Wall clock time and date at job start Mon Mar 30 2020 01:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48503 * 109.46934 * 239.99859 * 3 2 1 5 5 H 1.48497 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 120.00092 * 3 2 1 7 7 C 1.39863 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99918 * 193.05755 * 7 2 1 9 9 C 1.41142 * 119.99903 * 13.05452 * 7 2 1 10 10 C 1.40878 * 120.15275 * 208.35706 * 9 7 2 11 11 C 1.36341 * 119.83387 * 180.02562 * 10 9 7 12 12 C 1.39563 * 120.16374 * 359.97438 * 11 10 9 13 13 N 1.38855 * 119.84764 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00462 * 180.28114 * 13 12 11 15 15 H 1.09001 * 112.87618 * 23.81428 * 14 13 12 16 16 C 1.53924 * 113.64811 * 252.39454 * 14 13 12 17 17 C 1.53918 * 87.22087 * 220.64322 * 16 14 13 18 18 C 1.53012 * 113.65344 * 155.13316 * 14 13 12 19 19 C 1.53557 * 115.13417 * 22.64924 * 18 14 13 20 20 C 1.55055 * 103.99296 * 206.87437 * 19 18 14 21 21 C 1.54954 * 102.85931 * 37.29489 * 20 19 18 22 22 C 1.53178 * 115.37082 * 256.64569 * 18 14 13 23 23 C 1.39575 * 120.31295 * 0.25993 * 12 11 10 24 24 C 1.36340 * 120.15668 * 359.47472 * 23 12 11 25 25 H 0.97007 * 120.00306 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08741 * 0.04797 * 10 9 7 27 27 H 1.08004 * 119.92118 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99698 * 0.02562 * 13 12 11 29 29 H 1.08994 * 113.59242 * 335.22501 * 16 14 13 30 30 H 1.08999 * 113.59437 * 106.06022 * 16 14 13 31 31 H 1.08999 * 113.65299 * 270.37124 * 17 16 14 32 32 H 1.09004 * 113.65524 * 139.34992 * 17 16 14 33 33 H 1.09008 * 110.52294 * 325.50279 * 19 18 14 34 34 H 1.09007 * 110.52448 * 88.24419 * 19 18 14 35 35 H 1.09007 * 110.73097 * 278.95980 * 20 19 18 36 36 H 1.08999 * 110.74071 * 155.64104 * 20 19 18 37 37 H 1.08992 * 110.48511 * 203.76887 * 21 20 19 38 38 H 1.09001 * 110.58953 * 81.19269 * 21 20 19 39 39 H 1.09007 * 110.09070 * 248.85775 * 22 18 14 40 40 H 1.08997 * 110.09508 * 10.38773 * 22 18 14 41 41 H 1.08002 * 119.91693 * 179.72463 * 23 12 11 42 42 H 1.08005 * 120.07581 * 180.27580 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0674 -1.2232 0.2119 9 6 1.3300 -2.4179 -0.2750 10 6 1.7931 -3.6308 0.2718 11 6 1.1331 -4.7927 0.0009 12 6 0.0012 -4.7823 -0.8154 13 7 -0.6656 -5.9695 -1.0874 14 6 -1.8505 -5.9635 -1.9487 15 1 -1.8772 -5.1105 -2.6268 16 6 -3.1687 -6.1907 -1.1871 17 6 -3.6047 -7.0870 -2.3600 18 6 -2.1156 -7.3038 -2.6376 19 6 -1.4951 -8.5265 -1.9461 20 6 -1.2891 -9.5441 -3.0977 21 6 -0.8674 -8.6414 -4.2844 22 6 -1.7274 -7.3690 -4.1179 23 6 -0.4604 -3.5850 -1.3645 24 6 0.1864 -2.4149 -1.0977 25 1 -0.4851 0.8401 -0.0004 26 1 2.6685 -3.6403 0.9043 27 1 1.4872 -5.7235 0.4190 28 1 -0.3446 -6.8035 -0.7100 29 1 -3.0428 -6.7308 -0.2488 30 1 -3.7715 -5.2890 -1.0796 31 1 -4.1235 -6.5482 -3.1528 32 1 -4.1276 -7.9913 -2.0485 33 1 -0.5393 -8.2646 -1.4921 34 1 -2.1773 -8.9293 -1.1975 35 1 -2.2192 -10.0666 -3.3219 36 1 -0.4976 -10.2516 -2.8507 37 1 -1.0892 -9.1301 -5.2331 38 1 0.1927 -8.3960 -4.2215 39 1 -2.6220 -7.4380 -4.7370 40 1 -1.1494 -6.4867 -4.3927 41 1 -1.3345 -3.5850 -1.9989 42 1 -0.1745 -1.4885 -1.5197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694353410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:40 Heat of formation + Delta-G solvation = 18.171174 kcal Electronic energy + Delta-G solvation = -20549.167362 eV Core-core repulsion = 17685.937606 eV Total energy + Delta-G solvation = -2863.229756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45406 -39.43504 -36.50467 -35.51141 -33.92557 -31.37351 -30.33866 -29.65649 -27.70785 -26.76569 -25.03685 -23.20606 -22.54508 -21.91803 -21.29412 -19.15226 -18.98423 -17.86837 -17.18896 -16.80422 -16.47876 -15.82967 -15.55790 -14.86929 -14.57971 -14.45077 -14.17742 -14.03339 -13.86386 -13.51508 -13.40113 -13.32751 -12.73853 -12.69898 -12.56241 -12.45467 -12.16621 -11.94381 -11.85977 -11.59754 -11.44916 -11.38814 -11.20839 -11.07257 -10.99021 -10.91066 -10.16936 -9.40533 -8.49295 -8.10149 -6.02113 1.11579 1.19478 1.39902 1.51150 1.59125 2.28524 2.86943 2.92659 3.52570 3.62707 3.65497 3.84049 4.01700 4.13353 4.22217 4.37289 4.44612 4.49488 4.57336 4.65123 4.76062 4.78830 4.86885 4.97213 4.98653 5.03015 5.09112 5.10572 5.16225 5.23841 5.26507 5.28831 5.32135 5.46580 5.47594 5.52852 5.55351 5.72236 5.83668 5.97247 6.19527 6.40531 6.69702 6.90127 7.09906 7.16322 7.33391 8.52788 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034215 B = 0.003887 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.157466 B = 7201.908620 C = 7421.051270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.030 3.970 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.032 3.968 10 C -0.190 4.190 11 C -0.172 4.172 12 C 0.120 3.880 13 N -0.735 5.735 14 C 0.137 3.863 15 H 0.082 0.918 16 C -0.160 4.160 17 C -0.114 4.114 18 C -0.082 4.082 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.179 4.179 24 C -0.135 4.135 25 H 0.280 0.720 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.395 0.605 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.103 0.897 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -15.658 -6.522 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.030 3.970 10 C -0.210 4.210 11 C -0.194 4.194 12 C 0.020 3.980 13 N -0.369 5.369 14 C 0.030 3.970 15 H 0.100 0.900 16 C -0.199 4.199 17 C -0.151 4.151 18 C -0.084 4.084 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.151 4.151 23 C -0.201 4.201 24 C -0.155 4.155 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.233 0.767 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.817 -15.435 -6.615 18.124 hybrid contribution 0.561 1.003 0.372 1.208 sum -6.256 -14.432 -6.243 16.924 Atomic orbital electron populations 1.69902 1.08644 1.29598 1.39710 1.26591 0.95540 1.03994 0.91984 0.85324 0.78655 0.76314 0.79736 1.18762 1.19519 1.18700 1.19566 0.96258 0.92203 1.45987 0.91495 1.17798 0.93751 0.93116 0.92373 1.20788 1.02624 0.93314 1.04311 1.20099 0.97693 0.97630 1.03973 1.17519 0.94129 0.86872 0.99469 1.44079 1.31049 1.05605 1.56194 1.22323 0.84577 0.97684 0.92412 0.90019 1.23527 0.97688 1.00011 0.98695 1.22752 0.94643 1.00071 0.97668 1.22367 0.96309 0.94326 0.95349 1.22103 1.00302 0.93798 0.98012 1.22483 1.01764 0.96901 0.94137 1.22377 0.99015 0.95610 0.99146 1.22083 0.99994 0.98004 0.95000 1.20272 1.02143 0.92209 1.05435 1.20863 0.98493 0.96354 0.99787 0.90947 0.88527 0.86603 0.76743 0.90235 0.92606 0.89402 0.89530 0.92073 0.90598 0.90356 0.91046 0.90656 0.92921 0.90397 0.93424 0.87885 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.57 10.93 21.82 0.24 -47.33 16 2 C 0.03 1.60 5.21 85.22 0.44 2.04 16 3 Si 0.98 41.06 29.58 68.60 2.03 43.09 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.51 -29.22 9.04 23.38 0.21 -29.01 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 9 C 0.03 1.85 5.55 -21.27 -0.12 1.73 16 10 C -0.19 -9.73 9.74 22.47 0.22 -9.52 16 11 C -0.17 -7.69 9.82 22.15 0.22 -7.47 16 12 C 0.12 5.18 6.67 38.67 0.26 5.44 16 13 N -0.74 -24.53 5.36 -317.05 -1.70 -26.22 16 14 C 0.14 3.93 3.46 45.31 0.16 4.08 16 15 H 0.08 2.65 6.06 -2.39 -0.01 2.64 16 16 C -0.16 -4.02 7.71 31.21 0.24 -3.78 16 17 C -0.11 -2.17 7.14 30.91 0.22 -1.95 16 18 C -0.08 -1.76 1.11 -51.93 -0.06 -1.82 16 19 C -0.10 -1.98 5.68 31.49 0.18 -1.80 16 20 C -0.12 -1.82 6.91 31.97 0.22 -1.60 16 21 C -0.12 -2.23 6.84 31.76 0.22 -2.01 16 22 C -0.11 -2.33 6.33 31.15 0.20 -2.13 16 23 C -0.18 -8.59 9.19 22.15 0.20 -8.38 16 24 C -0.13 -7.46 8.60 22.47 0.19 -7.27 16 25 H 0.28 14.37 8.30 -92.70 -0.77 13.60 16 26 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.40 11.63 6.22 -92.71 -0.58 11.05 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 32 H 0.09 1.37 8.03 -2.38 -0.02 1.35 16 33 H 0.06 1.30 5.87 -2.38 -0.01 1.29 16 34 H 0.08 1.29 7.88 -2.38 -0.02 1.27 16 35 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.36 7.91 -2.38 -0.02 1.35 16 40 H 0.05 1.17 7.90 -2.39 -0.02 1.15 16 41 H 0.10 4.54 6.01 -2.91 -0.02 4.52 16 42 H 0.10 5.67 6.26 -2.91 -0.02 5.65 16 Total: -1.00 -62.19 327.58 4.00 -58.19 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.43 Total: 35.72 kcal Atomic # 6 Polarization: -66.45 SS G_CDS: 3.00 Total: -63.44 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.46 Total: -73.56 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -62.19 4.00 -58.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694353410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.359 kcal (2) G-P(sol) polarization free energy of solvation -62.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds