Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99996 * 2 1 4 4 N 1.46897 * 109.47261 * 123.14693 * 3 2 1 5 5 C 1.46904 * 111.00096 * 211.37703 * 4 3 2 6 6 C 1.50697 * 109.47134 * 66.04446 * 5 4 3 7 7 H 1.08001 * 120.00166 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99776 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00223 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99560 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47394 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46924 * 120.00782 * 10 8 6 13 13 H 1.48507 * 109.46960 * 240.00306 * 10 8 6 14 14 C 1.46906 * 111.00058 * 87.42422 * 4 3 2 15 15 C 1.53001 * 109.46699 * 282.43392 * 14 4 3 16 16 H 1.08996 * 110.26815 * 58.51009 * 15 14 4 17 17 C 1.54347 * 110.29982 * 180.58401 * 15 14 4 18 18 C 1.54345 * 102.39221 * 92.57676 * 17 15 14 19 19 C 1.51364 * 105.17141 * 26.34522 * 18 17 15 20 20 C 1.38499 * 130.39720 * 162.80087 * 19 18 17 21 21 C 1.38100 * 120.21978 * 180.02562 * 20 19 18 22 22 C 1.38251 * 119.93405 * 359.97438 * 21 20 19 23 23 C 1.38108 * 119.93659 * 359.97438 * 22 21 20 24 24 C 1.38216 * 109.75960 * 342.81525 * 19 18 17 25 25 H 1.08001 * 119.99944 * 179.97438 * 1 2 3 26 26 H 1.08006 * 119.99899 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99620 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47333 * 3.14394 * 3 2 1 29 29 H 1.09003 * 109.46880 * 243.14381 * 3 2 1 30 30 H 1.09003 * 109.47002 * 186.04654 * 5 4 3 31 31 H 1.09001 * 109.47160 * 306.04532 * 5 4 3 32 32 H 0.97003 * 119.99768 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47053 * 42.43450 * 14 4 3 34 34 H 1.08996 * 109.46921 * 162.43427 * 14 4 3 35 35 H 1.09003 * 110.82081 * 210.79816 * 17 15 14 36 36 H 1.09001 * 110.82651 * 334.34871 * 17 15 14 37 37 H 1.09004 * 110.30432 * 145.26967 * 18 17 15 38 38 H 1.09004 * 110.30286 * 267.42013 * 18 17 15 39 39 H 1.08003 * 119.89108 * 0.02562 * 20 19 18 40 40 H 1.08005 * 120.03306 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.03130 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.89629 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9641 1.3505 1.1596 5 6 3.1363 2.7285 1.6388 6 6 1.8265 3.2388 2.1820 7 1 0.9535 2.6029 2.1725 8 6 1.7428 4.5170 2.6919 9 7 2.8059 5.2911 2.7038 10 14 0.1190 5.1497 3.3645 11 1 -0.9156 4.0922 3.2364 12 1 0.2830 5.5105 4.7956 13 1 -0.3011 6.3494 2.5966 14 6 4.2611 0.7373 0.8432 15 6 4.1253 -0.7864 0.8725 16 1 3.3693 -1.1119 0.1581 17 6 5.4821 -1.4510 0.5567 18 6 6.0853 -1.6569 1.9624 19 6 4.8958 -1.7555 2.8933 20 6 4.8058 -2.2443 4.1860 21 6 3.5951 -2.2337 4.8504 22 6 2.4688 -1.7332 4.2241 23 6 2.5567 -1.2442 2.9355 24 6 3.7697 -1.2554 2.2671 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3565 2.1328 0.0564 29 1 2.6472 1.3876 -0.9169 30 1 3.8888 2.7476 2.4272 31 1 3.4590 3.3627 0.8131 32 1 2.7469 6.1906 3.0623 33 1 4.5805 1.0547 -0.1494 34 1 5.0004 1.0505 1.5803 35 1 5.3374 -2.4070 0.0534 36 1 6.1086 -0.7884 -0.0405 37 1 6.6670 -2.5783 1.9932 38 1 6.7092 -0.8056 2.2347 39 1 5.6853 -2.6352 4.6761 40 1 3.5284 -2.6153 5.8586 41 1 1.5212 -1.7245 4.7421 42 1 1.6764 -0.8538 2.4467 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794735716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = 32.686133 kcal Electronic energy + Delta-G solvation = -21142.947774 eV Core-core repulsion = 18280.347434 eV Total energy + Delta-G solvation = -2862.600340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16050 -38.68533 -36.49497 -34.97235 -33.88602 -32.27761 -30.25387 -29.52067 -28.33721 -26.75303 -24.90741 -23.40346 -22.46420 -21.69355 -21.02488 -20.34003 -18.44977 -17.40982 -16.74024 -16.60659 -16.33144 -15.85190 -15.66198 -15.39182 -15.01037 -14.57749 -14.20015 -14.01715 -13.93843 -13.63535 -13.44548 -13.18897 -13.10518 -12.71777 -12.66412 -12.48273 -12.36840 -12.07245 -11.94770 -11.80732 -11.62848 -11.48150 -11.22013 -11.06248 -10.63459 -10.16669 -9.51664 -9.28247 -8.91456 -8.20758 -6.29602 0.61232 0.68536 1.37577 1.38754 1.50195 1.52273 2.38767 3.01178 3.11762 3.34645 3.63139 3.79989 4.07137 4.16028 4.25047 4.29376 4.36623 4.40721 4.43507 4.50184 4.67618 4.70438 4.71488 4.81889 4.88816 4.95137 5.03131 5.04311 5.08708 5.18615 5.25144 5.27709 5.31443 5.39725 5.48363 5.66553 5.71013 5.79975 5.81455 5.96987 6.04521 6.07606 6.30540 6.39331 6.68322 6.87366 7.39676 8.90427 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.006017 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.251834 B = 4652.540432 C = 4913.059965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C 0.083 3.917 4 N -0.527 5.527 5 C 0.213 3.787 6 C -0.512 4.512 7 H 0.061 0.939 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.069 3.931 15 C -0.048 4.048 16 H 0.089 0.911 17 C -0.110 4.110 18 C -0.077 4.077 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.098 4.098 24 C -0.082 4.082 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.058 0.942 29 H 0.039 0.961 30 H -0.004 1.004 31 H -0.040 1.040 32 H 0.263 0.737 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.127 0.873 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -16.865 -2.831 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.157 4.157 3 C -0.045 4.045 4 N -0.250 5.250 5 C 0.087 3.913 6 C -0.551 4.551 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.203 1.203 14 C -0.060 4.060 15 C -0.067 4.067 16 H 0.107 0.893 17 C -0.148 4.148 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.116 4.116 24 C -0.082 4.082 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.014 0.986 31 H -0.022 1.022 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.815 -16.946 -2.407 17.346 hybrid contribution -0.374 1.624 0.009 1.667 sum 2.441 -15.322 -2.398 15.699 Atomic orbital electron populations 1.23901 0.95800 1.01986 1.01435 1.23095 0.96005 0.97660 0.98944 1.21232 0.95944 0.96396 0.90922 1.61939 1.11287 1.19586 1.32227 1.19339 0.95990 0.83660 0.92307 1.21438 0.96398 0.98089 1.39159 0.92078 1.25866 1.00199 0.97136 0.96410 1.70093 1.30775 1.09055 1.47693 0.85415 0.79528 0.78273 0.77926 1.18771 1.20605 1.20305 1.22154 0.91002 0.94428 0.98393 1.20919 0.98660 0.93334 0.93763 0.89334 1.22367 0.94417 1.01431 0.96596 1.21052 0.94813 1.02764 0.92743 1.20975 0.96425 0.99118 0.95291 1.20833 0.98402 1.01194 0.93836 1.21253 0.92524 1.00512 1.00465 1.21272 0.99582 1.00127 0.95060 1.20821 0.97811 0.97895 0.95101 1.20485 0.93437 0.97443 0.96833 0.86543 0.89773 0.86103 0.92306 0.94270 0.98628 1.02185 0.92807 0.94464 0.93457 0.89064 0.89647 0.88832 0.90891 0.84593 0.84112 0.85469 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.67 14.32 67.78 0.97 -4.70 16 2 C -0.14 -4.40 7.83 25.65 0.20 -4.20 16 3 C 0.08 3.20 5.23 85.56 0.45 3.65 16 4 N -0.53 -22.70 3.84 -905.35 -3.47 -26.17 16 5 C 0.21 11.58 4.66 85.56 0.40 11.98 16 6 C -0.51 -29.45 8.13 25.60 0.21 -29.24 16 7 H 0.06 3.48 7.50 -2.91 -0.02 3.46 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 10 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.07 2.47 4.34 86.30 0.37 2.85 16 15 C -0.05 -1.40 2.59 -10.87 -0.03 -1.42 16 16 H 0.09 2.44 4.89 -2.39 -0.01 2.43 16 17 C -0.11 -2.38 6.60 31.51 0.21 -2.18 16 18 C -0.08 -1.73 6.76 30.52 0.21 -1.53 16 19 C -0.12 -3.37 6.14 -19.60 -0.12 -3.49 16 20 C -0.12 -3.31 10.04 22.30 0.22 -3.09 16 21 C -0.13 -3.49 10.05 22.24 0.22 -3.27 16 22 C -0.14 -4.36 10.05 22.24 0.22 -4.14 16 23 C -0.10 -3.36 9.79 22.30 0.22 -3.14 16 24 C -0.08 -2.63 5.23 -19.60 -0.10 -2.73 16 25 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 26 H 0.08 2.65 7.84 -2.91 -0.02 2.63 16 27 H 0.12 3.44 5.29 -2.91 -0.02 3.43 16 28 H 0.06 2.61 6.29 -2.39 -0.02 2.59 16 29 H 0.04 1.42 7.48 -2.39 -0.02 1.40 16 30 H 0.00 -0.26 7.82 -2.39 -0.02 -0.28 16 31 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.04 1.27 7.58 -2.39 -0.02 1.25 16 34 H 0.05 1.87 7.70 -2.39 -0.02 1.85 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.67 7.90 -2.39 -0.02 1.65 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 40 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 41 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 42 H 0.11 4.03 6.79 -2.91 -0.02 4.01 16 Total: -1.00 -66.03 335.36 3.93 -62.10 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.98 Total: 17.92 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 4.12 Total: -44.09 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.19 Total: -83.14 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.03 3.93 -62.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794735716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.781 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds