36 36 H 1.09002 * 115.55614 * 327.23365 * 20 18 14 37 37 H 1.09004 * 117.50230 * 214.97086 * 21 20 18 38 38 H 1.09003 * 117.49746 * 359.97438 * 21 20 18 39 39 H 1.09001 * 117.49519 * 252.51622 * 22 21 20 40 40 H 1.08993 * 117.49684 * 107.49118 * 22 21 20 41 41 H 1.07996 * 119.87778 * 179.70646 * 23 12 11 42 42 H 1.08010 * 120.12538 * 180.27167 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3520 -2.4068 -0.3765 10 6 0.2208 -2.3617 -1.2122 11 6 -0.4099 -3.5309 -1.5713 12 6 0.0649 -4.7499 -1.1124 13 6 -0.6349 -6.0233 -1.5122 14 7 -0.0442 -6.5373 -2.7551 15 6 -0.4771 -5.7314 -3.9270 16 6 -0.2569 -6.6582 -5.1417 17 6 -0.2971 -8.0892 -4.5667 18 6 -0.5381 -7.9064 -3.0529 19 1 -1.6011 -7.9850 -2.8249 20 6 0.2553 -8.9447 -2.2571 21 6 -0.4882 -9.7189 -1.1668 22 6 -0.0971 -10.4183 -2.4701 23 6 1.1751 -4.8059 -0.2840 24 6 1.8253 -3.6499 0.0828 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1509 -1.4130 -1.5704 27 1 -1.2785 -3.4987 -2.2122 28 1 -1.6945 -5.8216 -1.6697 29 1 -0.5199 -6.7647 -0.7215 30 1 0.1341 -4.8335 -4.0181 31 1 -1.5308 -5.4675 -3.8361 32 1 0.7131 -6.4606 -5.5979 33 1 -1.0545 -6.5212 -5.8720 34 1 0.6533 -8.5938 -4.7406 35 1 -1.1143 -8.6544 -5.0146 36 1 1.3015 -8.6987 -2.0751 37 1 0.0688 -9.9822 -0.2675 38 1 -1.5428 -9.4883 -1.0159 39 1 -0.8945 -10.6479 -3.1769 40 1 0.7172 -11.1416 -2.4284 41 1 1.5335 -5.7607 0.0714 42 1 2.6928 -3.6961 0.7247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612069909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:06 Heat of formation + Delta-G solvation = 37.500173 kcal Electronic energy + Delta-G solvation = -20397.364806 eV Core-core repulsion = 17534.973219 eV Total energy + Delta-G solvation = -2862.391587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.34202 -37.45824 -36.18220 -33.90060 -32.11760 -29.60125 -29.16177 -28.51784 -26.25353 -23.59562 -22.55035 -22.03759 -21.16231 -20.44456 -19.69313 -19.56195 -17.24149 -16.08377 -15.68396 -15.27703 -14.89512 -14.28077 -13.94969 -13.83607 -13.69612 -12.96016 -12.69909 -12.54953 -12.24482 -12.03643 -11.89378 -11.59631 -11.50991 -11.22805 -11.16747 -11.03527 -10.90528 -10.72238 -10.51012 -10.37587 -10.34103 -10.15864 -9.83435 -9.49840 -9.32528 -9.07387 -8.06977 -7.38073 -7.23284 -6.72202 -4.29973 2.79499 3.08026 3.10889 3.14526 3.22785 3.78362 3.95845 4.27146 4.65408 4.77301 4.84023 5.01501 5.06856 5.12676 5.22736 5.40347 5.58747 5.60955 5.71077 5.78695 5.82252 5.89001 5.89822 5.95990 5.97202 6.08641 6.21762 6.25527 6.32107 6.38579 6.39775 6.46370 6.48639 6.99056 7.11735 7.23367 7.38278 7.43958 7.50352 7.67589 7.94854 8.10593 8.20718 8.35991 8.69194 8.94714 9.03591 10.22442 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.003904 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.918379 B = 7170.081348 C = 7601.440322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.094 4.094 12 C -0.203 4.203 13 C 0.111 3.889 14 N -0.495 5.495 15 C 0.038 3.962 16 C -0.126 4.126 17 C -0.114 4.114 18 C 0.088 3.912 19 H 0.045 0.955 20 C -0.127 4.127 21 C -0.184 4.184 22 C -0.181 4.181 23 C -0.070 4.070 24 C -0.228 4.228 25 H 0.280 0.720 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -12.756 -6.598 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.185 4.185 11 C -0.113 4.113 12 C -0.204 4.204 13 C -0.016 4.016 14 N -0.219 5.219 15 C -0.090 4.090 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.020 4.020 19 H 0.062 0.938 20 C -0.146 4.146 21 C -0.221 4.221 22 C -0.218 4.218 23 C -0.089 4.089 24 C -0.248 4.248 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.099 0.901 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.212 -12.570 -6.491 14.319 hybrid contribution -0.610 0.827 0.072 1.030 sum -2.822 -11.743 -6.419 13.677 Atomic orbital electron populations 1.69827 1.07563 1.29164 1.35506 1.25893 0.94689 1.01207 0.92267 0.86402 0.80174 0.80365 0.79962 1.18853 1.20400 1.19043 1.19560 0.98105 0.91378 1.40420 0.90588 1.17598 0.91072 0.91967 0.88394 1.21263 0.99396 0.96611 1.01250 1.20496 0.98376 0.92882 0.99506 1.18816 1.01530 0.92206 1.07873 1.20876 0.94350 0.95413 0.90912 1.65437 1.54338 1.00022 1.02067 1.23065 0.98630 0.97508 0.89755 1.22318 1.01859 0.94720 0.97482 1.22257 1.01799 0.96965 0.94185 1.22178 0.95622 0.90166 0.94063 0.93752 1.22183 1.00544 0.91085 1.00757 1.23002 1.00922 1.05061 0.93121 1.22897 1.03454 0.95346 1.00136 1.20304 0.94983 0.96177 0.97417 1.20958 1.03700 0.93001 1.07134 0.90937 0.86638 0.90089 0.95813 0.91598 0.89623 0.94477 0.91178 0.91914 0.90975 0.92060 0.87005 0.88945 0.89195 0.89190 0.89009 0.89622 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.80 10.95 55.55 0.61 -20.19 16 2 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 3 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.55 9.05 -37.74 -0.34 -12.90 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.11 3.04 5.57 -106.83 -0.60 2.44 16 10 C -0.17 -4.35 8.70 -38.88 -0.34 -4.69 16 11 C -0.09 -2.20 8.90 -39.66 -0.35 -2.55 16 12 C -0.20 -4.46 5.22 -104.33 -0.54 -5.00 16 13 C 0.11 2.02 4.92 -4.97 -0.02 2.00 16 14 N -0.49 -8.13 5.01 -223.47 -1.12 -9.25 16 15 C 0.04 0.59 5.71 -2.12 -0.01 0.58 16 16 C -0.13 -1.55 7.00 -25.35 -0.18 -1.73 16 17 C -0.11 -1.32 6.33 -25.35 -0.16 -1.48 16 18 C 0.09 1.18 2.44 -66.07 -0.16 1.02 16 19 H 0.04 0.60 7.81 -51.93 -0.41 0.20 16 20 C -0.13 -1.57 4.96 -90.62 -0.45 -2.02 16 21 C -0.18 -2.04 10.19 -26.73 -0.27 -2.31 16 22 C -0.18 -1.81 10.01 -26.73 -0.27 -2.07 16 23 C -0.07 -1.61 9.67 -39.66 -0.38 -1.99 16 24 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 25 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 26 H 0.12 3.14 6.16 -52.48 -0.32 2.81 16 27 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.02 0.42 7.71 -51.93 -0.40 0.02 16 29 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 30 H 0.09 1.49 7.90 -51.93 -0.41 1.08 16 31 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -27.21 338.86 -11.94 -39.15 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.95 Total: 6.29 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: -4.55 Total: -34.96 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: -0.51 Total: -29.44 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.21 -11.94 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612069909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.648 kcal (2) G-P(sol) polarization free energy of solvation -27.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds