Wall clock time and date at job start Mon Mar 30 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99629 * 2 1 4 4 H 1.48502 * 109.46706 * 269.99506 * 3 2 1 5 5 H 1.48501 * 109.47091 * 29.99403 * 3 2 1 6 6 H 1.48501 * 109.47074 * 149.99778 * 3 2 1 7 7 C 1.37871 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00332 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47524 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47693 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00078 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99908 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.47353 * 14.99628 * 14 12 11 16 16 F 1.39897 * 109.47325 * 254.99855 * 14 12 11 17 17 C 1.53002 * 109.47420 * 134.99690 * 14 12 11 18 18 C 1.52996 * 109.47201 * 185.00144 * 17 14 12 19 19 C 1.53002 * 109.46891 * 175.00241 * 18 17 14 20 20 C 1.52996 * 109.46891 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47328 * 299.99597 * 20 19 18 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.46975 * 294.99833 * 18 17 14 24 24 H 0.97000 * 120.00143 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47307 * 59.99568 * 9 7 2 26 26 H 1.09007 * 109.47352 * 299.99806 * 9 7 2 27 27 H 1.09005 * 109.47026 * 59.99586 * 10 9 7 28 28 H 1.08997 * 109.46867 * 300.00552 * 10 9 7 29 29 H 0.96997 * 119.99427 * 359.97438 * 11 10 9 30 30 H 1.08998 * 109.46646 * 64.99788 * 17 14 12 31 31 H 1.09001 * 109.46843 * 305.00073 * 17 14 12 32 32 H 1.09001 * 109.47372 * 55.00205 * 18 17 14 33 33 H 1.08992 * 109.47056 * 59.99654 * 19 18 17 34 34 H 1.09004 * 109.47006 * 299.99770 * 19 18 17 35 35 H 1.09004 * 109.47368 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.47372 * 59.99964 * 20 19 18 37 37 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 39 39 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 40 40 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47375 * 300.00370 * 23 18 17 42 42 H 1.09000 * 109.47140 * 60.00388 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0003 13 8 3.3998 -6.0979 0.0007 14 6 1.4335 -7.4030 0.0003 15 1 0.3923 -7.2215 -0.2660 16 9 1.4956 -7.9774 1.2744 17 6 2.0622 -8.3549 -1.0194 18 6 1.2240 -9.6316 -1.1097 19 6 1.7800 -10.5295 -2.2167 20 6 0.9422 -11.8065 -2.3066 21 6 0.9999 -12.5494 -0.9703 22 6 0.4439 -11.6516 0.1368 23 6 1.2811 -10.3747 0.2265 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.0751 -8.6066 -0.7050 31 1 2.0943 -7.8715 -1.9959 32 1 0.1900 -9.3722 -1.3372 33 1 2.8139 -10.7889 -1.9892 34 1 1.7393 -10.0001 -3.1687 35 1 1.3380 -12.4460 -3.0956 36 1 -0.0919 -11.5474 -2.5339 37 1 0.4033 -13.4595 -1.0344 38 1 2.0340 -12.8085 -0.7430 39 1 -0.5901 -11.3924 -0.0904 40 1 0.4854 -12.1806 1.0889 41 1 2.3151 -10.6341 0.4541 42 1 0.8850 -9.7351 1.0152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793798560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:24 Heat of formation + Delta-G solvation = -132.979256 kcal Electronic energy + Delta-G solvation = -20767.158908 eV Core-core repulsion = 17466.605553 eV Total energy + Delta-G solvation = -3300.553355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.97401 -39.30778 -38.73732 -35.02045 -33.65526 -32.90644 -30.92524 -30.24829 -28.87652 -25.36470 -23.85208 -22.80570 -21.39010 -20.93176 -20.30479 -19.89650 -17.58202 -16.76171 -16.43225 -15.79160 -15.47230 -14.87758 -14.62826 -14.54435 -14.46832 -14.36091 -13.93019 -13.75645 -12.97152 -12.90676 -12.80128 -12.34392 -12.10815 -12.04416 -11.76485 -11.40397 -11.27421 -11.24256 -11.07085 -11.01593 -10.67689 -10.63810 -10.40128 -10.29559 -10.12529 -9.80809 -9.46682 -9.19187 -8.65588 -8.42795 -6.12922 -4.16124 2.69020 3.27339 3.30333 3.34297 3.39818 4.32761 4.37286 4.41661 4.49202 4.63159 4.65833 4.80507 4.89047 5.06369 5.14722 5.22245 5.24249 5.29931 5.34197 5.39113 5.47137 5.67554 5.76199 5.81234 5.83907 5.96409 5.97198 6.02800 6.11392 6.23412 6.24138 6.26712 6.32330 6.64934 6.75699 7.45110 7.55533 7.80641 7.85505 8.21411 8.42614 8.89640 9.49058 10.98652 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.047582 B = 0.002800 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.321235 B = 9998.858042 C =10018.819751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.119 3.881 11 N -0.712 5.712 12 C 0.483 3.517 13 O -0.532 6.532 14 C 0.084 3.916 15 H 0.097 0.903 16 F -0.187 7.187 17 C -0.131 4.131 18 C -0.085 4.085 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.133 4.133 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.400 0.600 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 -22.881 -3.068 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.003 4.003 11 N -0.362 5.362 12 C 0.265 3.735 13 O -0.409 6.409 14 C 0.044 3.956 15 H 0.115 0.885 16 F -0.168 7.168 17 C -0.170 4.170 18 C -0.104 4.104 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.170 4.170 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.234 0.766 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.837 -22.740 -3.029 22.956 hybrid contribution -0.107 0.980 0.059 0.987 sum -0.945 -21.761 -2.970 21.983 Atomic orbital electron populations 1.69951 1.06101 1.26952 1.50269 1.24997 0.94905 0.99451 0.94914 0.86501 0.79847 0.82931 0.78221 1.20528 1.21125 1.19707 1.21035 0.93260 0.90336 1.51518 0.92216 1.19334 0.94171 0.91060 0.97942 1.21814 0.96184 0.81270 1.01045 1.46434 1.10719 1.06585 1.72471 1.20881 0.88679 0.85816 0.78083 1.90702 1.13685 1.87529 1.48991 1.21642 1.01550 0.91523 0.80889 0.88475 1.92773 1.97769 1.84821 1.41459 1.22098 1.01140 0.95000 0.98716 1.21174 0.99331 0.93935 0.95950 1.21566 0.99657 0.95708 0.98218 1.21518 1.00292 0.96594 0.97197 1.21553 1.01146 0.98007 0.95120 1.21534 0.99498 0.96331 0.98315 1.21985 1.00759 0.96639 0.97633 0.92788 0.95867 0.95831 0.92296 0.92276 0.76615 0.89432 0.89738 0.90953 0.91824 0.91903 0.92208 0.92056 0.92421 0.92133 0.92191 0.92206 0.92010 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 11 N -0.71 -12.12 5.56 -60.29 -0.33 -12.45 16 12 C 0.48 8.05 7.17 -10.99 -0.08 7.97 16 13 O -0.53 -10.91 16.61 5.56 0.09 -10.81 16 14 C 0.08 1.03 3.73 -27.88 -0.10 0.93 16 15 H 0.10 0.91 8.00 -51.93 -0.42 0.50 16 16 F -0.19 -2.56 13.88 2.25 0.03 -2.53 16 17 C -0.13 -1.43 4.27 -26.73 -0.11 -1.54 16 18 C -0.09 -0.77 2.19 -90.62 -0.20 -0.96 16 19 C -0.11 -0.93 5.20 -26.73 -0.14 -1.06 16 20 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 22 C -0.12 -0.96 5.92 -26.76 -0.16 -1.11 16 23 C -0.13 -1.25 4.65 -26.76 -0.12 -1.37 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.40 5.74 8.37 -40.82 -0.34 5.40 16 30 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.89 5.43 -51.93 -0.28 0.61 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -30.84 338.46 -8.54 -39.39 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.34 Total: 0.01 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.81 Total: -9.74 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.40 Total: -37.63 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.03 Total: -2.53 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.84 -8.54 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793798560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.590 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds