Wall clock time and date at job start Mon Mar 30 2020 01:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 119.99792 * 2 1 4 4 H 1.48507 * 109.47166 * 270.00002 * 3 2 1 5 5 H 1.48502 * 109.47531 * 29.99837 * 3 2 1 6 6 H 1.48498 * 109.47474 * 150.00221 * 3 2 1 7 7 C 1.39942 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00054 * 197.86687 * 7 2 1 9 9 C 1.41390 * 119.99755 * 17.86515 * 7 2 1 10 10 C 1.40716 * 120.24208 * 204.39247 * 9 7 2 11 11 C 1.37623 * 119.74623 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.24423 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.74682 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.46676 * 90.00327 * 13 12 11 15 15 C 1.47441 * 111.00360 * 69.87405 * 14 13 12 16 16 C 1.54316 * 107.23279 * 123.25183 * 15 14 13 17 17 C 1.55139 * 103.02102 * 22.28765 * 16 15 14 18 18 C 1.47853 * 110.99717 * 190.71597 * 14 13 12 19 19 H 1.09002 * 110.37295 * 332.46951 * 18 14 13 20 20 C 1.52995 * 110.37356 * 94.80516 * 18 14 13 21 21 C 1.52998 * 117.50312 * 248.74918 * 20 18 14 22 22 C 1.52999 * 117.50292 * 180.08852 * 20 18 14 23 23 C 1.38629 * 120.50456 * 0.27805 * 12 11 10 24 24 C 1.37616 * 120.24713 * 359.44248 * 23 12 11 25 25 H 0.97000 * 120.00413 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12947 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.87992 * 180.02562 * 11 10 9 28 28 H 1.08994 * 109.47106 * 330.00342 * 13 12 11 29 29 H 1.09002 * 109.47145 * 209.99757 * 13 12 11 30 30 H 1.09001 * 109.88989 * 242.66205 * 15 14 13 31 31 H 1.09005 * 109.88733 * 3.85197 * 15 14 13 32 32 H 1.08999 * 110.70399 * 140.66567 * 16 15 14 33 33 H 1.08998 * 110.71124 * 263.72833 * 16 15 14 34 34 H 1.09002 * 110.99161 * 82.43366 * 17 16 15 35 35 H 1.09000 * 110.99139 * 206.21389 * 17 16 15 36 36 H 1.09001 * 115.55390 * 34.41622 * 20 18 14 37 37 H 1.09002 * 117.49564 * 359.97438 * 21 20 18 38 38 H 1.08997 * 117.50377 * 145.01987 * 21 20 18 39 39 H 1.08998 * 117.50433 * 214.98237 * 22 20 18 40 40 H 1.09005 * 117.49451 * 359.97438 * 22 20 18 41 41 H 1.08004 * 119.88069 * 179.70607 * 23 12 11 42 42 H 1.08005 * 120.13040 * 180.27284 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6528 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2875 9 6 1.3522 -2.4070 -0.3746 10 6 1.8258 -3.6497 0.0853 11 6 1.1793 -4.8066 -0.2857 12 6 0.0652 -4.7507 -1.1089 13 6 -0.6345 -6.0245 -1.5077 14 7 -1.6795 -6.3378 -0.5239 15 6 -2.7946 -5.3774 -0.6134 16 6 -4.0804 -6.1920 -0.8673 17 6 -3.7092 -7.6038 -0.3420 18 6 -2.2137 -7.7003 -0.7342 19 1 -2.1136 -7.9899 -1.7803 20 6 -1.4899 -8.7014 0.1683 21 6 -0.5726 -9.7245 -0.5045 22 6 -1.9157 -10.1683 0.0804 23 6 -0.4071 -3.5324 -1.5721 24 6 0.2202 -2.3625 -1.2093 25 1 -0.4851 0.8400 0.0004 26 1 2.6927 -3.6954 0.7277 27 1 1.5407 -5.7615 0.0664 28 1 0.0877 -6.8401 -1.5429 29 1 -1.0875 -5.8977 -2.4910 30 1 -2.8842 -4.8250 0.3220 31 1 -2.6239 -4.6869 -1.4395 32 1 -4.9163 -5.7784 -0.3032 33 1 -4.3132 -6.2229 -1.9317 34 1 -3.8338 -7.6633 0.7393 35 1 -4.2955 -8.3737 -0.8435 36 1 -1.1897 -8.3222 1.1452 37 1 -0.4852 -9.6847 -1.5903 38 1 0.3308 -10.0187 0.0298 39 1 -1.8954 -10.7543 0.9993 40 1 -2.7119 -10.4201 -0.6202 41 1 -1.2730 -3.5010 -2.2168 42 1 -0.1520 -1.4141 -1.5677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612069910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:08 Heat of formation + Delta-G solvation = 25.717252 kcal Electronic energy + Delta-G solvation = -20448.172163 eV Core-core repulsion = 17585.269630 eV Total energy + Delta-G solvation = -2862.902533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57866 -39.19736 -37.25173 -35.70094 -33.53392 -31.34122 -30.97989 -29.65289 -27.94046 -25.25520 -23.40201 -23.20906 -22.82861 -22.00571 -21.15332 -20.65217 -19.20808 -17.25475 -17.16949 -16.75152 -16.15498 -15.83920 -15.52145 -15.40446 -14.81937 -14.37857 -14.07927 -13.87841 -13.80333 -13.72308 -13.31464 -13.12068 -12.84252 -12.70769 -12.54121 -12.37938 -12.18532 -12.03613 -12.00606 -11.87175 -11.52812 -11.41548 -11.20541 -11.04667 -10.99272 -10.66077 -9.34730 -9.23823 -9.07535 -8.62364 -6.31856 0.96108 1.17486 1.37302 1.50653 1.51530 2.21000 2.67047 2.90562 3.24308 3.72570 3.79384 3.86000 4.02838 4.11001 4.22050 4.24132 4.31407 4.36341 4.40667 4.55160 4.63909 4.67234 4.76918 4.80464 4.84382 4.96172 4.98847 5.04698 5.06626 5.12494 5.16928 5.22636 5.32084 5.33732 5.39190 5.45442 5.49975 5.72631 5.98153 6.11472 6.14930 6.32845 6.35572 6.41792 6.72175 6.96064 7.06258 8.34556 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032302 B = 0.004019 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.600973 B = 6965.251563 C = 7538.009353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.245 4.245 11 C -0.073 4.073 12 C -0.192 4.192 13 C 0.126 3.874 14 N -0.532 5.532 15 C 0.043 3.957 16 C -0.136 4.136 17 C -0.111 4.111 18 C 0.101 3.899 19 H 0.053 0.947 20 C -0.144 4.144 21 C -0.186 4.186 22 C -0.160 4.160 23 C -0.095 4.095 24 C -0.189 4.189 25 H 0.287 0.713 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -13.948 -2.433 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.264 4.264 11 C -0.092 4.092 12 C -0.193 4.193 13 C -0.001 4.001 14 N -0.256 5.256 15 C -0.085 4.085 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.007 4.007 19 H 0.071 0.929 20 C -0.163 4.163 21 C -0.223 4.223 22 C -0.197 4.197 23 C -0.114 4.114 24 C -0.209 4.209 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.147 -13.767 -1.933 15.631 hybrid contribution 0.244 1.183 -0.552 1.328 sum -6.903 -12.584 -2.485 14.567 Atomic orbital electron populations 1.69888 1.09001 1.30405 1.35950 1.26742 0.95478 1.04449 0.91224 0.85210 0.79060 0.75938 0.79510 1.18653 1.19180 1.18289 1.19834 0.98318 0.92698 1.42564 0.90915 1.17942 0.91998 0.92984 0.89376 1.21161 1.04469 0.93318 1.07495 1.20600 0.95339 0.96549 0.96718 1.19292 0.99748 0.93799 1.06491 1.20749 0.93238 0.94461 0.91643 1.63405 1.10450 1.01933 1.49818 1.22737 0.90324 0.95111 1.00308 1.22782 0.97090 0.95871 1.01724 1.22647 0.93887 0.96546 1.01788 1.22151 0.93935 0.87951 0.96674 0.92856 1.22082 1.03716 0.90195 1.00325 1.23053 0.94839 1.04070 1.00378 1.22989 0.97888 0.95452 1.03378 1.20733 0.98253 0.92654 0.99732 1.21234 1.00325 0.96934 1.02375 0.90243 0.88890 0.87232 0.90747 0.95155 0.93153 0.93666 0.89916 0.90805 0.90865 0.88876 0.89086 0.88909 0.88852 0.87948 0.87802 0.88242 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.62 10.95 21.83 0.24 -44.38 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.98 39.38 29.59 68.60 2.03 41.41 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.50 -28.37 9.05 23.46 0.21 -28.15 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.08 4.47 5.58 -21.29 -0.12 4.35 16 10 C -0.24 -12.67 9.80 22.73 0.22 -12.44 16 11 C -0.07 -3.37 9.67 22.22 0.21 -3.16 16 12 C -0.19 -8.37 5.13 -19.67 -0.10 -8.47 16 13 C 0.13 4.39 4.74 85.56 0.41 4.79 16 14 N -0.53 -17.16 4.80 -865.15 -4.15 -21.32 16 15 C 0.04 1.37 6.26 86.65 0.54 1.92 16 16 C -0.14 -3.13 6.94 31.77 0.22 -2.91 16 17 C -0.11 -2.29 6.31 31.98 0.20 -2.09 16 18 C 0.10 2.48 2.57 45.38 0.12 2.60 16 19 H 0.05 1.28 7.64 -2.39 -0.02 1.26 16 20 C -0.14 -3.32 5.44 -10.80 -0.06 -3.38 16 21 C -0.19 -3.71 10.19 30.62 0.31 -3.40 16 22 C -0.16 -2.71 10.05 30.62 0.31 -2.40 16 23 C -0.10 -4.51 8.70 22.22 0.19 -4.31 16 24 C -0.19 -10.31 8.70 22.73 0.20 -10.12 16 25 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 26 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.07 2.43 8.01 -2.39 -0.02 2.41 16 29 H 0.03 1.01 7.90 -2.39 -0.02 0.99 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.56 5.49 -2.38 -0.01 1.54 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.10 4.27 6.92 -2.91 -0.02 4.25 16 42 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 Total: -1.00 -60.68 336.66 2.40 -58.28 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.98 Total: 30.88 kcal Atomic # 6 Polarization: -68.18 SS G_CDS: 3.31 Total: -64.87 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -3.92 Total: -65.70 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -60.68 2.40 -58.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612069910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.997 kcal (2) G-P(sol) polarization free energy of solvation -60.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds