Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48497 * 109.47010 * 179.72250 * 3 2 1 5 5 H 1.48497 * 109.47336 * 299.72138 * 3 2 1 6 6 H 1.48507 * 109.47322 * 59.72517 * 3 2 1 7 7 C 1.39941 * 120.00153 * 179.72194 * 2 1 3 8 8 H 1.08000 * 119.99819 * 206.02493 * 7 2 1 9 9 C 1.41399 * 119.99996 * 26.02202 * 7 2 1 10 10 C 1.40713 * 120.24441 * 205.58642 * 9 7 2 11 11 C 1.37622 * 119.73880 * 179.72189 * 10 9 7 12 12 C 1.38627 * 120.24973 * 0.53689 * 11 10 9 13 13 C 1.50708 * 119.74909 * 179.73814 * 12 11 10 14 14 N 1.46898 * 109.46921 * 270.02299 * 13 12 11 15 15 C 1.47707 * 111.00026 * 77.84995 * 14 13 12 16 16 C 1.52946 * 86.96031 * 140.16191 * 15 14 13 17 17 H 1.09002 * 112.29280 * 82.94880 * 16 15 14 18 18 C 1.50481 * 115.95649 * 213.32597 * 16 15 14 19 19 C 1.51638 * 114.43862 * 66.26648 * 18 16 15 20 20 C 1.52610 * 111.02163 * 46.73838 * 19 18 16 21 21 C 1.52980 * 108.77982 * 296.08890 * 20 19 18 22 22 C 1.48158 * 110.99689 * 173.28046 * 14 13 12 23 23 H 1.08998 * 113.85883 * 104.93255 * 22 14 13 24 24 C 1.38634 * 120.50673 * 359.76029 * 12 11 10 25 25 C 1.37621 * 120.24306 * 359.95863 * 24 12 11 26 26 H 0.97000 * 120.00010 * 185.43447 * 1 2 3 27 27 H 1.07993 * 120.12616 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.87175 * 180.27973 * 11 10 9 29 29 H 1.08997 * 109.47086 * 30.02384 * 13 12 11 30 30 H 1.08993 * 109.46986 * 150.02176 * 13 12 11 31 31 H 1.09001 * 113.62943 * 254.68260 * 15 14 13 32 32 H 1.08998 * 113.62999 * 25.64239 * 15 14 13 33 33 H 1.09006 * 108.48981 * 187.54761 * 18 16 15 34 34 H 1.08990 * 108.49391 * 304.98194 * 18 16 15 35 35 H 1.09006 * 109.16628 * 167.13695 * 19 18 16 36 36 H 1.08995 * 109.16499 * 286.38947 * 19 18 16 37 37 H 1.09007 * 109.59120 * 55.87941 * 20 19 18 38 38 H 1.09003 * 109.58497 * 176.29668 * 20 19 18 39 39 H 1.08995 * 109.51851 * 183.57403 * 21 20 19 40 40 H 1.09004 * 109.50965 * 303.73111 * 21 20 19 41 41 H 1.07995 * 119.87853 * 179.97438 * 24 12 11 42 42 H 1.07998 * 120.12612 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0068 5 1 1.8886 2.3935 -1.2158 6 1 1.8784 2.3994 1.2092 7 6 2.0080 -1.2119 0.0059 8 1 3.0059 -1.2573 0.4165 9 6 1.4086 -2.3770 -0.5257 10 6 1.8100 -3.6486 -0.0765 11 6 1.2155 -4.7755 -0.5969 12 6 0.2327 -4.6615 -1.5679 13 6 -0.4066 -5.9033 -2.1342 14 7 0.3559 -6.3560 -3.3053 15 6 1.5882 -7.0595 -2.8950 16 6 1.3093 -8.0418 -4.0337 17 1 1.6659 -7.6722 -4.9952 18 6 1.7259 -9.4672 -3.7909 19 6 0.9502 -10.1692 -2.6932 20 6 -0.5499 -9.9347 -2.8470 21 6 -0.8355 -8.4421 -2.6716 22 6 -0.1458 -7.6619 -3.7930 23 1 -0.7392 -7.5937 -4.7047 24 6 -0.1663 -3.4141 -2.0223 25 6 0.4103 -2.2734 -1.5120 26 1 -0.4850 -0.8363 0.0796 27 1 2.5781 -3.7397 0.6771 28 1 1.5188 -5.7524 -0.2504 29 1 -0.4099 -6.6877 -1.3774 30 1 -1.4313 -5.6810 -2.4316 31 1 2.4949 -6.4716 -3.0372 32 1 1.5250 -7.5097 -1.9043 33 1 1.5979 -10.0274 -4.7171 34 1 2.7836 -9.4782 -3.5280 35 1 1.1520 -11.2394 -2.7407 36 1 1.2742 -9.7867 -1.7253 37 1 -0.8699 -10.2539 -3.8390 38 1 -1.0881 -10.5015 -2.0873 39 1 -1.9108 -8.2694 -2.7161 40 1 -0.4521 -8.1089 -1.7072 41 1 -0.9326 -3.3371 -2.7794 42 1 0.0977 -1.3026 -1.8671 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706826696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = 23.972632 kcal Electronic energy + Delta-G solvation = -20657.936842 eV Core-core repulsion = 17794.958656 eV Total energy + Delta-G solvation = -2862.978186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36943 -39.60283 -36.50780 -35.59153 -33.17116 -31.96595 -31.31790 -29.49817 -27.49182 -26.53031 -25.06876 -23.34120 -22.89379 -22.22339 -21.27953 -19.85069 -18.70642 -17.33414 -16.82636 -16.60209 -16.32424 -16.18273 -15.70109 -15.44084 -14.90762 -14.69229 -14.44818 -14.10914 -13.91882 -13.64805 -13.52793 -13.20637 -13.00817 -12.79185 -12.75749 -12.37211 -12.17180 -11.98759 -11.81612 -11.78146 -11.57700 -11.35318 -11.30521 -11.03347 -10.82973 -10.76955 -9.67176 -9.61184 -9.35238 -9.16511 -6.45946 0.86701 0.93357 1.48202 1.61930 1.77734 2.31470 2.62173 3.15845 3.40575 3.56481 3.70461 3.94503 4.04327 4.15184 4.20613 4.22115 4.29180 4.35653 4.39148 4.43169 4.58461 4.66095 4.68843 4.77152 4.82971 4.89164 4.93970 5.03875 5.07362 5.11184 5.20657 5.22494 5.30090 5.37185 5.41371 5.43464 5.45669 5.55987 5.74799 5.79592 5.84126 6.06993 6.22071 6.25544 6.39769 6.79191 6.93822 8.02726 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.003696 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.710247 B = 7573.287814 C = 7725.511441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.004 3.996 3 Si 1.121 2.879 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.070 3.930 10 C -0.245 4.245 11 C -0.070 4.070 12 C -0.200 4.200 13 C 0.084 3.916 14 N -0.487 5.487 15 C 0.005 3.995 16 C -0.094 4.094 17 H 0.090 0.910 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.137 4.137 22 C 0.033 3.967 23 H 0.092 0.908 24 C -0.072 4.072 25 C -0.237 4.237 26 H 0.282 0.718 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -17.741 -5.946 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.212 4.212 3 Si 0.938 3.062 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.067 3.933 10 C -0.265 4.265 11 C -0.089 4.089 12 C -0.201 4.201 13 C -0.043 4.043 14 N -0.208 5.208 15 C -0.124 4.124 16 C -0.113 4.113 17 H 0.108 0.892 18 C -0.140 4.140 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.175 4.175 22 C -0.076 4.076 23 H 0.110 0.890 24 C -0.091 4.091 25 C -0.257 4.257 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.218 -15.489 -6.428 16.771 hybrid contribution 0.016 -1.722 0.827 1.911 sum -0.202 -17.211 -5.601 18.100 Atomic orbital electron populations 1.70521 1.08935 1.33072 1.31807 1.28437 0.95690 1.07460 0.89618 0.82970 0.74823 0.69623 0.78779 1.18909 1.19152 1.18903 1.20775 1.03671 0.95511 1.39292 0.91314 1.17986 0.91355 0.93572 0.90350 1.21114 1.06751 0.92999 1.05608 1.20671 0.95422 0.96806 0.95978 1.19296 1.03661 0.93868 1.03264 1.21333 0.96662 0.93833 0.92487 1.69519 1.04793 1.21619 1.24912 1.23730 0.95013 0.95245 0.98416 1.21799 0.95376 0.95522 0.98612 0.89204 1.20522 1.00199 0.93320 0.99973 1.21188 0.95057 1.00873 0.98379 1.21342 0.96390 0.94263 1.02684 1.22019 1.00646 0.96763 0.98084 1.23291 0.96593 0.88971 0.98762 0.88997 1.20691 0.98224 0.92528 0.97652 1.21074 1.05105 0.97013 1.02489 0.90565 0.88719 0.86853 0.92014 0.91374 0.92312 0.91242 0.90735 0.91419 0.90201 0.93141 0.90947 0.90918 0.91110 0.91604 0.87893 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.15 12.36 21.83 0.27 -45.88 16 2 C 0.00 0.19 4.92 85.26 0.42 0.61 16 3 Si 1.12 45.10 30.00 68.60 2.06 47.16 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.56 -31.98 8.98 23.46 0.21 -31.77 16 8 H 0.07 3.82 7.96 -2.91 -0.02 3.80 16 9 C 0.07 3.93 5.29 -21.29 -0.11 3.82 16 10 C -0.25 -12.48 9.80 22.73 0.22 -12.26 16 11 C -0.07 -3.10 9.22 22.22 0.20 -2.90 16 12 C -0.20 -8.58 5.27 -19.67 -0.10 -8.68 16 13 C 0.08 2.84 4.32 85.56 0.37 3.20 16 14 N -0.49 -15.26 6.39 -923.27 -5.90 -21.16 16 15 C 0.00 0.14 6.30 83.11 0.52 0.66 16 16 C -0.09 -2.05 4.06 -11.85 -0.05 -2.10 16 17 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 18 C -0.10 -1.65 5.53 29.33 0.16 -1.49 16 19 C -0.12 -1.75 5.63 30.02 0.17 -1.58 16 20 C -0.11 -1.64 5.90 30.46 0.18 -1.46 16 21 C -0.14 -2.74 4.38 30.60 0.13 -2.60 16 22 C 0.03 0.76 4.53 41.43 0.19 0.95 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 C -0.07 -3.46 9.67 22.22 0.21 -3.25 16 25 C -0.24 -12.96 7.97 22.73 0.18 -12.77 16 26 H 0.28 16.56 6.73 -92.71 -0.62 15.94 16 27 H 0.09 4.62 8.06 -2.91 -0.02 4.59 16 28 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.06 1.88 4.92 -2.39 -0.01 1.87 16 30 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.88 6.43 -2.39 -0.02 1.86 16 33 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.05 0.85 7.79 -2.39 -0.02 0.83 16 37 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.49 4.58 -2.38 -0.01 1.48 16 41 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.08 4.80 6.55 -2.91 -0.02 4.78 16 Total: -1.00 -61.86 322.31 0.48 -61.38 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 1.13 Total: 30.11 kcal Atomic # 6 Polarization: -74.53 SS G_CDS: 2.91 Total: -71.61 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -5.63 Total: -67.03 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.06 Total: 47.16 kcal Total: -61.86 0.48 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706826696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.352 kcal (2) G-P(sol) polarization free energy of solvation -61.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds