Wall clock time and date at job start Mon Mar 30 2020 01:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00256 * 2 1 4 4 H 1.48498 * 109.47069 * 269.99947 * 3 2 1 5 5 H 1.48505 * 109.46914 * 29.99839 * 3 2 1 6 6 H 1.48497 * 109.47098 * 149.99572 * 3 2 1 7 7 C 1.37877 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99496 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00479 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47014 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46747 * 179.97438 * 10 9 7 12 12 C 1.34782 * 119.99821 * 179.97438 * 11 10 9 13 13 O 1.21276 * 119.99813 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00109 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.46695 * 345.00557 * 14 12 11 16 16 F 1.39901 * 109.47076 * 104.99805 * 14 12 11 17 17 C 1.52994 * 109.47443 * 224.99916 * 14 12 11 18 18 C 1.53001 * 109.47203 * 174.99605 * 17 14 12 19 19 C 1.53000 * 109.46886 * 184.99990 * 18 17 14 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47317 * 59.99960 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 H 0.97002 * 119.99675 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46989 * 59.99567 * 9 7 2 26 26 H 1.09000 * 109.46449 * 299.99340 * 9 7 2 27 27 H 1.09003 * 109.47281 * 59.99983 * 10 9 7 28 28 H 1.08995 * 109.47082 * 299.99552 * 10 9 7 29 29 H 0.96995 * 120.00282 * 0.02562 * 11 10 9 30 30 H 1.09008 * 109.46970 * 54.99964 * 17 14 12 31 31 H 1.09000 * 109.47017 * 295.00272 * 17 14 12 32 32 H 1.08992 * 109.47514 * 305.00424 * 18 17 14 33 33 H 1.09002 * 109.47398 * 300.00496 * 19 18 17 34 34 H 1.09001 * 109.47194 * 60.00677 * 19 18 17 35 35 H 1.08996 * 109.47853 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47153 * 300.00319 * 20 19 18 37 37 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 39 39 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 40 40 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4866 -2.6365 -0.0001 12 6 6.1605 -3.8038 0.0003 13 8 5.5540 -4.8540 0.0012 14 6 7.6674 -3.8038 0.0008 15 1 8.0308 -2.8112 -0.2651 16 9 8.1333 -4.1450 1.2751 17 6 8.1778 -4.8239 -1.0188 18 6 9.7027 -4.7363 -1.1085 19 6 10.2027 -5.6665 -2.2155 20 6 11.7276 -5.5794 -2.3048 21 6 12.3417 -6.0009 -0.9684 22 6 11.8416 -5.0707 0.1387 23 6 10.3167 -5.1579 0.2280 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8752 -0.6797 -0.8895 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1505 0.8897 29 1 5.9716 -1.7965 0.0003 30 1 7.7435 -4.6100 -1.9954 31 1 7.8893 -5.8271 -0.7047 32 1 9.9950 -3.7112 -1.3357 33 1 9.9104 -6.6917 -1.9883 34 1 9.7650 -5.3664 -3.1676 35 1 12.0839 -6.2417 -3.0937 36 1 12.0203 -4.5542 -2.5318 37 1 13.4281 -5.9384 -1.0318 38 1 12.0490 -7.0261 -0.7414 39 1 12.1342 -4.0456 -0.0883 40 1 12.2788 -5.3714 1.0909 41 1 9.9605 -4.4956 1.0170 42 1 10.0241 -6.1831 0.4550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793798561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:26 Heat of formation + Delta-G solvation = -148.180146 kcal Electronic energy + Delta-G solvation = -20827.352796 eV Core-core repulsion = 17526.140281 eV Total energy + Delta-G solvation = -3301.212515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.03716 -40.70449 -39.48141 -36.76343 -34.86052 -34.46831 -32.25887 -31.55768 -30.14860 -27.11336 -25.02172 -23.46170 -22.70396 -22.07142 -21.50254 -20.60732 -19.08588 -18.69676 -17.84770 -17.06266 -16.46970 -16.25540 -16.10412 -15.90391 -15.49726 -15.13228 -14.98333 -14.73545 -14.63174 -14.52570 -13.95691 -13.59124 -13.37949 -13.06977 -12.91570 -12.75212 -12.52368 -12.34839 -12.18726 -12.10126 -11.92436 -11.76909 -11.75130 -11.53522 -11.29476 -11.15303 -10.84242 -10.79543 -10.51835 -10.18672 -8.30694 -6.38554 1.32583 1.39415 1.42501 1.53506 1.97531 2.36718 3.04508 3.38320 3.48033 3.67089 3.75450 3.91659 3.97428 4.09804 4.30162 4.36323 4.39086 4.47689 4.51902 4.63051 4.68737 4.71018 4.71660 4.82694 4.91182 5.01072 5.06545 5.09317 5.24369 5.32026 5.33850 5.35094 5.36943 5.38232 5.46910 5.54146 5.60543 5.65383 6.20247 6.42272 6.69301 7.07207 7.26212 8.86132 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.038244 B = 0.003033 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.967756 B = 9228.919874 C = 9365.214223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.013 4.013 10 C 0.141 3.859 11 N -0.705 5.705 12 C 0.481 3.519 13 O -0.574 6.574 14 C 0.092 3.908 15 H 0.142 0.858 16 F -0.194 7.194 17 C -0.129 4.129 18 C -0.079 4.079 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.133 4.133 24 H 0.268 0.732 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.418 0.582 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.845 -5.565 -3.661 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.580 4.580 8 H 0.046 0.954 9 C -0.050 4.050 10 C 0.017 3.983 11 N -0.356 5.356 12 C 0.266 3.734 13 O -0.453 6.453 14 C 0.053 3.947 15 H 0.160 0.840 16 F -0.175 7.175 17 C -0.167 4.167 18 C -0.097 4.097 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.171 4.171 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.255 0.745 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 28.262 -6.215 -3.623 29.164 hybrid contribution -0.630 0.605 0.256 0.911 sum 27.632 -5.609 -3.367 28.396 Atomic orbital electron populations 1.70080 1.08661 1.28477 1.51892 1.26111 0.95703 1.03983 0.93615 0.85521 0.79675 0.77148 0.79419 1.18784 1.21430 1.15814 1.21258 0.91649 0.93353 1.51713 0.95415 1.19659 0.94393 0.92687 0.98311 1.21113 0.78231 0.98765 1.00187 1.46163 1.07718 1.09021 1.72736 1.21732 0.91616 0.83729 0.76372 1.90704 1.71364 1.32911 1.50362 1.21772 0.87967 1.04069 0.80843 0.84020 1.92780 1.88155 1.94400 1.42134 1.22108 0.97470 0.98647 0.98512 1.21148 0.91524 1.01123 0.95899 1.21570 0.96260 0.99222 0.98157 1.21512 0.94591 1.02033 0.97251 1.21564 1.00186 0.99112 0.95031 1.21531 0.95048 1.00230 0.98665 1.21967 0.95827 1.01622 0.97653 0.92313 0.94436 0.94153 0.93261 0.93893 0.74451 0.88942 0.91639 0.89204 0.92802 0.91263 0.91570 0.91313 0.91426 0.92796 0.91376 0.92175 0.90418 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.00 0.17 5.47 84.66 0.46 0.63 16 3 Si 0.96 41.52 27.47 68.60 1.88 43.41 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.24 -8.95 6.54 99.48 0.65 -8.30 16 7 C -0.54 -30.59 9.66 25.60 0.25 -30.34 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C -0.01 -0.55 4.16 29.85 0.12 -0.43 16 10 C 0.14 5.61 5.61 86.38 0.48 6.09 16 11 N -0.70 -20.95 5.56 -463.06 -2.57 -23.52 16 12 C 0.48 14.67 7.17 87.66 0.63 15.29 16 13 O -0.57 -23.16 16.61 -3.02 -0.05 -23.21 16 14 C 0.09 1.92 3.73 29.85 0.11 2.03 16 15 H 0.14 1.73 7.99 -2.39 -0.02 1.71 16 16 F -0.19 -4.70 13.88 44.97 0.62 -4.08 16 17 C -0.13 -2.45 4.27 30.59 0.13 -2.32 16 18 C -0.08 -1.15 2.19 -10.79 -0.02 -1.17 16 19 C -0.11 -1.55 5.20 30.59 0.16 -1.39 16 20 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 21 C -0.12 -1.47 5.92 30.60 0.18 -1.29 16 22 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 23 C -0.13 -2.18 4.65 30.59 0.14 -2.04 16 24 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 25 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 26 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.42 9.08 8.36 -92.71 -0.78 8.31 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 1.40 5.43 -2.39 -0.01 1.39 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -71.33 334.86 3.35 -67.97 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.16 Total: 15.63 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 3.01 Total: -17.46 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -2.27 Total: -82.26 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.05 Total: -23.21 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.62 Total: -4.08 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.41 kcal Total: -71.33 3.35 -67.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793798561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.207 kcal (2) G-P(sol) polarization free energy of solvation -71.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds