Wall clock time and date at job start Mon Mar 30 2020 01:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99629 * 2 1 4 4 H 1.48500 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47136 * 299.99646 * 3 2 1 6 6 H 1.48497 * 109.47437 * 59.99949 * 3 2 1 7 7 C 1.39925 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00353 * 192.95560 * 7 2 1 9 9 C 1.41410 * 119.99655 * 12.96167 * 7 2 1 10 10 C 1.40788 * 120.20639 * 208.24129 * 9 7 2 11 11 C 1.37644 * 119.89673 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.32011 * 359.72355 * 11 10 9 13 13 C 1.39283 * 120.42242 * 0.55389 * 12 11 10 14 14 N 1.39692 * 119.94971 * 179.71954 * 13 12 11 15 15 C 1.46497 * 119.99619 * 359.45315 * 14 13 12 16 16 H 1.09003 * 112.88146 * 23.46525 * 15 14 13 17 17 C 1.53923 * 113.65156 * 252.03221 * 15 14 13 18 18 C 1.53914 * 87.22668 * 220.64974 * 17 15 14 19 19 C 1.53015 * 113.65052 * 154.77666 * 15 14 13 20 20 C 1.53562 * 115.12715 * 22.65055 * 19 15 14 21 21 C 1.55066 * 103.98614 * 206.88014 * 20 19 15 22 22 C 1.54950 * 102.86052 * 37.29810 * 21 20 19 23 23 C 1.53175 * 115.37375 * 256.64839 * 19 15 14 24 24 C 1.38314 * 120.10032 * 359.44841 * 13 12 11 25 25 H 0.97005 * 120.00294 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.05130 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.83777 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.78229 * 180.27736 * 12 11 10 29 29 H 0.96993 * 120.00307 * 179.72646 * 14 13 12 30 30 H 1.08998 * 113.58990 * 335.23901 * 17 15 14 31 31 H 1.09005 * 113.59098 * 106.06301 * 17 15 14 32 32 H 1.09001 * 113.65051 * 270.37492 * 18 17 15 33 33 H 1.08998 * 113.65365 * 139.35426 * 18 17 15 34 34 H 1.08999 * 110.52750 * 325.50383 * 20 19 15 35 35 H 1.09001 * 110.52805 * 88.26082 * 20 19 15 36 36 H 1.09004 * 110.73576 * 278.95257 * 21 20 19 37 37 H 1.08996 * 110.89027 * 155.71420 * 21 20 19 38 38 H 1.09001 * 110.47894 * 203.76481 * 22 21 20 39 39 H 1.08992 * 110.48266 * 81.14084 * 22 21 20 40 40 H 1.08998 * 110.09354 * 248.85395 * 23 19 15 41 41 H 1.09001 * 110.09117 * 10.44097 * 23 19 15 42 42 H 1.08003 * 120.16537 * 180.29506 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2117 0.0005 8 1 3.0674 -1.2236 0.2102 9 6 1.3280 -2.4209 -0.2736 10 6 1.7919 -3.6336 0.2706 11 6 1.1248 -4.8068 0.0000 12 6 -0.0053 -4.7999 -0.8012 13 6 -0.4727 -3.6086 -1.3512 14 7 -1.6099 -3.6139 -2.1624 15 6 -2.3029 -4.8735 -2.4439 16 1 -2.1193 -5.6365 -1.6874 17 6 -2.1129 -5.3737 -3.8871 18 6 -3.6007 -5.7675 -3.8671 19 6 -3.7828 -4.6958 -2.7900 20 6 -4.1675 -3.3045 -3.3136 21 6 -5.6616 -3.1579 -2.9255 22 6 -5.7277 -3.8500 -1.5407 23 6 -4.7660 -5.0518 -1.6707 24 6 0.1842 -2.4196 -1.0907 25 1 -0.4851 0.8401 0.0004 26 1 2.6695 -3.6433 0.9001 27 1 1.4813 -5.7364 0.4183 28 1 -0.5247 -5.7247 -1.0042 29 1 -1.9383 -2.7842 -2.5426 30 1 -1.8813 -4.5797 -4.5971 31 1 -1.4373 -6.2253 -3.9683 32 1 -3.7799 -6.7815 -3.5097 33 1 -4.1242 -5.5461 -4.7972 34 1 -3.5690 -2.5341 -2.8273 35 1 -4.0475 -3.2567 -4.3959 36 1 -6.2994 -3.6719 -3.6446 37 1 -5.9412 -2.1075 -2.8456 38 1 -6.7413 -4.1934 -1.3340 39 1 -5.3870 -3.1716 -0.7586 40 1 -5.3233 -5.9508 -1.9336 41 1 -4.2285 -5.2041 -0.7347 42 1 -0.1801 -1.4946 -1.5128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694472642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:42 Heat of formation + Delta-G solvation = 27.045796 kcal Electronic energy + Delta-G solvation = -20791.193364 eV Core-core repulsion = 17928.348441 eV Total energy + Delta-G solvation = -2862.844923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32344 -37.47936 -35.18395 -33.76575 -32.62432 -29.40116 -28.76599 -27.75910 -26.71819 -25.16854 -23.95665 -21.83067 -20.94752 -20.55512 -19.78542 -17.93789 -17.13440 -16.24719 -15.75008 -15.26275 -14.86548 -14.42475 -14.39453 -13.43909 -13.32002 -13.02729 -12.86317 -12.63032 -12.37864 -12.06067 -11.84397 -11.57520 -11.39939 -11.09929 -11.03753 -10.97661 -10.95255 -10.66965 -10.47425 -10.40736 -10.32342 -10.00422 -9.89006 -9.54522 -9.36630 -9.18741 -8.67364 -7.22478 -6.64634 -6.09300 -4.28007 2.89637 3.13072 3.18789 3.26520 3.35903 4.02471 4.30469 4.56424 4.61860 4.69110 4.79793 5.00347 5.14841 5.26852 5.31937 5.51258 5.65009 5.72179 5.78561 5.83189 5.86500 5.87968 5.90945 5.97687 6.11811 6.17878 6.25436 6.30332 6.32002 6.40259 6.52072 6.54264 6.67857 6.93213 7.16623 7.19641 7.43430 7.50510 7.86850 8.00297 8.15706 8.23483 8.55494 8.76986 8.90227 9.06263 9.16648 10.34275 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.005079 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.373025 B = 5511.214047 C = 6337.734904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.255 4.255 11 C -0.069 4.069 12 C -0.296 4.296 13 C 0.214 3.786 14 N -0.745 5.745 15 C 0.154 3.846 16 H 0.101 0.899 17 C -0.159 4.159 18 C -0.128 4.128 19 C -0.092 4.092 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.110 4.110 24 C -0.225 4.225 25 H 0.275 0.725 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.390 0.610 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 -6.089 -6.380 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.497 4.497 8 H 0.093 0.907 9 C 0.136 3.864 10 C -0.275 4.275 11 C -0.088 4.088 12 C -0.319 4.319 13 C 0.116 3.884 14 N -0.378 5.378 15 C 0.046 3.954 16 H 0.119 0.881 17 C -0.199 4.199 18 C -0.166 4.166 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.249 4.249 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.226 0.774 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.360 -6.093 -6.337 13.587 hybrid contribution 0.198 1.049 -0.060 1.069 sum -10.162 -5.044 -6.396 13.024 Atomic orbital electron populations 1.69856 1.07342 1.28417 1.37004 1.25841 0.94741 1.00932 0.92507 0.86323 0.80955 0.81394 0.78337 1.18558 1.19964 1.20163 1.19567 0.96396 0.90755 1.42952 0.90680 1.17336 0.90321 0.91832 0.86937 1.20898 1.04396 0.93413 1.08823 1.20293 0.95071 0.96182 0.97205 1.19925 1.03726 0.95118 1.13095 1.17698 0.86303 0.94265 0.90167 1.44554 1.29755 1.07228 1.56226 1.22090 0.89838 0.88419 0.95011 0.88149 1.23555 0.95727 1.01094 0.99487 1.22788 0.97154 0.98188 0.98491 1.22415 0.95588 0.95592 0.95689 1.22084 0.95975 0.95901 1.00185 1.22485 0.96379 1.00171 0.96861 1.22377 0.98827 0.97482 0.97488 1.22048 0.96509 0.97733 0.98449 1.20738 1.01991 0.94876 1.07306 0.91416 0.89428 0.89698 0.89594 0.77421 0.90273 0.91752 0.90323 0.91539 0.90666 0.91734 0.91924 0.91825 0.92217 0.91506 0.91994 0.91479 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.14 10.92 55.55 0.61 -20.53 16 2 C 0.08 1.96 5.21 -17.35 -0.09 1.87 16 3 Si 0.90 19.21 29.58 -169.99 -5.03 14.18 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.47 -12.76 9.06 -37.74 -0.34 -13.10 16 8 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 9 C 0.14 3.82 5.55 -106.85 -0.59 3.22 16 10 C -0.25 -6.52 9.79 -38.84 -0.38 -6.90 16 11 C -0.07 -1.61 10.02 -39.69 -0.40 -2.00 16 12 C -0.30 -6.77 9.28 -39.08 -0.36 -7.14 16 13 C 0.21 5.01 6.64 -83.86 -0.56 4.46 16 14 N -0.75 -14.21 5.38 -51.75 -0.28 -14.48 16 15 C 0.15 2.41 3.49 -67.44 -0.24 2.18 16 16 H 0.10 1.66 6.05 -51.93 -0.31 1.35 16 17 C -0.16 -2.17 7.71 -25.78 -0.20 -2.37 16 18 C -0.13 -1.47 7.14 -26.24 -0.19 -1.65 16 19 C -0.09 -1.18 1.11 -154.11 -0.17 -1.35 16 20 C -0.10 -1.30 5.68 -25.35 -0.14 -1.44 16 21 C -0.12 -1.34 6.91 -24.61 -0.17 -1.52 16 22 C -0.12 -1.44 6.84 -24.93 -0.17 -1.62 16 23 C -0.11 -1.35 6.33 -25.87 -0.16 -1.51 16 24 C -0.23 -5.94 8.50 -38.68 -0.33 -6.27 16 25 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 26 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 27 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.09 1.77 6.01 -52.49 -0.32 1.45 16 29 H 0.39 7.20 6.25 -40.82 -0.26 6.95 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 34 H 0.07 1.07 5.88 -51.93 -0.31 0.77 16 35 H 0.06 0.75 7.88 -51.93 -0.41 0.34 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 41 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 42 H 0.12 3.16 6.26 -52.48 -0.33 2.83 16 LS Contribution 327.89 15.07 4.94 4.94 Total: -1.00 -27.83 327.89 -10.77 -38.60 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.52 Total: 12.43 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -4.49 Total: -35.14 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.33 Total: -35.02 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.83 -10.77 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694472642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.643 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds