Wall clock time and date at job start Mon Mar 30 2020 01:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99629 * 2 1 4 4 H 1.48502 * 109.46706 * 269.99506 * 3 2 1 5 5 H 1.48501 * 109.47091 * 29.99403 * 3 2 1 6 6 H 1.48501 * 109.47074 * 149.99778 * 3 2 1 7 7 C 1.37871 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00332 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47524 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47693 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00078 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99908 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.47353 * 14.99628 * 14 12 11 16 16 F 1.39897 * 109.47325 * 254.99855 * 14 12 11 17 17 C 1.53002 * 109.47420 * 134.99690 * 14 12 11 18 18 C 1.52996 * 109.47201 * 185.00144 * 17 14 12 19 19 C 1.53002 * 109.46891 * 175.00241 * 18 17 14 20 20 C 1.52996 * 109.46891 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47328 * 299.99597 * 20 19 18 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.46975 * 294.99833 * 18 17 14 24 24 H 0.97000 * 120.00143 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47307 * 59.99568 * 9 7 2 26 26 H 1.09007 * 109.47352 * 299.99806 * 9 7 2 27 27 H 1.09005 * 109.47026 * 59.99586 * 10 9 7 28 28 H 1.08997 * 109.46867 * 300.00552 * 10 9 7 29 29 H 0.96997 * 119.99427 * 359.97438 * 11 10 9 30 30 H 1.08998 * 109.46646 * 64.99788 * 17 14 12 31 31 H 1.09001 * 109.46843 * 305.00073 * 17 14 12 32 32 H 1.09001 * 109.47372 * 55.00205 * 18 17 14 33 33 H 1.08992 * 109.47056 * 59.99654 * 19 18 17 34 34 H 1.09004 * 109.47006 * 299.99770 * 19 18 17 35 35 H 1.09004 * 109.47368 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.47372 * 59.99964 * 20 19 18 37 37 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 39 39 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 40 40 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47375 * 300.00370 * 23 18 17 42 42 H 1.09000 * 109.47140 * 60.00388 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0003 13 8 3.3998 -6.0979 0.0007 14 6 1.4335 -7.4030 0.0003 15 1 0.3923 -7.2215 -0.2660 16 9 1.4956 -7.9774 1.2744 17 6 2.0622 -8.3549 -1.0194 18 6 1.2240 -9.6316 -1.1097 19 6 1.7800 -10.5295 -2.2167 20 6 0.9422 -11.8065 -2.3066 21 6 0.9999 -12.5494 -0.9703 22 6 0.4439 -11.6516 0.1368 23 6 1.2811 -10.3747 0.2265 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.0751 -8.6066 -0.7050 31 1 2.0943 -7.8715 -1.9959 32 1 0.1900 -9.3722 -1.3372 33 1 2.8139 -10.7889 -1.9892 34 1 1.7393 -10.0001 -3.1687 35 1 1.3380 -12.4460 -3.0956 36 1 -0.0919 -11.5474 -2.5339 37 1 0.4033 -13.4595 -1.0344 38 1 2.0340 -12.8085 -0.7430 39 1 -0.5901 -11.3924 -0.0904 40 1 0.4854 -12.1806 1.0889 41 1 2.3151 -10.6341 0.4541 42 1 0.8850 -9.7351 1.0152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793798560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:23 Heat of formation + Delta-G solvation = -150.664808 kcal Electronic energy + Delta-G solvation = -20767.925811 eV Core-core repulsion = 17466.605553 eV Total energy + Delta-G solvation = -3301.320258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.04279 -40.68426 -39.48226 -36.71351 -34.89055 -34.46658 -31.88558 -31.55917 -30.03171 -27.01287 -25.12671 -23.47054 -22.92330 -22.04922 -21.51839 -20.60803 -18.91480 -18.40221 -17.85319 -17.03948 -16.54909 -16.37828 -16.11754 -15.87028 -15.44767 -15.09622 -14.97468 -14.67585 -14.51965 -14.31887 -13.95580 -13.59029 -13.25870 -12.97138 -12.91008 -12.75374 -12.57369 -12.50883 -12.27571 -12.21301 -11.92705 -11.75826 -11.68967 -11.48204 -11.29350 -11.12698 -10.84108 -10.62097 -10.51178 -10.14979 -8.25563 -6.36035 1.32987 1.41430 1.41797 1.53142 1.99582 2.41251 3.09431 3.38606 3.48182 3.66722 3.75289 3.91498 3.97344 4.09758 4.35361 4.43493 4.44746 4.48162 4.52301 4.62829 4.68697 4.71161 4.81299 4.82969 4.91137 5.00857 5.09333 5.17721 5.24361 5.32054 5.34213 5.36568 5.43969 5.46884 5.54249 5.55580 5.65268 5.76064 6.13782 6.43177 6.76922 7.05930 7.33471 8.86199 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.047582 B = 0.002800 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.321235 B = 9998.858042 C =10018.819751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.137 3.863 11 N -0.706 5.706 12 C 0.481 3.519 13 O -0.573 6.573 14 C 0.091 3.909 15 H 0.137 0.863 16 F -0.194 7.194 17 C -0.127 4.127 18 C -0.079 4.079 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.133 4.133 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.009 0.991 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.415 0.585 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -23.534 -3.701 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.013 3.987 11 N -0.357 5.357 12 C 0.266 3.734 13 O -0.453 6.453 14 C 0.052 3.948 15 H 0.155 0.845 16 F -0.174 7.174 17 C -0.166 4.166 18 C -0.098 4.098 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.251 0.749 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.504 -23.417 -3.662 23.749 hybrid contribution 0.100 1.155 0.273 1.191 sum -1.405 -22.262 -3.390 22.562 Atomic orbital electron populations 1.70048 1.07493 1.28052 1.50929 1.25854 0.95796 1.03054 0.94389 0.85459 0.78600 0.78517 0.78567 1.19662 1.20514 1.19187 1.21461 0.93586 0.91960 1.51649 0.92355 1.19142 0.94194 0.91580 0.96587 1.21311 0.95204 0.82073 1.00075 1.46250 1.11409 1.05583 1.72449 1.21691 0.88395 0.86875 0.76443 1.90683 1.15773 1.88226 1.50590 1.21763 1.03037 0.89036 0.80915 0.84534 1.92775 1.97862 1.84670 1.42140 1.22097 1.00403 0.95674 0.98391 1.21152 0.99693 0.92921 0.96018 1.21565 0.99389 0.96116 0.98074 1.21514 1.00452 0.96129 0.97305 1.21558 1.00999 0.98317 0.94958 1.21521 0.99531 0.95705 0.98736 1.21953 1.00206 0.97298 0.97577 0.92487 0.96881 0.97257 0.93615 0.92970 0.74862 0.91395 0.89013 0.89462 0.92626 0.91297 0.91460 0.91438 0.91398 0.92670 0.91524 0.92109 0.93314 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.32 9.11 25.60 0.23 -30.09 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 5.78 5.61 86.38 0.48 6.26 16 11 N -0.71 -23.55 5.56 -463.06 -2.57 -26.12 16 12 C 0.48 15.72 7.17 87.66 0.63 16.35 16 13 O -0.57 -23.66 16.61 -3.03 -0.05 -23.71 16 14 C 0.09 2.11 3.73 29.85 0.11 2.22 16 15 H 0.14 2.12 8.00 -2.39 -0.02 2.10 16 16 F -0.19 -5.07 13.88 44.97 0.62 -4.45 16 17 C -0.13 -2.61 4.27 30.59 0.13 -2.48 16 18 C -0.08 -1.27 2.19 -10.80 -0.02 -1.30 16 19 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 20 C -0.12 -1.44 5.92 30.59 0.18 -1.25 16 21 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 22 C -0.12 -1.68 5.92 30.58 0.18 -1.50 16 23 C -0.13 -2.34 4.65 30.58 0.14 -2.19 16 24 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 27 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.41 11.36 8.37 -92.71 -0.78 10.58 16 30 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.49 5.43 -2.39 -0.01 1.48 16 Total: -1.00 -65.87 338.46 3.55 -62.33 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.21 Total: 14.74 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 3.02 Total: -14.68 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.29 Total: -79.53 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.62 Total: -4.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -65.87 3.55 -62.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793798560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.336 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds