Wall clock time and date at job start Mon Mar 30 2020 01:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48503 * 109.46934 * 239.99859 * 3 2 1 5 5 H 1.48497 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 120.00092 * 3 2 1 7 7 C 1.39863 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99918 * 193.05755 * 7 2 1 9 9 C 1.41142 * 119.99903 * 13.05452 * 7 2 1 10 10 C 1.40878 * 120.15275 * 208.35706 * 9 7 2 11 11 C 1.36341 * 119.83387 * 180.02562 * 10 9 7 12 12 C 1.39563 * 120.16374 * 359.97438 * 11 10 9 13 13 N 1.38855 * 119.84764 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00462 * 180.28114 * 13 12 11 15 15 H 1.09001 * 112.87618 * 23.81428 * 14 13 12 16 16 C 1.53924 * 113.64811 * 252.39454 * 14 13 12 17 17 C 1.53918 * 87.22087 * 220.64322 * 16 14 13 18 18 C 1.53012 * 113.65344 * 155.13316 * 14 13 12 19 19 C 1.53557 * 115.13417 * 22.64924 * 18 14 13 20 20 C 1.55055 * 103.99296 * 206.87437 * 19 18 14 21 21 C 1.54954 * 102.85931 * 37.29489 * 20 19 18 22 22 C 1.53178 * 115.37082 * 256.64569 * 18 14 13 23 23 C 1.39575 * 120.31295 * 0.25993 * 12 11 10 24 24 C 1.36340 * 120.15668 * 359.47472 * 23 12 11 25 25 H 0.97007 * 120.00306 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08741 * 0.04797 * 10 9 7 27 27 H 1.08004 * 119.92118 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99698 * 0.02562 * 13 12 11 29 29 H 1.08994 * 113.59242 * 335.22501 * 16 14 13 30 30 H 1.08999 * 113.59437 * 106.06022 * 16 14 13 31 31 H 1.08999 * 113.65299 * 270.37124 * 17 16 14 32 32 H 1.09004 * 113.65524 * 139.34992 * 17 16 14 33 33 H 1.09008 * 110.52294 * 325.50279 * 19 18 14 34 34 H 1.09007 * 110.52448 * 88.24419 * 19 18 14 35 35 H 1.09007 * 110.73097 * 278.95980 * 20 19 18 36 36 H 1.08999 * 110.74071 * 155.64104 * 20 19 18 37 37 H 1.08992 * 110.48511 * 203.76887 * 21 20 19 38 38 H 1.09001 * 110.58953 * 81.19269 * 21 20 19 39 39 H 1.09007 * 110.09070 * 248.85775 * 22 18 14 40 40 H 1.08997 * 110.09508 * 10.38773 * 22 18 14 41 41 H 1.08002 * 119.91693 * 179.72463 * 23 12 11 42 42 H 1.08005 * 120.07581 * 180.27580 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0674 -1.2232 0.2119 9 6 1.3300 -2.4179 -0.2750 10 6 1.7931 -3.6308 0.2718 11 6 1.1331 -4.7927 0.0009 12 6 0.0012 -4.7823 -0.8154 13 7 -0.6656 -5.9695 -1.0874 14 6 -1.8505 -5.9635 -1.9487 15 1 -1.8772 -5.1105 -2.6268 16 6 -3.1687 -6.1907 -1.1871 17 6 -3.6047 -7.0870 -2.3600 18 6 -2.1156 -7.3038 -2.6376 19 6 -1.4951 -8.5265 -1.9461 20 6 -1.2891 -9.5441 -3.0977 21 6 -0.8674 -8.6414 -4.2844 22 6 -1.7274 -7.3690 -4.1179 23 6 -0.4604 -3.5850 -1.3645 24 6 0.1864 -2.4149 -1.0977 25 1 -0.4851 0.8401 -0.0004 26 1 2.6685 -3.6403 0.9043 27 1 1.4872 -5.7235 0.4190 28 1 -0.3446 -6.8035 -0.7100 29 1 -3.0428 -6.7308 -0.2488 30 1 -3.7715 -5.2890 -1.0796 31 1 -4.1235 -6.5482 -3.1528 32 1 -4.1276 -7.9913 -2.0485 33 1 -0.5393 -8.2646 -1.4921 34 1 -2.1773 -8.9293 -1.1975 35 1 -2.2192 -10.0666 -3.3219 36 1 -0.4976 -10.2516 -2.8507 37 1 -1.0892 -9.1301 -5.2331 38 1 0.1927 -8.3960 -4.2215 39 1 -2.6220 -7.4380 -4.7370 40 1 -1.1494 -6.4867 -4.3927 41 1 -1.3345 -3.5850 -1.9989 42 1 -0.1745 -1.4885 -1.5197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694353410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:40 Heat of formation + Delta-G solvation = 30.806113 kcal Electronic energy + Delta-G solvation = -20548.619470 eV Core-core repulsion = 17685.937606 eV Total energy + Delta-G solvation = -2862.681864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37740 -37.63382 -35.27165 -33.93366 -32.22663 -29.46762 -28.86477 -28.42786 -26.77889 -25.12433 -23.50762 -21.92137 -20.99946 -20.60947 -19.94754 -17.88706 -17.16679 -16.37871 -15.95352 -15.45099 -14.96143 -14.63054 -13.89483 -13.50194 -13.36803 -13.02707 -12.89890 -12.61484 -12.37311 -11.96753 -11.84132 -11.64193 -11.57815 -11.12639 -11.06744 -11.01012 -10.97499 -10.92302 -10.58080 -10.53098 -10.32516 -10.05120 -9.90810 -9.63973 -9.22787 -9.15657 -8.45856 -7.46178 -6.55018 -6.31020 -4.01451 2.96448 3.13128 3.16896 3.20270 3.37783 4.09578 4.27561 4.50323 4.56371 4.64177 4.81953 4.97045 5.09280 5.22257 5.28034 5.42916 5.57887 5.64233 5.72707 5.80394 5.82463 5.84136 5.86366 5.89004 6.04680 6.14810 6.20464 6.24520 6.30475 6.31376 6.36263 6.47925 6.57587 6.96305 6.99986 7.23973 7.40485 7.60600 7.73243 7.88036 8.18988 8.33801 8.54842 8.74624 8.84707 9.10695 9.19073 10.45560 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034215 B = 0.003887 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.157466 B = 7201.908620 C = 7421.051270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.469 4.469 8 H 0.071 0.929 9 C 0.073 3.927 10 C -0.182 4.182 11 C -0.164 4.164 12 C 0.098 3.902 13 N -0.746 5.746 14 C 0.157 3.843 15 H 0.100 0.900 16 C -0.160 4.160 17 C -0.129 4.129 18 C -0.092 4.092 19 C -0.102 4.102 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.167 4.167 24 C -0.117 4.117 25 H 0.275 0.725 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.384 0.616 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 -13.565 -6.069 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.501 4.501 8 H 0.089 0.911 9 C 0.070 3.930 10 C -0.203 4.203 11 C -0.186 4.186 12 C 0.001 3.999 13 N -0.380 5.380 14 C 0.049 3.951 15 H 0.117 0.883 16 C -0.200 4.200 17 C -0.167 4.167 18 C -0.093 4.093 19 C -0.140 4.140 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.189 4.189 24 C -0.137 4.137 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.219 0.781 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.996 -13.286 -6.153 15.822 hybrid contribution 0.386 0.540 0.263 0.715 sum -5.610 -12.746 -5.890 15.120 Atomic orbital electron populations 1.69821 1.07212 1.28493 1.38829 1.25759 0.94721 1.00708 0.92891 0.86442 0.80007 0.80933 0.79628 1.19190 1.20629 1.19345 1.19320 0.96162 0.90845 1.43773 0.91127 1.17481 0.92602 0.92046 0.90867 1.20579 1.02246 0.93036 1.04411 1.19806 0.97710 0.97136 1.03941 1.17411 0.94916 0.85864 1.01715 1.44015 1.30885 1.06731 1.56394 1.22032 0.84910 0.96058 0.92079 0.88266 1.23566 0.98948 0.99669 0.97787 1.22793 0.95099 0.99896 0.98875 1.22424 0.95761 0.96004 0.95161 1.22069 1.00765 0.93901 0.97275 1.22496 1.00735 0.97295 0.95415 1.22372 0.99990 0.95906 0.97863 1.22060 0.99358 0.98177 0.95235 1.20132 1.01642 0.92300 1.04844 1.20947 0.97763 0.96069 0.98887 0.91404 0.89110 0.89728 0.78068 0.90356 0.91654 0.90270 0.91580 0.90946 0.91710 0.91812 0.91904 0.92186 0.91670 0.91926 0.91438 0.89354 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.01 10.93 55.54 0.61 -21.41 16 2 C 0.07 1.92 5.21 -17.34 -0.09 1.83 16 3 Si 0.90 19.58 29.58 -169.99 -5.03 14.55 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.47 -12.94 9.04 -37.87 -0.34 -13.28 16 8 H 0.07 1.88 7.88 -52.48 -0.41 1.46 16 9 C 0.07 1.99 5.55 -106.80 -0.59 1.40 16 10 C -0.18 -4.58 9.74 -39.27 -0.38 -4.96 16 11 C -0.16 -3.72 9.82 -39.77 -0.39 -4.11 16 12 C 0.10 2.14 6.67 -83.69 -0.56 1.58 16 13 N -0.75 -12.96 5.36 -51.56 -0.28 -13.24 16 14 C 0.16 2.36 3.46 -67.44 -0.23 2.12 16 15 H 0.10 1.62 6.06 -51.93 -0.31 1.31 16 16 C -0.16 -2.16 7.71 -25.78 -0.20 -2.36 16 17 C -0.13 -1.43 7.14 -26.24 -0.19 -1.62 16 18 C -0.09 -1.10 1.11 -154.11 -0.17 -1.27 16 19 C -0.10 -1.13 5.68 -25.36 -0.14 -1.27 16 20 C -0.12 -1.18 6.91 -24.61 -0.17 -1.35 16 21 C -0.12 -1.27 6.84 -24.93 -0.17 -1.45 16 22 C -0.11 -1.26 6.33 -25.87 -0.16 -1.42 16 23 C -0.17 -3.94 9.19 -39.77 -0.37 -4.31 16 24 C -0.12 -3.09 8.60 -39.27 -0.34 -3.43 16 25 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 26 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 27 H 0.08 1.70 8.06 -52.48 -0.42 1.27 16 28 H 0.38 6.07 6.22 -40.82 -0.25 5.81 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 32 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16 33 H 0.07 0.87 5.87 -51.92 -0.30 0.56 16 34 H 0.06 0.67 7.88 -51.93 -0.41 0.27 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 40 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 41 H 0.09 1.90 6.01 -52.49 -0.32 1.59 16 42 H 0.12 3.24 6.26 -52.48 -0.33 2.91 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -27.88 327.58 -10.78 -38.66 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.52 Total: 10.41 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: -4.50 Total: -33.90 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.33 Total: -34.65 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.88 -10.78 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694353410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.462 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds