Wall clock time and date at job start Mon Mar 30 2020 01:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00256 * 2 1 4 4 H 1.48498 * 109.47069 * 269.99947 * 3 2 1 5 5 H 1.48505 * 109.46914 * 29.99839 * 3 2 1 6 6 H 1.48497 * 109.47098 * 149.99572 * 3 2 1 7 7 C 1.37877 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99496 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00479 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47014 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46747 * 179.97438 * 10 9 7 12 12 C 1.34782 * 119.99821 * 179.97438 * 11 10 9 13 13 O 1.21276 * 119.99813 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00109 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.46695 * 345.00557 * 14 12 11 16 16 F 1.39901 * 109.47076 * 104.99805 * 14 12 11 17 17 C 1.52994 * 109.47443 * 224.99916 * 14 12 11 18 18 C 1.53001 * 109.47203 * 174.99605 * 17 14 12 19 19 C 1.53000 * 109.46886 * 184.99990 * 18 17 14 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47317 * 59.99960 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 H 0.97002 * 119.99675 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46989 * 59.99567 * 9 7 2 26 26 H 1.09000 * 109.46449 * 299.99340 * 9 7 2 27 27 H 1.09003 * 109.47281 * 59.99983 * 10 9 7 28 28 H 1.08995 * 109.47082 * 299.99552 * 10 9 7 29 29 H 0.96995 * 120.00282 * 0.02562 * 11 10 9 30 30 H 1.09008 * 109.46970 * 54.99964 * 17 14 12 31 31 H 1.09000 * 109.47017 * 295.00272 * 17 14 12 32 32 H 1.08992 * 109.47514 * 305.00424 * 18 17 14 33 33 H 1.09002 * 109.47398 * 300.00496 * 19 18 17 34 34 H 1.09001 * 109.47194 * 60.00677 * 19 18 17 35 35 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47153 * 300.00319 * 20 19 18 37 37 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 39 39 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 40 40 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4866 -2.6365 -0.0001 12 6 6.1605 -3.8038 0.0003 13 8 5.5540 -4.8540 0.0012 14 6 7.6674 -3.8038 0.0008 15 1 8.0308 -2.8112 -0.2651 16 9 8.1333 -4.1450 1.2751 17 6 8.1778 -4.8239 -1.0188 18 6 9.7027 -4.7363 -1.1085 19 6 10.2027 -5.6665 -2.2155 20 6 11.7276 -5.5794 -2.3048 21 6 12.3417 -6.0009 -0.9684 22 6 11.8416 -5.0707 0.1387 23 6 10.3167 -5.1579 0.2280 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8752 -0.6797 -0.8895 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1505 0.8897 29 1 5.9716 -1.7965 0.0003 30 1 7.7435 -4.6100 -1.9954 31 1 7.8893 -5.8271 -0.7047 32 1 9.9950 -3.7112 -1.3357 33 1 9.9104 -6.6917 -1.9883 34 1 9.7650 -5.3664 -3.1676 35 1 12.0839 -6.2417 -3.0937 36 1 12.0203 -4.5542 -2.5318 37 1 13.4281 -5.9384 -1.0318 38 1 12.0490 -7.0261 -0.7414 39 1 12.1342 -4.0456 -0.0883 40 1 12.2788 -5.3714 1.0909 41 1 9.9605 -4.4956 1.0170 42 1 10.0241 -6.1831 0.4550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793798561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:26 Heat of formation + Delta-G solvation = -128.527183 kcal Electronic energy + Delta-G solvation = -20826.500579 eV Core-core repulsion = 17526.140281 eV Total energy + Delta-G solvation = -3300.360299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.04229 -39.39625 -38.78883 -35.15940 -33.70897 -32.86367 -30.96162 -30.57672 -29.12719 -25.55284 -23.83040 -22.84146 -21.33484 -20.87544 -20.34386 -19.93424 -17.63285 -17.00313 -16.73434 -15.90051 -15.52246 -14.97662 -14.68676 -14.58873 -14.41840 -14.20619 -14.05763 -13.84160 -13.15418 -12.98873 -12.86060 -12.64105 -12.15935 -12.09603 -11.81278 -11.55580 -11.45069 -11.30263 -11.25755 -11.07073 -10.68153 -10.46018 -10.38396 -10.29045 -10.15420 -9.99633 -9.48239 -9.31214 -8.73927 -8.62951 -6.14509 -4.15174 2.60569 3.22334 3.22644 3.30280 3.31396 4.27113 4.34357 4.34818 4.44484 4.56421 4.60383 4.72404 4.83090 5.01346 5.10385 5.17664 5.18211 5.25725 5.30178 5.34363 5.43291 5.62952 5.71465 5.76810 5.80134 5.92611 5.93198 5.98525 6.00915 6.07346 6.12307 6.19623 6.28120 6.48205 6.58218 7.04721 7.16578 7.61291 7.68795 8.29885 8.41134 8.89439 9.45203 10.98463 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.038244 B = 0.003033 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.967756 B = 9228.919874 C = 9365.214223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.127 3.873 11 N -0.716 5.716 12 C 0.484 3.516 13 O -0.527 6.527 14 C 0.084 3.916 15 H 0.097 0.903 16 F -0.187 7.187 17 C -0.132 4.132 18 C -0.085 4.085 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.133 4.133 24 H 0.265 0.735 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.398 0.602 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.427 -7.624 -3.052 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.005 3.995 11 N -0.367 5.367 12 C 0.266 3.734 13 O -0.404 6.404 14 C 0.044 3.956 15 H 0.115 0.885 16 F -0.168 7.168 17 C -0.170 4.170 18 C -0.104 4.104 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.170 4.170 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.232 0.768 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.794 -8.274 -3.015 26.311 hybrid contribution 0.517 1.372 0.053 1.467 sum 25.311 -6.902 -2.961 26.402 Atomic orbital electron populations 1.69902 1.06301 1.27110 1.50236 1.25003 0.94778 0.99173 0.94315 0.86747 0.80274 0.83515 0.78508 1.20197 1.21220 1.19073 1.20903 0.88566 0.94943 1.51879 0.90596 1.19801 0.98112 0.91137 0.96922 1.21600 0.75539 1.00447 1.01889 1.46425 1.09567 1.07701 1.72990 1.20878 0.89666 0.84784 0.78034 1.90718 1.69880 1.31218 1.48546 1.21638 0.91668 1.01311 0.80958 0.88523 1.92780 1.88462 1.94121 1.41398 1.22107 0.95980 1.00231 0.98691 1.21173 0.93239 0.99972 0.95987 1.21567 0.95464 0.99936 0.98192 1.21517 0.95450 1.01415 0.97221 1.21556 0.99562 0.99625 0.95097 1.21544 0.96187 0.99604 0.98344 1.21995 0.94703 1.02745 0.97588 0.92494 0.95909 0.96351 0.91662 0.91666 0.76806 0.89706 0.89353 0.90993 0.91781 0.91897 0.92177 0.92081 0.92405 0.92098 0.92217 0.92192 0.89607 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.54 5.61 -4.04 -0.02 2.52 16 11 N -0.72 -11.39 5.56 -60.29 -0.33 -11.73 16 12 C 0.48 7.69 7.17 -10.98 -0.08 7.61 16 13 O -0.53 -10.50 16.61 5.56 0.09 -10.41 16 14 C 0.08 0.97 3.73 -27.89 -0.10 0.87 16 15 H 0.10 0.82 7.99 -51.93 -0.42 0.41 16 16 F -0.19 -2.44 13.88 2.25 0.03 -2.40 16 17 C -0.13 -1.36 4.27 -26.73 -0.11 -1.48 16 18 C -0.09 -0.72 2.19 -90.62 -0.20 -0.92 16 19 C -0.11 -0.88 5.20 -26.73 -0.14 -1.02 16 20 C -0.12 -0.83 5.92 -26.73 -0.16 -0.98 16 21 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 23 C -0.13 -1.19 4.65 -26.73 -0.12 -1.32 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 26 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.40 5.11 8.36 -40.82 -0.34 4.76 16 30 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.85 5.43 -51.93 -0.28 0.57 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -31.61 334.86 -8.17 -39.78 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.31 Total: 0.38 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.80 Total: -10.42 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.44 Total: -38.08 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.03 Total: -2.40 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.61 -8.17 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793798561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.746 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds