Wall clock time and date at job start Mon Mar 30 2020 01:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47119 * 240.00254 * 3 2 1 5 5 H 1.48504 * 109.46608 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47016 * 119.99487 * 3 2 1 7 7 C 1.39941 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00225 * 162.31091 * 7 2 1 9 9 C 1.41397 * 120.00269 * 342.03833 * 7 2 1 10 10 C 1.40714 * 120.24028 * 335.58952 * 9 7 2 11 11 C 1.37623 * 119.74680 * 179.69581 * 10 9 7 12 12 C 1.38634 * 120.24245 * 0.57982 * 11 10 9 13 13 C 1.50706 * 119.74762 * 179.69444 * 12 11 10 14 14 N 1.46898 * 109.47019 * 270.02119 * 13 12 11 15 15 C 1.46821 * 110.99885 * 294.67456 * 14 13 12 16 16 C 1.53256 * 109.43434 * 170.77206 * 15 14 13 17 17 C 1.53224 * 108.61905 * 55.59315 * 16 15 14 18 18 C 1.52738 * 117.80591 * 94.12037 * 17 16 15 19 19 C 1.52747 * 117.80390 * 163.12189 * 17 16 15 20 20 C 1.53216 * 114.75826 * 308.61397 * 17 16 15 21 21 C 1.46812 * 110.99792 * 170.00060 * 14 13 12 22 22 C 1.38634 * 120.50536 * 359.71118 * 12 11 10 23 23 C 1.37624 * 120.24794 * 359.97438 * 22 12 11 24 24 H 0.97009 * 120.00125 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.12771 * 359.96969 * 10 9 7 26 26 H 1.08002 * 119.88023 * 180.31477 * 11 10 9 27 27 H 1.08994 * 109.46817 * 30.02556 * 13 12 11 28 28 H 1.09000 * 109.46929 * 150.02048 * 13 12 11 29 29 H 1.08997 * 109.48026 * 290.76212 * 15 14 13 30 30 H 1.09003 * 109.47395 * 50.78380 * 15 14 13 31 31 H 1.09000 * 109.61346 * 295.85093 * 16 15 14 32 32 H 1.08999 * 109.75567 * 175.41639 * 16 15 14 33 33 H 1.08999 * 117.50185 * 215.24602 * 18 17 16 34 34 H 1.08993 * 117.50451 * 0.30172 * 18 17 16 35 35 H 1.08998 * 117.50903 * 359.68881 * 19 17 16 36 36 H 1.08994 * 117.50485 * 144.72111 * 19 17 16 37 37 H 1.09003 * 109.61273 * 291.64808 * 20 17 16 38 38 H 1.08997 * 109.75793 * 171.21112 * 20 17 16 39 39 H 1.08996 * 109.47771 * 309.21744 * 21 14 13 40 40 H 1.09006 * 109.47563 * 69.23631 * 21 14 13 41 41 H 1.08002 * 119.87951 * 179.97438 * 22 12 11 42 42 H 1.07997 * 120.12719 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0496 -1.2342 -0.2836 9 6 1.3527 -2.4065 0.3787 10 6 0.2231 -2.3605 1.2165 11 6 -0.4105 -3.5290 1.5732 12 6 0.0673 -4.7489 1.1199 13 6 -0.6311 -6.0220 1.5229 14 7 -0.0424 -6.5301 2.7692 15 6 1.3555 -6.9303 2.5658 16 6 2.0014 -7.2342 3.9219 17 6 1.1598 -8.2960 4.6376 18 6 1.5699 -9.7584 4.4757 19 6 1.7982 -9.0411 5.8083 20 6 -0.3366 -7.9782 4.7232 21 6 -0.8439 -7.6302 3.3194 22 6 1.1830 -4.8066 0.2989 23 6 1.8286 -3.6503 -0.0756 24 1 -0.4851 0.8401 -0.0004 25 1 -0.1478 -1.4115 1.5748 26 1 -1.2807 -3.4958 2.2120 27 1 -1.6913 -5.8216 1.6771 28 1 -0.5129 -6.7663 0.7353 29 1 1.3910 -7.8211 1.9386 30 1 1.8981 -6.1204 2.0781 31 1 2.0335 -6.3260 4.5237 32 1 3.0137 -7.6097 3.7720 33 1 0.7745 -10.5025 4.4344 34 1 2.4451 -9.9707 3.8618 35 1 2.8238 -8.7817 6.0711 36 1 1.1532 -9.3129 6.6438 37 1 -0.4929 -7.1298 5.3895 38 1 -0.8764 -8.8458 5.1026 39 1 -1.8889 -7.3256 3.3758 40 1 -0.7541 -8.5037 2.6735 41 1 1.5469 -5.7624 -0.0480 42 1 2.6978 -3.6976 -0.7149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612110393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:25 Heat of formation + Delta-G solvation = 21.579693 kcal Electronic energy + Delta-G solvation = -20418.277648 eV Core-core repulsion = 17555.195696 eV Total energy + Delta-G solvation = -2863.081951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58971 -39.36416 -37.24789 -35.47360 -32.66781 -31.93629 -31.11510 -30.39770 -27.75013 -25.16746 -24.19995 -23.37300 -22.81097 -22.46312 -21.42931 -19.42544 -19.18201 -17.18800 -16.78543 -16.39589 -16.16659 -15.95661 -15.66026 -15.20977 -15.01245 -14.60413 -14.31379 -14.07347 -13.78399 -13.52013 -13.31164 -13.18422 -12.94575 -12.65532 -12.62569 -12.42035 -12.37474 -12.14657 -12.07213 -11.98407 -11.49415 -11.25282 -11.18742 -10.98057 -10.80938 -10.48248 -9.31330 -9.25644 -9.01121 -8.61949 -6.31031 0.97862 1.17121 1.37795 1.48899 1.53876 2.21439 2.68959 2.90480 3.22011 3.72499 3.80941 3.87592 4.02516 4.08315 4.19972 4.31493 4.33853 4.50817 4.56171 4.59760 4.64065 4.68666 4.74884 4.81253 4.84049 4.93932 5.01169 5.06745 5.08298 5.13687 5.17627 5.21501 5.30757 5.37345 5.38311 5.42295 5.49372 5.73447 5.97583 6.12242 6.20257 6.34099 6.39955 6.42114 6.73457 6.96659 7.07008 8.35071 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.003758 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.813880 B = 7448.869770 C = 7669.583293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.080 3.920 10 C -0.191 4.191 11 C -0.086 4.086 12 C -0.192 4.192 13 C 0.126 3.874 14 N -0.545 5.545 15 C 0.061 3.939 16 C -0.073 4.073 17 C -0.135 4.135 18 C -0.170 4.170 19 C -0.169 4.169 20 C -0.072 4.072 21 C 0.059 3.941 22 C -0.082 4.082 23 C -0.244 4.244 24 H 0.287 0.713 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.109 0.891 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 -14.415 8.242 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.078 3.922 10 C -0.210 4.210 11 C -0.104 4.104 12 C -0.194 4.194 13 C -0.001 4.001 14 N -0.270 5.270 15 C -0.066 4.066 16 C -0.111 4.111 17 C -0.135 4.135 18 C -0.207 4.207 19 C -0.206 4.206 20 C -0.109 4.109 21 C -0.069 4.069 22 C -0.101 4.101 23 C -0.263 4.263 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.127 0.873 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.311 -13.907 8.563 16.334 hybrid contribution 0.372 0.453 -0.882 1.059 sum 0.061 -13.454 7.681 15.492 Atomic orbital electron populations 1.69878 1.08989 1.30510 1.35835 1.26737 0.95482 1.04441 0.91219 0.85281 0.78825 0.75754 0.80007 1.18354 1.19098 1.18605 1.19810 0.98287 0.92755 1.42640 0.90878 1.17933 0.91951 0.92996 0.89302 1.21257 1.00321 0.97035 1.02414 1.20709 0.98632 0.92489 0.98610 1.19271 1.00350 0.93927 1.05846 1.20628 0.97424 0.92493 0.89535 1.61745 1.02360 1.34668 1.28249 1.22028 0.89432 0.98277 0.96905 1.21126 0.97419 0.97607 0.94959 1.21454 0.95841 0.93306 1.02927 1.23065 1.03387 0.94043 1.00235 1.23017 1.02001 1.03553 0.92006 1.21158 0.92374 1.01410 0.95989 1.22118 0.97315 0.91641 0.95813 1.20613 0.95366 0.96433 0.97641 1.21132 1.04347 0.93251 1.07598 0.90200 0.88461 0.88052 0.90711 0.95028 0.95224 0.91941 0.92551 0.90944 0.88063 0.88980 0.88735 0.87858 0.91837 0.89708 0.90386 0.94884 0.87304 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.41 10.96 21.82 0.24 -44.17 16 2 C 0.04 1.86 5.14 85.26 0.44 2.30 16 3 Si 0.98 39.20 29.59 68.60 2.03 41.23 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.51 -28.19 9.05 23.46 0.21 -27.98 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 10 C -0.19 -10.39 8.70 22.73 0.20 -10.19 16 11 C -0.09 -4.08 9.67 22.22 0.21 -3.87 16 12 C -0.19 -8.24 4.91 -19.67 -0.10 -8.34 16 13 C 0.13 4.28 5.12 85.56 0.44 4.72 16 14 N -0.55 -16.96 4.58 -900.18 -4.12 -21.08 16 15 C 0.06 1.86 5.24 86.40 0.45 2.31 16 16 C -0.07 -1.91 5.87 30.76 0.18 -1.73 16 17 C -0.14 -2.89 2.02 -52.21 -0.11 -2.99 16 18 C -0.17 -2.99 9.92 30.53 0.30 -2.68 16 19 C -0.17 -2.93 10.00 30.53 0.31 -2.62 16 20 C -0.07 -1.52 5.87 30.75 0.18 -1.34 16 21 C 0.06 1.42 5.49 86.41 0.47 1.90 16 22 C -0.08 -3.62 7.79 22.22 0.17 -3.44 16 23 C -0.24 -12.30 9.80 22.73 0.22 -12.08 16 24 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 25 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 26 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.07 2.40 7.88 -2.39 -0.02 2.38 16 28 H 0.03 1.02 8.07 -2.39 -0.02 1.00 16 29 H 0.03 0.85 8.11 -2.39 -0.02 0.83 16 30 H 0.06 2.23 5.50 -2.39 -0.01 2.21 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 39 H 0.08 1.77 7.95 -2.39 -0.02 1.75 16 40 H 0.03 0.77 8.12 -2.38 -0.02 0.75 16 41 H 0.11 4.17 7.89 -2.91 -0.02 4.15 16 42 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -59.48 333.62 2.60 -56.88 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.98 Total: 28.79 kcal Atomic # 6 Polarization: -65.12 SS G_CDS: 3.47 Total: -61.65 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -3.88 Total: -65.25 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -59.48 2.60 -56.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612110393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.458 kcal (2) G-P(sol) polarization free energy of solvation -59.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds