Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.03044 * 2 1 4 4 C 1.38104 * 119.93769 * 180.02562 * 3 2 1 5 5 C 1.38499 * 120.20927 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.85295 * 359.97438 * 5 4 3 7 7 C 1.38099 * 120.03426 * 180.02562 * 2 1 3 8 8 C 1.51371 * 109.75629 * 180.02562 * 6 5 4 9 9 C 1.54351 * 105.25729 * 342.76314 * 8 6 5 10 10 C 1.51367 * 130.38496 * 179.97438 * 5 4 3 11 11 H 1.08999 * 110.30520 * 316.10813 * 10 5 4 12 12 N 1.46899 * 110.30700 * 78.16293 * 10 5 4 13 13 C 1.46900 * 111.00166 * 273.54411 * 12 10 5 14 14 C 1.53000 * 109.47048 * 175.68536 * 13 12 10 15 15 C 1.50701 * 115.55070 * 65.18507 * 14 13 12 16 16 H 1.07995 * 119.99873 * 265.17898 * 15 14 13 17 17 C 1.37881 * 119.99778 * 85.17575 * 15 14 13 18 18 N 1.31517 * 119.99793 * 353.29115 * 17 15 14 19 19 Si 1.86799 * 119.99921 * 173.28708 * 17 15 14 20 20 H 1.48504 * 109.46888 * 90.00327 * 19 17 15 21 21 H 1.48497 * 109.46935 * 210.00212 * 19 17 15 22 22 H 1.48496 * 109.46985 * 330.00054 * 19 17 15 23 23 C 1.52999 * 117.49955 * 279.51477 * 14 13 12 24 24 C 1.52998 * 117.49750 * 210.85819 * 14 13 12 25 25 H 1.08998 * 109.47567 * 269.98061 * 1 2 3 26 26 H 1.08998 * 109.47517 * 29.98880 * 1 2 3 27 27 H 1.09006 * 109.46708 * 149.98192 * 1 2 3 28 28 H 1.08007 * 120.03300 * 0.03741 * 3 2 1 29 29 H 1.07993 * 119.89276 * 180.02562 * 4 3 2 30 30 H 1.07993 * 119.89345 * 359.97438 * 7 2 1 31 31 H 1.09003 * 110.29943 * 101.73338 * 8 6 5 32 32 H 1.08995 * 110.29942 * 223.78934 * 8 6 5 33 33 H 1.08993 * 110.82163 * 144.62265 * 9 8 6 34 34 H 1.09003 * 110.81474 * 268.17020 * 9 8 6 35 35 H 1.00902 * 110.99903 * 149.58816 * 12 10 5 36 36 H 1.09002 * 109.47213 * 295.68684 * 13 12 10 37 37 H 1.08999 * 109.46848 * 55.68373 * 13 12 10 38 38 H 0.97006 * 119.99543 * 185.05291 * 18 17 15 39 39 H 1.09003 * 117.49644 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.50148 * 145.02045 * 23 14 13 41 41 H 1.09000 * 117.50206 * 214.98267 * 24 14 13 42 42 H 1.09002 * 117.50062 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1969 0.0000 4 6 3.5799 1.1947 -0.0005 5 6 4.2748 -0.0033 -0.0016 6 6 3.5831 -1.2000 -0.0016 7 6 2.1982 -1.1956 -0.0005 8 6 4.5604 -2.3559 -0.0022 9 6 5.9086 -1.7477 -0.4439 10 6 5.7643 -0.2732 -0.0029 11 1 6.2672 0.3846 -0.7117 12 7 6.3173 -0.0866 1.3452 13 6 6.6770 1.3188 1.5768 14 6 7.1470 1.4933 3.0223 15 6 8.4200 0.7721 3.3834 16 1 8.3759 -0.2068 3.8376 17 6 9.6411 1.3619 3.1340 18 7 9.7008 2.4916 2.4632 19 14 11.2104 0.5566 3.7488 20 1 11.7278 -0.3737 2.7134 21 1 12.2272 1.6024 4.0272 22 1 10.9237 -0.1991 4.9946 23 6 6.0726 1.6149 4.1047 24 6 6.8860 2.8441 3.6918 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3634 0.8900 -0.5136 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6599 2.1329 0.0006 29 1 4.1196 2.1301 -0.0001 30 1 1.6570 -2.1301 -0.0005 31 1 4.6462 -2.7791 0.9986 32 1 4.2407 -3.1209 -0.7097 33 1 6.7386 -2.2291 0.0730 34 1 6.0301 -1.8190 -1.5248 35 1 7.1095 -0.6925 1.4981 36 1 7.4792 1.6054 0.8967 37 1 5.8068 1.9506 1.3988 38 1 10.5620 2.8687 2.2241 39 1 5.0309 1.5702 3.7871 40 1 6.2866 1.1737 5.0782 41 1 7.6349 3.2110 4.3937 42 1 6.3799 3.6085 3.1023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797587280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = 38.692811 kcal Electronic energy + Delta-G solvation = -20679.624631 eV Core-core repulsion = 17817.284760 eV Total energy + Delta-G solvation = -2862.339871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00474 -37.05631 -36.01842 -32.88308 -31.87801 -31.72277 -29.51747 -27.13619 -25.91445 -25.26621 -23.46845 -22.18335 -20.94143 -20.30040 -19.82067 -18.91880 -16.09393 -15.73928 -15.35191 -15.06822 -14.66299 -14.58778 -14.30514 -13.80115 -13.63536 -13.08172 -13.04817 -12.87942 -12.52645 -12.15140 -11.87333 -11.65808 -11.42474 -11.34557 -11.03614 -10.95439 -10.90107 -10.78063 -10.54109 -10.47859 -10.40065 -10.07861 -9.36598 -8.71848 -8.51499 -8.39290 -8.21242 -7.97959 -7.46184 -6.00890 -4.06927 1.59813 1.64736 3.27787 3.36110 3.40034 3.94989 4.40732 4.56980 4.83456 4.97600 5.03696 5.16341 5.22139 5.28272 5.35240 5.41984 5.58040 5.59281 5.69467 5.74592 5.80328 5.85969 5.97666 6.03256 6.10970 6.21811 6.25614 6.35298 6.46210 6.54358 6.62939 6.67648 6.77034 6.89373 6.90243 6.95740 7.01917 7.21288 7.26088 7.56699 7.60146 7.89594 8.02369 8.31769 8.53050 8.96476 9.58598 11.06946 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.004810 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.365978 B = 5819.815096 C = 6434.799580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.125 4.125 4 C -0.095 4.095 5 C -0.069 4.069 6 C -0.084 4.084 7 C -0.114 4.114 8 C -0.073 4.073 9 C -0.121 4.121 10 C 0.119 3.881 11 H 0.045 0.955 12 N -0.667 5.667 13 C 0.107 3.893 14 C 0.051 3.949 15 C -0.493 4.493 16 H 0.059 0.941 17 C 0.070 3.930 18 N -0.880 5.880 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.199 4.199 24 C -0.162 4.162 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.350 0.650 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.259 0.741 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 -5.960 -7.368 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.113 4.113 5 C -0.070 4.070 6 C -0.085 4.085 7 C -0.133 4.133 8 C -0.110 4.110 9 C -0.159 4.159 10 C 0.009 3.991 11 H 0.063 0.937 12 N -0.300 5.300 13 C -0.021 4.021 14 C 0.050 3.950 15 C -0.530 4.530 16 H 0.078 0.922 17 C -0.133 4.133 18 N -0.517 5.517 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.237 4.237 24 C -0.200 4.200 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.170 0.830 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.459 -5.728 -7.082 16.252 hybrid contribution 1.726 -0.045 -0.146 1.733 sum -11.733 -5.773 -7.228 14.941 Atomic orbital electron populations 1.20722 0.91545 1.02245 1.02034 1.19682 0.95584 0.93069 1.01164 1.20836 0.93840 0.97266 1.02391 1.20659 0.93722 0.97426 0.99539 1.20522 0.95682 0.92906 0.97850 1.20540 0.93209 0.95826 0.98900 1.20375 0.92741 0.97231 1.02907 1.20956 0.92787 0.95348 1.01935 1.22498 0.97629 0.95043 1.00684 1.20956 0.90931 0.95358 0.91839 0.93735 1.60393 1.38098 1.08664 1.22829 1.21478 0.96020 0.86676 0.97962 1.18724 0.92949 0.95325 0.87967 1.20463 0.88847 1.02779 1.40959 0.92244 1.25002 0.98782 0.94503 0.94972 1.69999 1.24769 1.18872 1.38057 0.86683 0.83382 0.78997 0.79498 1.20778 1.21305 1.19825 1.22852 0.95559 1.04447 1.00808 1.22519 1.01784 0.91265 1.04441 0.91469 0.91863 0.91937 0.86429 0.86585 0.86840 0.89878 0.91511 0.90061 0.91090 0.82972 0.94769 0.94419 0.93157 0.91753 0.91007 0.90382 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.09 -1.23 5.88 -104.67 -0.62 -1.85 16 3 C -0.13 -1.74 9.70 -39.62 -0.38 -2.13 16 4 C -0.09 -1.51 9.54 -39.53 -0.38 -1.89 16 5 C -0.07 -1.13 5.63 -104.21 -0.59 -1.72 16 6 C -0.08 -1.25 6.14 -104.21 -0.64 -1.89 16 7 C -0.11 -1.54 9.70 -39.54 -0.38 -1.93 16 8 C -0.07 -0.95 6.76 -26.85 -0.18 -1.13 16 9 C -0.12 -1.64 6.76 -25.19 -0.17 -1.81 16 10 C 0.12 2.00 3.19 -67.70 -0.22 1.78 16 11 H 0.04 0.78 7.90 -51.93 -0.41 0.37 16 12 N -0.67 -13.14 6.31 -106.72 -0.67 -13.81 16 13 C 0.11 2.41 5.35 -3.82 -0.02 2.39 16 14 C 0.05 1.26 1.56 -155.66 -0.24 1.02 16 15 C -0.49 -13.15 8.31 -34.44 -0.29 -13.43 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 18 N -0.88 -24.66 12.93 55.43 0.72 -23.94 16 19 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.20 -4.60 9.96 -26.70 -0.27 -4.86 16 24 C -0.16 -3.93 9.44 -26.70 -0.25 -4.18 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.12 1.83 7.45 -52.49 -0.39 1.43 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.07 7.59 -51.93 -0.39 0.68 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.35 7.06 7.65 -39.29 -0.30 6.76 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.82 6.85 -51.93 -0.36 0.47 16 38 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 39 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -28.44 342.56 -11.06 -39.50 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.89 Total: 7.79 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: -4.36 Total: -30.51 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.04 Total: -37.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.44 -11.06 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.193 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds